mRNA_L-elsbetiae_contig10084.125.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10084.125.1
Unique NamemRNA_L-elsbetiae_contig10084.125.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10084.125.1 vs. uniprot
Match: A0A6H5L149_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L149_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 1.780e-24
Identity = 48/72 (66.67%), Postives = 60/72 (83.33%), Query Frame = 1 
Query:    1 FLRGVHLYGRT-WEAVASLVVTRTVLQIRTHSQKYFAKIDGGEMFPEEPYPSQHDVAAGKASAFAGAFLYDP 213
            FLRGV  + R  W  +A+L+ TRTVLQIRTH+QKY+AK+D GE FP+EPYPSQH+ AAGK+SA AGA+LY+P
Sbjct:   18 FLRGVRRFKRNNWVGIATLLPTRTVLQIRTHAQKYYAKVDKGEPFPDEPYPSQHEAAAGKSSASAGAYLYEP 89
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BLAST of mRNA_L-elsbetiae_contig10084.125.1 vs. uniprot
Match: D7FXQ4_ECTSI (HTH myb-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXQ4_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 1.430e-22
Identity = 46/73 (63.01%), Postives = 58/73 (79.45%), Query Frame = 1 
Query:    1 FLRGVHLYGRT-WEAVASLVVTRTVLQIRTHSQKYFAKIDGGEMFPEEPYPSQHDVAAGKASAFAGAFLYDPP 216
            FLRGV L+ R+  EAVAS++ TRT+LQ+RTH+QKYF K+D GE FP EPYPSQ+D AAG+A   AGA++Y  P
Sbjct:   18 FLRGVELFKRSDLEAVASMLPTRTILQVRTHAQKYFDKVDKGEPFPNEPYPSQYDRAAGRAGVAAGAYMYSAP 90
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BLAST of mRNA_L-elsbetiae_contig10084.125.1 vs. uniprot
Match: A0A6H5KVV5_9PHAE (HTH myb-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVV5_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 4.560e-22
Identity = 46/73 (63.01%), Postives = 58/73 (79.45%), Query Frame = 1 
Query:    1 FLRGVHLYGRT-WEAVASLVVTRTVLQIRTHSQKYFAKIDGGEMFPEEPYPSQHDVAAGKASAFAGAFLYDPP 216
            FLRGV L+ R+  EAVAS++ TRT+LQ+RTH+QKYF K+D GE FP EPYPSQ+D AAG+A   AGA++Y  P
Sbjct:   18 FLRGVELFKRSDLEAVASMLPTRTILQVRTHAQKYFDKVDKGEPFPTEPYPSQYDRAAGRAGVAAGAYMYSAP 90
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BLAST of mRNA_L-elsbetiae_contig10084.125.1 vs. uniprot
Match: D8LPL1_ECTSI (HTH myb-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPL1_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 6.450e-14
Identity = 32/53 (60.38%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:   49 SLVVTRTVLQIRTHSQKYFAKIDGGEMFPEEPYPSQHDVAAGKASAFAGAFLY 207
            +LV TR+ LQIRTH+QKYF KI+ GE FP +PYPSQ+D A+GK+    GA+ Y
Sbjct:   32 ALVPTRSALQIRTHAQKYFDKIERGEKFPAQPYPSQYDAASGKSCIARGAYEY 84
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BLAST of mRNA_L-elsbetiae_contig10084.125.1 vs. uniprot
Match: A0A6H5JC35_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC35_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 3.410e-13
Identity = 32/66 (48.48%), Postives = 45/66 (68.18%), Query Frame = 1 
Query:    1 FLRGVHLYGRTWEAVASLVVTRTVLQIRTHSQKYFAKIDGGEMFPEEPYPSQHDVAAGKASAFAGA 198
            FL+G+ L+G+ W+ +A +V TR+ +Q+RTH QKYF K+D GE FPEEPY S    A  +  + A A
Sbjct:   18 FLQGLVLHGKNWDLIAPIVKTRSAVQVRTHGQKYFKKVDKGERFPEEPYESMFIKARHQTLSSASA 83
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BLAST of mRNA_L-elsbetiae_contig10084.125.1 vs. uniprot
Match: D7FXJ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXJ4_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 6.170e-12
Identity = 30/48 (62.50%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    1 FLRGVHLYGRT-WEAVASLVVTRTVLQIRTHSQKYFAKIDGGEMFPEE 141
            FLRGV  + R  W  +A+L+ TRTVLQIRTH+QKY+AK+D GE FP+E
Sbjct:   23 FLRGVRRFKRNNWVGIATLLPTRTVLQIRTHAQKYYAKVDKGEPFPDE 70
[Close]
