prot_L-elsbetiae_contig4898.12823.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig4898.12823.1
Unique Nameprot_L-elsbetiae_contig4898.12823.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length89
Homology
BLAST of mRNA_L-elsbetiae_contig4898.12823.1 vs. uniprot
Match: D7FP28_ECTSI (DNA-directed RNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP28_ECTSI)

HSP 1 Score: 172 bits (436), Expect = 2.730e-54
Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 0
Query:    1 VTPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKANINIGRIPVMLLSCKCVLTGKSEAELADMKECPYDPGGYFVVKGVEKV 81
            VTPFQCRLRDCTYSAPLWVNVRYTRGRQIVNK NINIGRIPVMLLSCKCVLTGKSEAELADMKECPYDPGGYFVVKGVEKV
Sbjct:    5 VTPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKTNINIGRIPVMLLSCKCVLTGKSEAELADMKECPYDPGGYFVVKGVEKV 85          
BLAST of mRNA_L-elsbetiae_contig4898.12823.1 vs. uniprot
Match: A0A6H5JAF8_9PHAE (DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAF8_9PHAE)

HSP 1 Score: 172 bits (435), Expect = 3.590e-48
Identity = 79/81 (97.53%), Postives = 80/81 (98.77%), Query Frame = 0
Query:    1 VTPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKANINIGRIPVMLLSCKCVLTGKSEAELADMKECPYDPGGYFVVKGVEKV 81
            +TPFQCRLRDCTYSAPLWVNVRYTRGRQIVNK NINIGRIPVMLLSCKCVLTGKSEAELADMKECPYDPGGYFVVKGVEKV
Sbjct:  153 ITPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKTNINIGRIPVMLLSCKCVLTGKSEAELADMKECPYDPGGYFVVKGVEKV 233          
BLAST of mRNA_L-elsbetiae_contig4898.12823.1 vs. uniprot
Match: A0A7S3DT07_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DT07_9STRA)

HSP 1 Score: 140 bits (353), Expect = 7.290e-39
Identity = 63/81 (77.78%), Postives = 73/81 (90.12%), Query Frame = 0
Query:    1 VTPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKANINIGRIPVMLLSCKCVLTGKSEAELADMKECPYDPGGYFVVKGVEKV 81
            +TPFQCRLRDC+YSAP++VNVRYTRGRQIV K N+ IGR+P+ML S  CVLTGK+E ELA +KECPYDPGGYFV+KGVEKV
Sbjct:   52 ITPFQCRLRDCSYSAPIYVNVRYTRGRQIVVKRNVMIGRMPIMLRSQNCVLTGKTEDELAALKECPYDPGGYFVIKGVEKV 132          
BLAST of mRNA_L-elsbetiae_contig4898.12823.1 vs. uniprot
Match: I2CNY0_NANGC (DNA-directed RNA polymerase subunit beta n=3 Tax=Monodopsidaceae TaxID=425072 RepID=I2CNY0_NANGC)

HSP 1 Score: 143 bits (361), Expect = 7.120e-38
Identity = 64/81 (79.01%), Postives = 73/81 (90.12%), Query Frame = 0
Query:    1 VTPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKANINIGRIPVMLLSCKCVLTGKSEAELADMKECPYDPGGYFVVKGVEKV 81
            VTPFQCRLRDCTYSAP+ V+VRYTRGRQIV K  + IGRIP+ML SCKC+L G+SEAELA+ KECPYDPGGYF+VKGVE+V
Sbjct:  121 VTPFQCRLRDCTYSAPITVDVRYTRGRQIVVKRGVMIGRIPIMLRSCKCILAGRSEAELAEKKECPYDPGGYFIVKGVERV 201          
BLAST of mRNA_L-elsbetiae_contig4898.12823.1 vs. uniprot
Match: A0A7S2XTK8_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XTK8_9STRA)

