prot_L-elsbetiae_contig4887.12805.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig4887.12805.1
Unique Nameprot_L-elsbetiae_contig4887.12805.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length228
Homology
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BLAST of mRNA_L-elsbetiae_contig4887.12805.1 vs. uniprot
Match: A0A6H5KNI2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNI2_9PHAE)

HSP 1 Score: 186 bits (472), Expect = 1.830e-50
Identity = 101/163 (61.96%), Postives = 127/163 (77.91%), Query Frame = 0 
Query:   12 LPASKLPLSQSQAQTLGLVAAGKEGKARAKTLVTAVKDRCLKTLAGLQACKLPSACADPILFNTPVNTTVATDYEHIITNKMDVDTVSRTLKLNRYPTVEAFFRDLLLVYDNAIRYFERGGAFKSNHVYEAAKALQTVALREKRQVVNGFEKQVSALLVEASR 174
            L AS+ PLSQ+QAQ LGLVAA KEGKA+AK LV A+KDRCLK +  +Q  KLP++CA   LF+ PVNT+VATDYE I++ KMDV+TV + LK NRYPTVE  FRDL LVYDNAIRY+++GGA K+  +YEAAKAL+TVA  EKR ++  F ++V  +  EAS+
Sbjct: 1229 LTASEFPLSQAQAQALGLVAASKEGKAKAKELVGAIKDRCLKKVKEIQEYKLPTSCASSHLFDLPVNTSVATDYEGIVSTKMDVNTVVKKLKNNRYPTVECLFRDLTLVYDNAIRYYQQGGAHKNILIYEAAKALKTVAEYEKRIILRVFCEKVFMMQTEASQ 1391
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BLAST of mRNA_L-elsbetiae_contig4887.12805.1 vs. uniprot
Match: D7FWI3_ECTSI (Global transcription factor group n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWI3_ECTSI)

HSP 1 Score: 168 bits (425), Expect = 3.630e-44
Identity = 88/133 (66.17%), Postives = 108/133 (81.20%), Query Frame = 0 
Query:   12 LPASKLPLSQSQAQTLGLVAAGKEGKARAKTLVTAVKDRCLKTLAGLQACKLPSACADPILFNTPVNTTVATDYEHIITNKMDVDTVSRTLKLNRYPTVEAFFRDLLLVYDNAIRYFERGGAFKSNHVYEAAK 144
            L AS+ PLSQ+QAQ LGLVAA KEGKA+AK LV A+KDRCLK +  +Q  KLP++CA   LF+ PVNT+VATDYE I++ KMDV+TV + LK NRYPTVE+ FRDL LVYDNAIRY+++GGA K+  +YEAAK
Sbjct:  762 LTASEFPLSQAQAQALGLVAASKEGKAKAKELVGAIKDRCLKKVKEIQVYKLPTSCASSHLFDLPVNTSVATDYEGIVSTKMDVNTVVKRLKNNRYPTVESLFRDLTLVYDNAIRYYQQGGAHKNILIYEAAK 894
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4887.12805.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KNI2_9PHAE1.830e-5061.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWI3_ECTSI3.630e-4466.17Global transcription factor group n=1 Tax=Ectocarp... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 205..228
NoneNo IPR availablePANTHERPTHR15398BROMODOMAIN-CONTAINING PROTEIN 8coord: 72..153
IPR001487BromodomainSMARTSM00297bromo_6coord: 44..159
e-value: 6.8E-7
score: 38.9
IPR001487BromodomainPFAMPF00439Bromodomaincoord: 72..131
e-value: 2.5E-13
score: 49.9
IPR001487BromodomainPROSITEPS50014BROMODOMAIN_2coord: 73..135
score: 12.099
IPR036427Bromodomain-like superfamilyGENE3D1.20.920.10coord: 30..165
e-value: 1.4E-18
score: 68.7
IPR036427Bromodomain-like superfamilySUPERFAMILY47370Bromodomaincoord: 42..159

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4887contigL-elsbetiae_contig4887:5638..9658 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4887.12805.1mRNA_L-elsbetiae_contig4887.12805.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig4887 5610..9658 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig4887.12805.1 ID=prot_L-elsbetiae_contig4887.12805.1|Name=mRNA_L-elsbetiae_contig4887.12805.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=228bp
MIETPPPTKPPLPASKLPLSQSQAQTLGLVAAGKEGKARAKTLVTAVKDR
CLKTLAGLQACKLPSACADPILFNTPVNTTVATDYEHIITNKMDVDTVSR
TLKLNRYPTVEAFFRDLLLVYDNAIRYFERGGAFKSNHVYEAAKALQTVA
LREKRQVVNGFEKQVSALLVEASRPPPFVIPLKKEAKEERDRKAAAVAAA
AAAAAAAAVAAAEAVEAERERKREEVAR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001487Bromodomain
IPR036427Bromodomain-like_sf