prot_L-elsbetiae_contig4868.12781.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig4868.12781.1
Unique Nameprot_L-elsbetiae_contig4868.12781.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length222
Homology
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BLAST of mRNA_L-elsbetiae_contig4868.12781.1 vs. uniprot
Match: A0A6H5K1T1_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1T1_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 1.290e-6
Identity = 41/92 (44.57%), Postives = 54/92 (58.70%), Query Frame = 0 
Query:   60 VFRNSGSAPTRNRPPLISSDALRAFFTDIYAVV-STDAALPSPVSSRPTLDPSAVISTRTRGRAAAAAGTPRPAVNYGFDTSDSVALPSLSP 150
            +F  S  +  RNRPP++ S +L   F D+ A+      A+P+  + R  LDP+ VISTRTR R AA AGTP P V+Y F   +    PSLSP
Sbjct:  296 MFCRSVRSRLRNRPPMVWSGSLPQSFDDVLALEPEPPTAVPALGNPRRILDPTQVISTRTRRRKAAVAGTPLPPVDYVFSDDE----PSLSP 383
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4868.12781.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K1T1_9PHAE1.290e-644.57Reverse transcriptase domain-containing protein n=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..222
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..13

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4868contigL-elsbetiae_contig4868:3540..4205 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4868.12781.1mRNA_L-elsbetiae_contig4868.12781.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig4868 3540..4206 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig4868.12781.1 ID=prot_L-elsbetiae_contig4868.12781.1|Name=mRNA_L-elsbetiae_contig4868.12781.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=222bp
GVLAWVGSFLLHLPLLCGDPLCLLLTLLIFAKVILQFSADIQSFTPSQSA
YPVHATTPIVFRNSGSAPTRNRPPLISSDALRAFFTDIYAVVSTDAALPS
PVSSRPTLDPSAVISTRTRGRAAAAAGTPRPAVNYGFDTSDSVALPSLSP
VPKHQSTSPPALPDVTRPSVALPTLPTTALPVPEDSVPRQTSVSPSTCCP
PYPSPATPLAPLMGPGPPLSVE
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