mRNA_L-elsbetiae_contig4935.12895.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig4935.12895.1 vs. uniprot
Match: D7FWC8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWC8_ECTSI) HSP 1 Score: 299 bits (766), Expect = 6.770e-93 Identity = 230/488 (47.13%), Postives = 261/488 (53.48%), Query Frame = 1 Query: 76 ELPRLRAMYATIESQVESLEAAMDPRFG-GELAGAYGRRVYGSLGPMLRQAQAASSELAQGVQALSARGGVPRGDALERSSELVARIERACLAHQARCPPQELERRMSREPSFSVVTSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGGAVGGLGSTPSAWQXXXXXXXXRQISDASAASRPLTRTLTLDDVVNETAELE-TDRHXXXXXXXXXXXREQGVPEHGXXXXXA----ATPDTG-PGTA----------GARSGEVGDQDTADDSRNEPFEGQDLEELAGVDDVSSGGTGDGLTAAAAARNGGVRAYSFGRGDLGALLHSDDADHAAADGPVALKDHWSVLQVSTSLFHTMAVTASGDILGCGQNDEGQVRPDLPSEAFLPRPSLVEPVLHHRVTQVACGLYHTACLTASGVCLTWGGNESGQLGHSADATRMVHPKAVQVAGAGQAWSSRRRAVRVACGDLFTLILTSKAE 1488 EL L +TIESQV SLE AMDPR ELAGAYGR+ Y SLG ML QA+ A+SE+A+ VQA GG ++E+V VGG RPLTRT TL+DV+NE E E R XXXXXXXXXXX +G + G A + G PG A G R E TA + LA +V + T G A GGV +SFGRGDLGALLHSDDADH+A +GPV +K+H SVLQVSTSLFHTMAVTASG+ILGCGQNDEGQVRPDL +EAFLPRPSLVEPVL HR+TQVACGLYHT C TASG+ ++WGGNESGQLGHS + TR V P VQV GAGQ+WSSRRRA RVACGDLFTLILTS+AE Sbjct: 49 ELSDLIRTVSTIESQVGSLEEAMDPRGSLTELAGAYGRQGYESLGSMLGQARTATSEVAERVQA---SGG--------SAAEMV---------------------------------------------------------------------------VGG---------------------------RPLTRTATLEDVINEADEREEVHRXXXXXXXXXXXXXXRGFGDGGDDSAMREARPANDERGIPGVADGGGFGGDHPGGRHSETLSTMTAATATEGQGSDGGTVALASPMEVEASATSAGAPQDQVAGEGGVGVFSFGRGDLGALLHSDDADHSAKEGPVVVKNHRSVLQVSTSLFHTMAVTASGEILGCGQNDEGQVRPDLLTEAFLPRPSLVEPVLSHRITQVACGLYHTVCATASGMAMSWGGNESGQLGHSGEITRTVRPMVVQVTGAGQSWSSRRRASRVACGDLFTLILTSRAE 423
BLAST of mRNA_L-elsbetiae_contig4935.12895.1 vs. uniprot
Match: A0A6H5K2Y9_9PHAE (HECT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2Y9_9PHAE) HSP 1 Score: 295 bits (754), Expect = 2.410e-84 Identity = 225/501 (44.91%), Postives = 265/501 (52.89%), Query Frame = 1 Query: 76 ELPRLRAMYATIESQVESLEAAMDPRFG-GELAGAYGRRVYGSLGPMLRQAQAASSELAQGVQALSARGGVPRG-DALERSSELVARIERACLAHQARCPPQELERRMSREPSFSVVTSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPGGAVGGLGSTPSAWQXXXXXXXXRQISDAS----AASRPLTRTLTLDDVVNETAELE-TDRHXXXXXXXXXXXREQGVPEHGXXXXXAATPDTGP-----GTAGARSGEVGDQDTADDSRNEPFEGQDLEELAGVDDVSSGGTGDGLTAAA------------------AARNGGVRAYSFGRGDLGALLHSDDADHAAADGPVALKDHWSVLQVSTSLFHTMAVTASGDILGCGQNDEGQVRPDLPSEAFLPRPSLVEPVLHHRVTQVACGLYHTACLTASGVCLTWGGNESGQLGHSADATRMVHPKAVQVAGAGQAWSSRRRAVRVACGDLFTLILTSKAE 1488 EL L M +TIESQV SLE AMDPR ELAGAYGR+VY SLG ML QA+AA+SE+A+ VQ LS + V + +RS L+ RI+RA LAH ARCPPQELERR+SREPSFSV + P G+ GLG T RQ S S RPLTRT+TL+DV+NE E E R XXX +G + G +A P+ P GT G GE D + +E L + G+ G A+A AA GGV +SFGRGDLGALLH+DDADH+A +GPV +K+H S+LQVSTSLFHTMAVTASG+ILGCGQNDEGQVRPDL +EAFLPRPSLVEPVL HR+TQ A ++ GQ+WSSRRRA RVACGDLFTLILTS+AE Sbjct: 49 ELSDLIRMVSTIESQVGSLEEAMDPRGSLTELAGAYGRQVYESLGSMLGQARAATSEVAERVQTLSGQEDVEVPLEVRQRSDNLLERIKRAWLAHTARCPPQELERRLSREPSFSVPQPTPSSGSDPSSTAAVGAGTSPAGVPAVPTPSASPP---PAGSPAGLGHT-----------RRRQASGGSQEMVVGGRPLTRTVTLEDVINEADEREEVHRRQXXXRDAAESGGSRGFGDDGDD---SAMPEARPANDERGTRGVADGEAFGGDHPEGGHSET-----LATITAATATEGQGSDGGTVASASPMEXXXXXXXXXXXXXXAAGEGGVGVFSFGRGDLGALLHADDADHSAEEGPVVVKNHRSLLQVSTSLFHTMAVTASGEILGCGQNDEGQVRPDLLTEAFLPRPSLVEPVLSHRITQ-----------------------------------------ARRLERWGQSWSSRRRASRVACGDLFTLILTSRAE 486
BLAST of mRNA_L-elsbetiae_contig4935.12895.1 vs. uniprot
Match: A0A482SUS3_9ARCH (HECT domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SUS3_9ARCH) HSP 1 Score: 134 bits (338), Expect = 8.530e-30 Identity = 77/172 (44.77%), Postives = 111/172 (64.53%), Query Frame = 1 Query: 985 RAYSFGRGDLGALLHSDDADHAAADGPVALKD-HWSVLQVSTSLFHTMAVTASGDILGCGQNDEGQVRPDLPSEAFLPRPSLVEPVLHHRVTQVACGLYHTACLTASGVCLTWGGNESGQLGHSADATRMVHPKAVQVAGAGQAWSSRRRAV---RVACGDLFTLILTSKAE 1488 R S+GR DLG L++ +D D DG + + +++ V+++++HT AVT++G++ CGQND+GQV D P E F RP +V+ + +H+V VACGL HT C+TA+G +++G NESGQLGHSA V PK V A +SRR A+ +VACGDLF+L L + E Sbjct: 69 RVLSWGRNDLGCLMYRNDED--IRDGIYSFSHTNRTIVSVASNVYHTAAVTSTGELYTCGQNDQGQVDADSPEEQF-ERPHVVDNIGNHKVISVACGLNHTVCVTAAGCAISYGSNESGQLGHSASKHTKVPPKVVNFTIA----ASRRAAMIITKVACGDLFSLFLLTSGE 233
BLAST of mRNA_L-elsbetiae_contig4935.12895.1 vs. uniprot
Match: A0A7S0SRU5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SRU5_9STRA) HSP 1 Score: 126 bits (317), Expect = 2.140e-28 Identity = 70/171 (40.94%), Postives = 106/171 (61.99%), Query Frame = 1 Query: 994 SFGRGDLGALLHSDDADHAAADGPVALK--DHWSVLQVSTSLFHTMAVTASGDILGCGQNDEGQVRPDLPS----EAFLPRPSLVEPVLHHRVTQVACGLYHTACLTASGVCLTWGGNESGQLGHSADATRMVHPKAVQVAGAGQAWSSRRRAVRVACGDLFTLILTSKAE 1488 S+GR D G L SD+ DG +LK + +++ +S++ +H+ AVTA+G++ CG NDEGQ P+ + + F+P+P ++E + HRV V+CGLYHTAC+ A+G +T+GGNE GQLGHS + V PK V G+ A +V+CGD+++L LT+ E Sbjct: 65 SWGRNDSGTLFRSDEE---TIDGVQSLKFFGNRNIISISSNCYHSAAVTATGELYLCGSNDEGQSNPNRDNNGQLQPFIPKPRIIESLGQHRVCFVSCGLYHTACVIATGHAITFGGNEVGQLGHSPNQISQVAPKLVDFKWKGKG----NIAHKVSCGDMYSLFLTTSGE 228
BLAST of mRNA_L-elsbetiae_contig4935.12895.1 vs. uniprot
