mRNA_L-elsbetiae_contig4928.12886.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4928.12886.1
Unique NamemRNA_L-elsbetiae_contig4928.12886.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig4928.12886.1 vs. uniprot
Match: D7FT02_ECTSI (Serine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT02_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 1.090e-11
Identity = 35/52 (67.31%), Postives = 39/52 (75.00%), Query Frame = 2 
Query:  389 QSHGMEVRSGQKKGG*TEKKYKHMLNLALCVTTHTIPCILENY*TPIGITMP 544
            QS GMEVRSG KK G  EKK+ HMLN  LC TT T+ CILENY TP G+T+P
Sbjct:  365 QSRGMEVRSGHKKMGQVEKKFVHMLNSTLCATTRTMSCILENYQTPTGVTVP 416
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BLAST of mRNA_L-elsbetiae_contig4928.12886.1 vs. uniprot
Match: A0A836CAY7_9STRA (Serine--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAY7_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 2.780e-11
Identity = 34/52 (65.38%), Postives = 39/52 (75.00%), Query Frame = 2 
Query:  389 QSHGMEVRSGQKKGG*TEKKYKHMLNLALCVTTHTIPCILENY*TPIGITMP 544
            QS  ME+RSGQKK G TEKKY HMLN  LC TT T+ CILEN+ TP G+ +P
Sbjct:  369 QSRSMEIRSGQKKMGQTEKKYVHMLNATLCATTRTLSCILENFQTPDGVRVP 420
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BLAST of mRNA_L-elsbetiae_contig4928.12886.1 vs. uniprot
Match: D8LSC5_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC5_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 5.720e-8
Identity = 50/114 (43.86%), Postives = 61/114 (53.51%), Query Frame = 2 
Query:   41 KFLSQQWQRVVSSTGLVGYLNFHGQFGATPLLRSIGFCVQIGGVRRLVSPRMVRLLVDAGAGTTSATRAANAAGVVPSFGAPLAYTSSFAVQKK*TK*LDATE*QLHRLGAIRR 382
            +FL +Q +R  S   +  Y N     G TPL  SI +C          +PR+VRLLVDAGA TTS  R  N  G V     PLA T+S  +++K      ATE QLHRL AIRR
Sbjct:   37 QFLLRQ-RRKESEMSVHAYANSSDGSGMTPLSCSIEWCSS-------GNPRIVRLLVDAGADTTSTVRVTNLNGGVEYNDTPLAVTTSL-LREKVVDGKPATEEQLHRLQAIRR 141
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BLAST of mRNA_L-elsbetiae_contig4928.12886.1 vs. uniprot
Match: F0ZTM5_DICPU (Serine--tRNA ligase n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZTM5_DICPU)

HSP 1 Score: 60.8 bits (146), Expect = 6.750e-7
Identity = 30/52 (57.69%), Postives = 34/52 (65.38%), Query Frame = 2 
Query:  389 QSHGMEVRSGQKKGG*TEKKYKHMLNLALCVTTHTIPCILENY*TPIGITMP 544
            QS  +E+R G KK G  +KKY HMLN  L  TT  I CILENY T  GIT+P
Sbjct:  369 QSRDLEIRCGMKKQGQQQKKYVHMLNSTLAATTRVICCILENYQTEGGITVP 420
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BLAST of mRNA_L-elsbetiae_contig4928.12886.1 vs. uniprot
Match: SYSC_DICDI (Serine--tRNA ligase, cytoplasmic n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=SYSC_DICDI)

HSP 1 Score: 60.8 bits (146), Expect = 6.830e-7
Identity = 30/52 (57.69%), Postives = 34/52 (65.38%), Query Frame = 2 
Query:  389 QSHGMEVRSGQKKGG*TEKKYKHMLNLALCVTTHTIPCILENY*TPIGITMP 544
            QS  +E+R G KK G  +KKY HMLN  L  TT  I CILENY T  GIT+P
Sbjct:  365 QSRDLEIRCGMKKQGQQQKKYVHMLNSTLAATTRVICCILENYQTEGGITVP 416
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BLAST of mRNA_L-elsbetiae_contig4928.12886.1 vs. uniprot
Match: A0A316ZAF3_9BASI (Serine--tRNA ligase n=1 Tax=Tilletiopsis washingtonensis TaxID=58919 RepID=A0A316ZAF3_9BASI)

