mRNA_L-elsbetiae_contig4868.12781.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig4868.12781.1
Unique NamemRNA_L-elsbetiae_contig4868.12781.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig4868.12781.1 vs. uniprot
Match: A0A6H5K1T1_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1T1_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 1.290e-6
Identity = 41/92 (44.57%), Postives = 54/92 (58.70%), Query Frame = 1 
Query:  178 VFRNSGSAPTRNRPPLISSDALRAFFTDIYAVV-STDAALPSPVSSRPTLDPSAVISTRTRGRAAAAAGTPRPAVNYGFDTSDSVALPSLSP 450
            +F  S  +  RNRPP++ S +L   F D+ A+      A+P+  + R  LDP+ VISTRTR R AA AGTP P V+Y F   +    PSLSP
Sbjct:  296 MFCRSVRSRLRNRPPMVWSGSLPQSFDDVLALEPEPPTAVPALGNPRRILDPTQVISTRTRRRKAAVAGTPLPPVDYVFSDDE----PSLSP 383
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig4868.12781.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K1T1_9PHAE1.290e-644.57Reverse transcriptase domain-containing protein n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig4868contigL-elsbetiae_contig4868:3540..4206 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size667
Cds size666
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816479.5564878-CDS-L-elsbetiae_contig4868:3539..42051622816479.5564878-CDS-L-elsbetiae_contig4868:3539..4205Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4868 3540..4205 +
1691683589.7080424-CDS-L-elsbetiae_contig4868:3539..42051691683589.7080424-CDS-L-elsbetiae_contig4868:3539..4205Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig4868 3540..4205 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig4868.12781.1prot_L-elsbetiae_contig4868.12781.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig4868 3540..4205 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig4868.12781.1

>prot_L-elsbetiae_contig4868.12781.1 ID=prot_L-elsbetiae_contig4868.12781.1|Name=mRNA_L-elsbetiae_contig4868.12781.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=222bp
GVLAWVGSFLLHLPLLCGDPLCLLLTLLIFAKVILQFSADIQSFTPSQSA
YPVHATTPIVFRNSGSAPTRNRPPLISSDALRAFFTDIYAVVSTDAALPS
PVSSRPTLDPSAVISTRTRGRAAAAAGTPRPAVNYGFDTSDSVALPSLSP
VPKHQSTSPPALPDVTRPSVALPTLPTTALPVPEDSVPRQTSVSPSTCCP
PYPSPATPLAPLMGPGPPLSVE
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mRNA from alignment at L-elsbetiae_contig4868:3540..4206+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig4868.12781.1 ID=mRNA_L-elsbetiae_contig4868.12781.1|Name=mRNA_L-elsbetiae_contig4868.12781.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=667bp|location=Sequence derived from alignment at L-elsbetiae_contig4868:3540..4206+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGTATTGGCTTGGGTCGGCTCGTTTCTCCTTCACCTACCTCTGCTTTG