Match: W7TN24_9STRA (Ubiquitin protein ligase e3a n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TN24_9STRA) HSP 1 Score: 117 bits (294), Expect = 3.460e-24 Identity = 67/134 (50.00%), Postives = 87/134 (64.93%), Query Frame = 1 Query: 1087 SVLQVSTSLFHTMAVTASGDILGCGQNDEGQVRPDLPSEAFLPRPSLVEPVLHHRVTQVACGLYHTACLTASGVCLTWGGNESGQLGHSADATRMVHPKAVQVAGAGQAWSSRRRAVRVACGDLFTLILTSKAE 1488 +V+ + ++L+HT+AVT +G++ G G N++GQV PD E L P LVEP+L RVT V+CG HTACLTASG +++G NE GQLGHSADA V G G R +VACG LFTL+LTS+ E Sbjct: 298 NVVNLCSTLYHTVAVTLTGEVYGAGVNEDGQVSPDR-QEPQLWTPVLVEPLLSQRVTMVSCGDNHTACLTASGAVVSFGNNEVGQLGHSADAASSQRVGPRTVVGLGS-----RMVKQVACGYLFTLLLTSQGE 425
BLAST of mRNA_L-elsbetiae_contig4935.12895.1 vs. uniprot
Match: A0A7S1U4V6_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U4V6_9STRA) HSP 1 Score: 112 bits (279), Expect = 2.060e-22 Identity = 71/174 (40.80%), Postives = 101/174 (58.05%), Query Frame = 1 Query: 991 YSFGRGDLGALLHSDDADHAA-ADGPVALKDHWSVLQVSTSLFHTMAVTASGDILGCGQNDEGQVRPD------LPSEAF--LPRPSLVEPVLHHRVTQVACGLYHTACLTASGVCLTWGGNESGQLGH----SADATRMVHPKAVQVAGAGQAWSSRRRAVRVACGDLFTLIL 1473 +S+GRGDLGALL D+ H A + P++ K ++ S++H VTA+G++ CG NDEGQV D + + F +P P ++E + R VACGLYHT L +SG ++WGGNE GQLGH + A R V P+A++ G S+ AV VA GD F+++L Sbjct: 135 FSWGRGDLGALLWPDEEYHGADVESPLSRK---RIMTAGGSMYHAAGVTATGEVYACGSNDEGQVGVDDVSGVEVDRDGFRIVPAPVMIEALYTQRAVAVACGLYHTLVLCSSGKVVSWGGNEVGQLGHGPPQAGAARRRVRPRAME----GMPPSAA--AVAVAAGDEFSVVL 299
BLAST of mRNA_L-elsbetiae_contig4935.12895.1 vs. uniprot
Match: A0A7S1U6E2_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U6E2_9STRA) HSP 1 Score: 112 bits (279), Expect = 2.510e-22 Identity = 71/174 (40.80%), Postives = 101/174 (58.05%), Query Frame = 1 Query: 991 YSFGRGDLGALLHSDDADHAA-ADGPVALKDHWSVLQVSTSLFHTMAVTASGDILGCGQNDEGQVRPD------LPSEAF--LPRPSLVEPVLHHRVTQVACGLYHTACLTASGVCLTWGGNESGQLGH----SADATRMVHPKAVQVAGAGQAWSSRRRAVRVACGDLFTLIL 1473 +S+GRGDLGALL D+ H A + P++ K ++ S++H VTA+G++ CG NDEGQV D + + F +P P ++E + R VACGLYHT L +SG ++WGGNE GQLGH + A R V P+A++ G S+ AV VA GD F+++L Sbjct: 135 FSWGRGDLGALLWPDEEYHGADVESPLSRK---RIMTAGGSMYHAAGVTATGEVYACGSNDEGQVGVDDVSGVEVDRDGFRIVPAPVMIEALYTQRAVAVACGLYHTLVLCSSGKVVSWGGNEVGQLGHGPPQAGAARRRVRPRAME----GMPPSAA--AVAVAAGDEFSVVL 299
BLAST of mRNA_L-elsbetiae_contig4935.12895.1 vs. uniprot
Match: A0A7S2XN65_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XN65_9STRA) HSP 1 Score: 102 bits (253), Expect = 4.480e-19 Identity = 63/135 (46.67%), Postives = 83/135 (61.48%), Query Frame = 1 Query: 1087 SVLQVSTSLFHTMAVTASGDILGCGQNDEGQVRPDLPSEAFLPRPSLVEPVLHHRV--TQVACGLYHTACLTASGVCLTWGGNESGQLGHS-ADATRMVHPKAVQVAGAGQAWSSRRRAVRVACGDLFTLILTSK 1482 +VL V+TS HT TA G++ CG N G+V P + + RP+L+E ++ +V QV+CGL+HTA LTA+G LTWG N +GQLGH+ +T V PK V G G RRA VACGD FTL LT++ Sbjct: 296 AVLSVATSATHTACATAQGEVYMCGMNPFGEVDPSGRKDMVV-RPTLLESLMGQQVQVVQVSCGLHHTAALTANGSILTWGSNNNGQLGHTQGSSTSHVFPKGF-VMGRG------RRAAAVACGDSFTLCLTTR 422