HSP 1 Score: 135 bits (339), Expect = 2.370e-37
Identity = 60/80 (75.00%), Postives = 71/80 (88.75%), Query Frame = 0
Query:    2 TPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKANINIGRIPVMLLSCKCVLTGKSEAELADMKECPYDPGGYFVVKGVEKV 81
            TPFQCRLRDCTYSAP++VNVRYTRGRQIV K  + +GR+P+ML S KC+L+ K+E +LA MKECPYDPGGYFV+KGVEKV
Sbjct:  140 TPFQCRLRDCTYSAPIYVNVRYTRGRQIVIKKKVLVGRMPIMLRSSKCLLSHKTERQLAAMKECPYDPGGYFVIKGVEKV 219          
BLAST of mRNA_L-elsbetiae_contig4898.12823.1 vs. uniprot
Match: A0A482SHA3_9ARCH (DNA-directed RNA polymerase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SHA3_9ARCH)

HSP 1 Score: 130 bits (328), Expect = 2.380e-37
Identity = 62/81 (76.54%), Postives = 67/81 (82.72%), Query Frame = 0
Query:    1 VTPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKANINIGRIPVMLLSCKCVLTGKSEAELADMKECPYDPGGYFVVKGVEKV 81
            VTPFQCRLRDCTYSAPL+VNV+YTR +QIV K NI IGRIP+ML S KCVL  KS  EL  +KEC YDPGGYFVVKG EKV
Sbjct:   23 VTPFQCRLRDCTYSAPLYVNVKYTRQKQIVVKNNIQIGRIPIMLRSEKCVLNNKSSEELGALKECEYDPGGYFVVKGTEKV 103          
BLAST of mRNA_L-elsbetiae_contig4898.12823.1 vs. uniprot
Match: A0A7S2EFY4_TRICV (DNA-directed RNA polymerase (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EFY4_TRICV)

HSP 1 Score: 131 bits (329), Expect = 5.290e-37
Identity = 56/80 (70.00%), Postives = 72/80 (90.00%), Query Frame = 0
Query:    2 TPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKANINIGRIPVMLLSCKCVLTGKSEAELADMKECPYDPGGYFVVKGVEKV 81
            +PFQCRLRDCTYSAP++V+VRYTRGRQIV K  + +GR+P+ML S KC+L+GK+E +LA M+ECP+DPGGYF++KGVEKV
Sbjct:   51 SPFQCRLRDCTYSAPIYVDVRYTRGRQIVVKKKVVVGRMPIMLRSSKCMLSGKTERQLARMRECPHDPGGYFIIKGVEKV 130          
BLAST of mRNA_L-elsbetiae_contig4898.12823.1 vs. uniprot
Match: A0A1E7EUM7_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EUM7_9STRA)

HSP 1 Score: 139 bits (350), Expect = 2.170e-36
Identity = 63/80 (78.75%), Postives = 71/80 (88.75%), Query Frame = 0
Query:    2 TPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKANINIGRIPVMLLSCKCVLTGKSEAELADMKECPYDPGGYFVVKGVEKV 81
            TPFQCRLRDCTYSAP++VNVRYTRGRQIV K  + IG++P+ML S KC+L GKSE +LA MKECPYDPGGYFVVKGVEKV
Sbjct:  162 TPFQCRLRDCTYSAPIYVNVRYTRGRQIVVKRKVKIGQMPIMLRSQKCILNGKSEQDLARMKECPYDPGGYFVVKGVEKV 241          
BLAST of mRNA_L-elsbetiae_contig4898.12823.1 vs. uniprot
Match: B8BQM2_THAPS (DNA-directed RNA polymerase subunit beta n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BQM2_THAPS)

