prot_L-elsbetiae_contig4928.12887.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig4928.12887.1
Unique Nameprot_L-elsbetiae_contig4928.12887.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length123
Homology
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BLAST of mRNA_L-elsbetiae_contig4928.12887.1 vs. uniprot
Match: D7FT02_ECTSI (Serine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT02_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 2.030e-18
Identity = 48/58 (82.76%), Postives = 52/58 (89.66%), Query Frame = 0 
Query:   40 AITAKIAAKGNEIRELKKSKADKATLQPHIDALIALKTQCRDETGKAGVAPGTPASAS 97
            AITAKI AKG+EIRELKKSK DKAT+QPHIDALIALKTQ +DETGKA VAPG  A+AS
Sbjct:  581 AITAKIVAKGDEIRELKKSKPDKATIQPHIDALIALKTQYKDETGKAYVAPGATANAS 638
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BLAST of mRNA_L-elsbetiae_contig4928.12887.1 vs. uniprot
Match: A0A836CAY7_9STRA (Serine--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAY7_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.250e-7
Identity = 32/53 (60.38%), Postives = 40/53 (75.47%), Query Frame = 0 
Query:   39 AAITAKIAAKGNEIRELKKSKADKATLQPHIDALIALKTQCRDETGKAGVAPG 91
            A I AKIA+ G+ IR+LKK+KADKA LQP+IDAL+ LK Q ++ TG    APG
Sbjct:  589 AEIAAKIASTGDAIRDLKKAKADKAQLQPYIDALLDLKRQYKEATGADYAAPG 641
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4928.12887.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FT02_ECTSI2.030e-1882.76Serine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 ... [more]
A0A836CAY7_9STRA1.250e-760.38Serine--tRNA ligase n=1 Tax=Tribonema minus TaxID=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000738WHEP-TRS domainSMARTSM00991WHEP_TRS_a_2_a_3_acoord: 41..94
e-value: 2.0E-6
score: 37.3
IPR000738WHEP-TRS domainPFAMPF00458WHEP-TRScoord: 41..86
e-value: 1.4E-11
score: 44.3
IPR000738WHEP-TRS domainPROSITEPS51185WHEP_TRS_2coord: 37..93
score: 10.081
NoneNo IPR availableGENE3D1.10.287.10coord: 28..100
e-value: 1.7E-14
score: 55.3
IPR009068S15/NS1, RNA-bindingSUPERFAMILY47060S15/NS1 RNA-binding domaincoord: 39..90

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4928contigL-elsbetiae_contig4928:11771..13530 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4928.12887.1mRNA_L-elsbetiae_contig4928.12887.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig4928 11771..13530 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig4928.12887.1 ID=prot_L-elsbetiae_contig4928.12887.1|Name=mRNA_L-elsbetiae_contig4928.12887.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=123bp
YVPVAAPASVPPAKKAAVRGAAASASAGRGGEKESPAAAAITAKIAAKGN
EIRELKKSKADKATLQPHIDALIALKTQCRDETGKAGVAPGTPASASSGG
GGGAKKRPKEVAVLAGRNAGNKK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000738WHEP-TRS_dom
IPR009068S15_NS1_RNA-bd