HSP 1 Score: 59.7 bits (143), Expect = 1.650e-6
Identity = 27/52 (51.92%), Postives = 35/52 (67.31%), Query Frame = 2 
Query:  389 QSHGMEVRSGQKKGG*TEKKYKHMLNLALCVTTHTIPCILENY*TPIGITMP 544
            QS  +EVR G KK G T+K Y HMLN  LC T   + C++EN+ TP G+T+P
Sbjct:  372 QSRSLEVRCGHKKQGETKKHYVHMLNGTLCATERALCCLVENWQTPEGLTIP 423
[Close]
BLAST of mRNA_L-elsbetiae_contig4928.12886.1 vs. uniprot
Match: D7FVU0_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVU0_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 2.660e-6
Identity = 44/109 (40.37%), Postives = 58/109 (53.21%), Query Frame = 2 
Query:   62 QRVVSSTGLVGYLNFHGQF--GATPLLRSIGFCVQIGGVRRLVSPRMVRLLVDAGAGTTSATRAANAAGVVPSFGAPLAYTSSFAVQKK*TK*LDATE*QLHRLGAIRR 382
            QR+    G V Y + + +   G T L+ SI  C+         +PR+VRLL++AGA TTS  R  N+ G V   G PLA T+S+  +K       ATE  L RL AIRR
Sbjct:  249 QRLKEEKGGVEYASINDRISSGLTALVFSIQRCLS-------QTPRIVRLLINAGADTTSVIRGTNSEGEVQCNGTPLALTTSYLWEKILDNGEPATEEHLQRLEAIRR 350
[Close]
BLAST of mRNA_L-elsbetiae_contig4928.12886.1 vs. uniprot
Match: UPI001B38E266 (serine-tRNA ligase n=1 Tax=Cucurbitaria berberidis CBS 394.84 TaxID=1168544 RepID=UPI001B38E266)

HSP 1 Score: 57.0 bits (136), Expect = 1.140e-5
Identity = 27/52 (51.92%), Postives = 33/52 (63.46%), Query Frame = 2 
Query:  389 QSHGMEVRSGQKKGG*TEKKYKHMLNLALCVTTHTIPCILENY*TPIGITMP 544
            Q+  +E+R G KK   T K+Y H LN  LC T  T+ CILENY TP G T+P
Sbjct:  295 QTRELEIRHGTKKLNATRKEYVHALNGTLCATERTLCCILENYQTPEGFTVP 346
[Close]
BLAST of mRNA_L-elsbetiae_contig4928.12886.1 vs. uniprot
Match: A0A178E568_9PLEO (Serine--tRNA ligase n=1 Tax=Pyrenochaeta sp. DS3sAY3a TaxID=765867 RepID=A0A178E568_9PLEO)

HSP 1 Score: 57.0 bits (136), Expect = 1.290e-5
Identity = 27/52 (51.92%), Postives = 33/52 (63.46%), Query Frame = 2 
Query:  389 QSHGMEVRSGQKKGG*TEKKYKHMLNLALCVTTHTIPCILENY*TPIGITMP 544
            Q+  +E+R G KK   T K+Y H LN  LC T  T+ CILENY TP G T+P
Sbjct:  374 QTRELEIRHGAKKLNATRKEYVHALNGTLCATERTLCCILENYQTPEGFTVP 425
[Close]
BLAST of mRNA_L-elsbetiae_contig4928.12886.1 vs. uniprot
Match: A0A316YGE0_9BASI (Serine--tRNA ligase n=1 Tax=Acaromyces ingoldii TaxID=215250 RepID=A0A316YGE0_9BASI)