CGGGGACCCGCTCTGTCTCCTTCTGACTTTGTTGATTTTCGCGAAAGTGA
TCTTACAGTTTAGTGCTGATATTCAATCATTCACCCCCTCGCAAAGTGCC
TACCCCGTCCATGCTACGACCCCGATCGTTTTTCGAAATTCTGGTTCGGC
GCCAACTCGCAATCGTCCGCCTTTAATTTCGTCCGATGCTTTGCGTGCAT
TTTTTACGGACATTTATGCCGTCGTCTCTACGGACGCGGCTTTGCCGTCT
CCGGTGTCGTCCCGGCCGACCCTCGATCCGTCGGCAGTCATTTCTACTCG
TACCCGAGGTAGGGCCGCTGCCGCTGCTGGTACCCCGCGACCCGCTGTTA
ATTACGGTTTCGACACGTCCGACAGCGTTGCCCTTCCTTCTTTGTCTCCC
GTTCCGAAACACCAATCTACGTCGCCACCTGCTCTGCCCGACGTTACTCG
CCCGTCTGTCGCGCTCCCTACCCTCCCAACGACAGCACTTCCAGTGCCTG
AGGATTCAGTGCCGCGACAGACTTCGGTTTCGCCGTCAACTTGTTGTCCT
CCCTACCCTTCCCCTGCCACCCCTTTAGCTCCGTTAATGGGCCCTGGCCC
CCCACTTTCTGTTGAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig4868:3540..4206+

>mRNA_L-elsbetiae_contig4868.12781.1 ID=mRNA_L-elsbetiae_contig4868.12781.1|Name=mRNA_L-elsbetiae_contig4868.12781.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1332bp|location=Sequence derived from alignment at L-elsbetiae_contig4868:3540..4206+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGTATTGGCTTGGGTCGGCTCGTTTCTCCTTCACCTACCTCTGCTTTG
CGGGGACCCGCTCTGTCTCCTTCTGACTTTGTTGATTTTCGCGAAAGTGA
TCTTACAGTTTAGTGCTGATATTCAATCATTCACCCCCTCGCAAAGTGCC
TACCCCGTCCATGCTACGACCCCGATCGTTTTTCGAAATTCTGGTTCGGC
GCCAACTCGCAATCGTCCGCCTTTAATTTCGTCCGATGCTTTGCGTGCAT
TTTTTACGGACATTTATGCCGTCGTCTCTACGGACGCGGCTTTGCCGTCT
CCGGTGTCGTCCCGGCCGACCCTCGATCCGTCGGCAGTCATTTCTACTCG
TACCCGAGGTAGGGCCGCTGCCGCTGCTGGTACCCCGCGACCCGCTGTTA
ATTACGGTTTCGACACGTCCGACAGCGTTGCCCTTCCTTCTTTGTCTCCC
GTTCCGAAACACCAATCTACGTCGCCACCTGCTCTGCCCGACGTTACTCG
CCCGTCTGTCGCGCTCCCTACCCTCCCAACGACAGCACTTCCAGTGCCTG
AGGATTCAGTGCCGCGACAGACTTCGGTTTCGCCGTCAACTTGTTGTCCT
CCCTACCCTTCCCCTGCCACCCCTTTAGCTCCGTTAATGGGCCCTGGCCC
CCCACTTTCTGTTGAGGGGGTATTGGCTTGGGTCGGCTCGTTTCTCCTTC
ACCTACCTCTGCTTTGCGGGGACCCGCTCTGTCTCCTTCTGACTTTGTTG
ATTTTCGCGAAAGTGATCTTACAGTTTAGTGCTGATATTCAATCATTCAC
CCCCTCGCAAAGTGCCTACCCCGTCCATGCTACGACCCCGATCGTTTTTC
GAAATTCTGGTTCGGCGCCAACTCGCAATCGTCCGCCTTTAATTTCGTCC
GATGCTTTGCGTGCATTTTTTACGGACATTTATGCCGTCGTCTCTACGGA
CGCGGCTTTGCCGTCTCCGGTGTCGTCCCGGCCGACCCTCGATCCGTCGG
CAGTCATTTCTACTCGTACCCGAGGTAGGGCCGCTGCCGCTGCTGGTACC
CCGCGACCCGCTGTTAATTACGGTTTCGACACGTCCGACAGCGTTGCCCT
TCCTTCTTTGTCTCCCGTTCCGAAACACCAATCTACGTCGCCACCTGCTC
TGCCCGACGTTACTCGCCCGTCTGTCGCGCTCCCTACCCTCCCAACGACA
GCACTTCCAGTGCCTGAGGATTCAGTGCCGCGACAGACTTCGGTTTCGCC
GTCAACTTGTTGTCCTCCCTACCCTTCCCCTGCCACCCCTTTAGCTCCGT
TAATGGGCCCTGGCCCCCCACTTTCTGTTGAG
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