BLAST of mRNA_L-elsbetiae_contig4935.12895.1 vs. uniprot
Match: A0A7S4QLP3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QLP3_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 5.950e-15 Identity = 56/128 (43.75%), Postives = 79/128 (61.72%), Query Frame = 1 Query: 1126 AVTASGDILGCGQNDEGQVRPDLPS---EAFLPRPSLVEPVLHHRVTQVACGLYHTACLTASGVCLTWGGNESGQLGH---SAD---ATRMVHPKAVQVAGAGQAWSSRRRAVRVACGDLFTLILTSK 1482 AVTASG++L CG N +G+V P S +PRP+ +E + RV Q++CG HTA ++++G LTWG N+ GQLG S+D +T PKA+ V G G RRA V+CG+ FTL++T+K Sbjct: 1 AVTASGEVLTCGTNLDGEVDPTKASGDKHEIIPRPTHLECLSMTRVIQISCGSDHTAAVSSAGTVLTWGSNDKGQLGQFIRSSDTPSSTSFQRPKAM-VLGPG------RRASYVSCGEKFTLVITTK 121
BLAST of mRNA_L-elsbetiae_contig4935.12895.1 vs. uniprot
Match: A0A7S4QK45_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QK45_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 1.200e-14 Identity = 56/128 (43.75%), Postives = 79/128 (61.72%), Query Frame = 1 Query: 1126 AVTASGDILGCGQNDEGQVRPDLPS---EAFLPRPSLVEPVLHHRVTQVACGLYHTACLTASGVCLTWGGNESGQLGH---SAD---ATRMVHPKAVQVAGAGQAWSSRRRAVRVACGDLFTLILTSK 1482 AVTASG++L CG N +G+V P S +PRP+ +E + RV Q++CG HTA ++++G LTWG N+ GQLG S+D +T PKA+ V G G RRA V+CG+ FTL++T+K Sbjct: 1 AVTASGEVLTCGTNLDGEVDPTKASGDKHEIIPRPTHLECLSMTRVIQISCGSDHTAAVSSAGTVLTWGSNDKGQLGQFIRSSDTPSSTSFQRPKAM-VLGPG------RRASYVSCGEKFTLVITTK 121 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4935.12895.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig4935.12895.1 >prot_L-elsbetiae_contig4935.12895.1 ID=prot_L-elsbetiae_contig4935.12895.1|Name=mRNA_L-elsbetiae_contig4935.12895.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=496bp MTAGLQTAIGAGAAEAGEEAGEEAAELPRLRAMYATIESQVESLEAAMDPback to top mRNA from alignment at L-elsbetiae_contig4935:1654..10625- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig4935.12895.1 ID=mRNA_L-elsbetiae_contig4935.12895.1|Name=mRNA_L-elsbetiae_contig4935.12895.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=8972bp|location=Sequence derived from alignment at L-elsbetiae_contig4935:1654..10625- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig4935:1654..10625- >mRNA_L-elsbetiae_contig4935.12895.1 ID=mRNA_L-elsbetiae_contig4935.12895.1|Name=mRNA_L-elsbetiae_contig4935.12895.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2976bp|location=Sequence derived from alignment at L-elsbetiae_contig4935:1654..10625- (Laminarionema elsbetiae ELsaHSoW15)back to top |