HSP 1 Score: 56.6 bits (135), Expect = 1.720e-5
Identity = 25/52 (48.08%), Postives = 35/52 (67.31%), Query Frame = 2 
Query:  389 QSHGMEVRSGQKKGG*TEKKYKHMLNLALCVTTHTIPCILENY*TPIGITMP 544
            QS  +EV+ G KK G +++ Y HMLN  LC T   + C++ENY TP G+T+P
Sbjct:  372 QSRRLEVQCGVKKQGDSKRNYVHMLNGTLCATERALCCVVENYQTPDGLTIP 423
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4928.12886.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D7FT02_ECTSI1.090e-1167.31Serine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 ... [more]
A0A836CAY7_9STRA2.780e-1165.38Serine--tRNA ligase n=1 Tax=Tribonema minus TaxID=... [more]
D8LSC5_ECTSI5.720e-843.86EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
F0ZTM5_DICPU6.750e-757.69Serine--tRNA ligase n=1 Tax=Dictyostelium purpureu... [more]
SYSC_DICDI6.830e-757.69Serine--tRNA ligase, cytoplasmic n=1 Tax=Dictyoste... [more]
A0A316ZAF3_9BASI1.650e-651.92Serine--tRNA ligase n=1 Tax=Tilletiopsis washingto... [more]
D7FVU0_ECTSI2.660e-640.37EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
UPI001B38E2661.140e-551.92serine-tRNA ligase n=1 Tax=Cucurbitaria berberidis... [more]
A0A178E568_9PLEO1.290e-551.92Serine--tRNA ligase n=1 Tax=Pyrenochaeta sp. DS3sA... [more]
A0A316YGE0_9BASI1.720e-548.08Serine--tRNA ligase n=1 Tax=Acaromyces ingoldii Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4928contigL-elsbetiae_contig4928:4879..5714 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size836
Cds size561
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816490.832072-CDS-L-elsbetiae_contig4928:4878..54391622816490.832072-CDS-L-elsbetiae_contig4928:4878..5439Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4928 4879..5439 +
1691683597.548909-CDS-L-elsbetiae_contig4928:4878..54391691683597.548909-CDS-L-elsbetiae_contig4928:4878..5439Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4928 4879..5439 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816490.8508656-UTR-L-elsbetiae_contig4928:5439..57141622816490.8508656-UTR-L-elsbetiae_contig4928:5439..5714Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4928 5440..5714 +
1691683597.5605266-UTR-L-elsbetiae_contig4928:5439..57141691683597.5605266-UTR-L-elsbetiae_contig4928:5439..5714Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig4928 5440..5714 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4928.12886.1prot_L-elsbetiae_contig4928.12886.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4928 4879..5439 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4928.12886.1

>prot_L-elsbetiae_contig4928.12886.1 ID=prot_L-elsbetiae_contig4928.12886.1|Name=mRNA_L-elsbetiae_contig4928.12886.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=187bp
TGLRSGVVQRVGREVPIATVAAGGVLDRLSWVPQLPRSIRRHALVAKHWF
LRSDRGRAPVGFTQDGAVACRRRSRYNVSYASCERSRRCSQLRCAAGLHQ
FIRRSEEINEVIRRDRVAAAQTGGDPPLDTEPRDGGAVRAEERGVDGEEV
QAHAELGAVRDDPHHTVHPRELLDPDRNHDARGERS*
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mRNA from alignment at L-elsbetiae_contig4928:4879..5714+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4928.12886.1 ID=mRNA_L-elsbetiae_contig4928.12886.1|Name=mRNA_L-elsbetiae_contig4928.12886.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=836bp|location=Sequence derived from alignment at L-elsbetiae_contig4928:4879..5714+ (Laminarionema elsbetiae ELsaHSoW15)
ACCGGCCTCCGCAGCGGAGTGGTTCAGCGGGTCGGCAGGGAAGTTCCTAT
CGCAACAGTGGCAGCGGGTGGTGTCCTCGACCGGCTTAGTTGGGTACCTC
AACTTCCACGGTCAATTCGGCGCCACGCCCTTGTTGCGAAGCATTGGTTT
TTGCGTTCAGATCGGGGGCGTGCGCCGGTTGGTTTCACCCAGGATGGTGC
GGTTGCTTGTCGACGCCGGAGCAGGTACAACGTCAGCTACGCGAGCTGCG
AACGCAGCAGGCGTTGTTCCCAGCTTCGGTGCGCCGCTGGCTTACACCAG
TTCATTCGCCGTTCAGAAGAAATAAACGAAGTGATTAGACGCGACAGAGT
AGCAGCTGCACAGACTGGGGGCGATCCGCCGCTAGACACAGAGCCACGGG
ATGGAGGTGCGGTCCGGGCAGAAGAAAGGGGGGTAGACGGAGAAGAAGTA
CAAGCACATGCTGAACTTGGCGCTGTGCGTGACGACCCACACCATACCGT
GCATCCTCGAGAACTACTAGACCCCGATAGGAATCACGATGCCCGGGGGG
AGCGGAGCTGAGCTGGGCTTAATGTGTGTGTTCCAATCTTGTACAGTCAT
CGAGCCTCCATCGGTCTGCACCACGCACCACGTTGTTTGACAGTCCGGCT
GATGTGTTGTTAGTAGTGTTGTCATTGTGCTGCTTATGGTTGGCGAAATC
CCCGTGACTATGTTCAGTCCCGCCGTGGCCCTGTTGACAGCCTCGTCGTG
CACCGAGTGTTTTTGCTGTTGGTGCTGGCCCGCCCCCCACTCTCCACCCC
AGCCGCCCCGTATCGCTTATCGCGGAAAATTTCATC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig4928:4879..5714+