HSP 1 Score: 138 bits (348), Expect = 4.030e-36
Identity = 63/80 (78.75%), Postives = 70/80 (87.50%), Query Frame = 0
Query:    2 TPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKANINIGRIPVMLLSCKCVLTGKSEAELADMKECPYDPGGYFVVKGVEKV 81
            TPFQCRLRDCTYSAP++VNVRYTRGRQIV K  + IGR+P+ML S KC+L  KSE ELA MKECPYDPGGYFV+KGVEKV
Sbjct:   61 TPFQCRLRDCTYSAPIYVNVRYTRGRQIVVKKKVMIGRMPIMLRSSKCLLRDKSERELAQMKECPYDPGGYFVIKGVEKV 140          
BLAST of mRNA_L-elsbetiae_contig4898.12823.1 vs. uniprot
Match: A0A7S4QYU8_9STRA (DNA-directed RNA polymerase subunit beta n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QYU8_9STRA)

HSP 1 Score: 135 bits (341), Expect = 3.560e-35
Identity = 62/80 (77.50%), Postives = 71/80 (88.75%), Query Frame = 0
Query:    2 TPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKANINIGRIPVMLLSCKCVLTGKSEAELADMKECPYDPGGYFVVKGVEKV 81
            TPFQCRLRDCTYSAP++V+VRYTRGRQIV K  I IGR+P+ML S KC+LTGK+  +LA MKECP+DPGGYFVVKGVEKV
Sbjct:  295 TPFQCRLRDCTYSAPIYVDVRYTRGRQIVVKRKIMIGRLPIMLRSSKCLLTGKTHRQLARMKECPHDPGGYFVVKGVEKV 374          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4898.12823.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FP28_ECTSI2.730e-5498.77DNA-directed RNA polymerase n=1 Tax=Ectocarpus sil... [more]
A0A6H5JAF8_9PHAE3.590e-4897.53DNA-directed RNA polymerase n=1 Tax=Ectocarpus sp.... [more]
A0A7S3DT07_9STRA7.290e-3977.78DNA-directed RNA polymerase (Fragment) n=1 Tax=Amp... [more]
I2CNY0_NANGC7.120e-3879.01DNA-directed RNA polymerase subunit beta n=3 Tax=M... [more]
A0A7S2XTK8_9STRA2.370e-3775.00DNA-directed RNA polymerase (Fragment) n=1 Tax=Att... [more]
A0A482SHA3_9ARCH2.380e-3776.54DNA-directed RNA polymerase n=1 Tax=archaeon TaxID... [more]
A0A7S2EFY4_TRICV5.290e-3770.00DNA-directed RNA polymerase (Fragment) n=1 Tax=Tri... [more]
A0A1E7EUM7_9STRA2.170e-3678.75DNA-directed RNA polymerase subunit beta n=1 Tax=F... [more]
B8BQM2_THAPS4.030e-3678.75DNA-directed RNA polymerase subunit beta n=1 Tax=T... [more]
A0A7S4QYU8_9STRA3.560e-3577.50DNA-directed RNA polymerase subunit beta n=2 Tax=D... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007644RNA polymerase, beta subunit, protrusionPFAMPF04563RNA_pol_Rpb2_1coord: 1..83
e-value: 8.6E-29
score: 100.5
NoneNo IPR availableGENE3D3.90.1100.10coord: 1..84
e-value: 8.3E-8
score: 33.7
NoneNo IPR availablePANTHERPTHR20856:SF8DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC2coord: 1..82
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 2..85
IPR015712DNA-directed RNA polymerase, subunit 2PANTHERPTHR20856DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2coord: 1..82

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4898contigL-elsbetiae_contig4898:10142..11352 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4898.12823.1mRNA_L-elsbetiae_contig4898.12823.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig4898 10142..11352 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig4898.12823.1 ID=prot_L-elsbetiae_contig4898.12823.1|Name=mRNA_L-elsbetiae_contig4898.12823.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=89bp
VTPFQCRLRDCTYSAPLWVNVRYTRGRQIVNKANINIGRIPVMLLSCKCV
LTGKSEAELADMKECPYDPGGYFVVKGVEKVCVFVCVL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007644RNA_pol_bsu_protrusion
IPR015712DNA-dir_RNA_pol_su2