>mRNA_L-elsbetiae_contig4928.12886.1 ID=mRNA_L-elsbetiae_contig4928.12886.1|Name=mRNA_L-elsbetiae_contig4928.12886.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1122bp|location=Sequence derived from alignment at L-elsbetiae_contig4928:4879..5714+ (Laminarionema elsbetiae ELsaHSoW15)
ACCGGCCTCCGCAGCGGAGTGGTTCAGCGGGTCGGCAGGGAAGTTCCTAT
CGCAACAGTGGCAGCGGGTGGTGTCCTCGACCGGCTTAGTTGGGTACCTC
AACTTCCACGGTCAATTCGGCGCCACGCCCTTGTTGCGAAGCATTGGTTT
TTGCGTTCAGATCGGGGGCGTGCGCCGGTTGGTTTCACCCAGGATGGTGC
GGTTGCTTGTCGACGCCGGAGCAGGTACAACGTCAGCTACGCGAGCTGCG
AACGCAGCAGGCGTTGTTCCCAGCTTCGGTGCGCCGCTGGCTTACACCAG
TTCATTCGCCGTTCAGAAGAAATAAACGAAGTGATTAGACGCGACAGAGT
AGCAGCTGCACAGACTGGGGGCGATCCGCCGCTAGACACAGAGCCACGGG
ATGGAGGTGCGGTCCGGGCAGAAGAAAGGGGGGTAGACGGAGAAGAAGTA
CAAGCACATGCTGAACTTGGCGCTGTGCGTGACGACCCACACCATACCGT
GCATCCTCGAGAACTACTAGACCCCGATAGGAATCACGATGCCCGGGGGG
AGCGGAGCTGAACCGGCCTCCGCAGCGGAGTGGTTCAGCGGGTCGGCAGG
GAAGTTCCTATCGCAACAGTGGCAGCGGGTGGTGTCCTCGACCGGCTTAG
TTGGGTACCTCAACTTCCACGGTCAATTCGGCGCCACGCCCTTGTTGCGA
AGCATTGGTTTTTGCGTTCAGATCGGGGGCGTGCGCCGGTTGGTTTCACC
CAGGATGGTGCGGTTGCTTGTCGACGCCGGAGCAGGTACAACGTCAGCTA
CGCGAGCTGCGAACGCAGCAGGCGTTGTTCCCAGCTTCGGTGCGCCGCTG
GCTTACACCAGTTCATTCGCCGTTCAGAAGAAATAAACGAAGTGATTAGA
CGCGACAGAGTAGCAGCTGCACAGACTGGGGGCGATCCGCCGCTAGACAC
AGAGCCACGGGATGGAGGTGCGGTCCGGGCAGAAGAAAGGGGGGTAGACG
GAGAAGAAGTACAAGCACATGCTGAACTTGGCGCTGTGCGTGACGACCCA
CACCATACCGTGCATCCTCGAGAACTACTAGACCCCGATAGGAATCACGA
TGCCCGGGGGGAGCGGAGCTGA
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