BLAST of mRNA_L-elsbetiae_contig10084.125.1 vs. uniprot
Match: A0A1V9Z247_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z247_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 5.070e-9
Identity = 31/55 (56.36%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:    1 FLRGVHLYGRTWEAVASLVVTRTVLQIRTHSQKYFAKID-------GGEMFPEEP 144
            FL+G+HLYGR W+ VAS + TRT  QIR+H+QKYFAK+        GGE  PE P
Sbjct:   31 FLQGLHLYGREWKRVASKIKTRTSAQIRSHAQKYFAKLAKDAEMGLGGEK-PENP 84
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BLAST of mRNA_L-elsbetiae_contig10084.125.1 vs. uniprot
Match: A0A7S1C6P3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C6P3_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 7.230e-9
Identity = 23/38 (60.53%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:    1 FLRGVHLYGRTWEAVASLVVTRTVLQIRTHSQKYFAKI 114
            F++G+ LYGR W+ VAS++ +RTV+QIRTH+QKYF K+
Sbjct:   31 FVKGLELYGREWKKVASMIPSRTVVQIRTHAQKYFQKL 68
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BLAST of mRNA_L-elsbetiae_contig10084.125.1 vs. uniprot
Match: A0A835Z7M4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7M4_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 8.940e-9
Identity = 22/38 (57.89%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    1 FLRGVHLYGRTWEAVASLVVTRTVLQIRTHSQKYFAKI 114
            FL+G+  +G+ W+ +ASL+ TRTV+QIRTH+QKYF K+
Sbjct:   14 FLKGLDAHGKAWKKIASLIKTRTVVQIRTHAQKYFQKL 51
[Close]
BLAST of mRNA_L-elsbetiae_contig10084.125.1 vs. uniprot
Match: D7G656_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G656_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 1.880e-8
Identity = 25/38 (65.79%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:    1 FLRGVHLYGRTWEAVASLVVTRTVLQIRTHSQKYFAKI 114
            FLRG+ L+G+ W+ +ASL+ TRTV+QIRTH+QKYF KI
Sbjct:   17 FLRGLELHGKGWKKIASLIKTRTVVQIRTHAQKYFQKI 54
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10084.125.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L149_9PHAE1.780e-2466.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXQ4_ECTSI1.430e-2263.01HTH myb-type domain-containing protein n=1 Tax=Ect... [more]
A0A6H5KVV5_9PHAE4.560e-2263.01HTH myb-type domain-containing protein n=1 Tax=Ect... [more]
D8LPL1_ECTSI6.450e-1460.38HTH myb-type domain-containing protein n=1 Tax=Ect... [more]
A0A6H5JC35_9PHAE3.410e-1348.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXJ4_ECTSI6.170e-1262.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1V9Z247_9STRA5.070e-956.36Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A7S1C6P3_9STRA7.230e-960.53Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A835Z7M4_9STRA8.940e-957.89Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
D7G656_ECTSI1.880e-865.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10084contigL-elsbetiae_contig10084:160..1198 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.8
Seed ortholog evalue2.9e-07
Seed eggNOG ortholog2880.D7G4J2
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
EggNOG OGs2E7WS@1,2SEEY@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size218
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815240.509167-CDS-L-elsbetiae_contig10084:159..3001622815240.509167-CDS-L-elsbetiae_contig10084:159..300Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10084 160..300 +
1691682790.242871-CDS-L-elsbetiae_contig10084:159..3001691682790.242871-CDS-L-elsbetiae_contig10084:159..300Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10084 160..300 +
1622815240.519856-CDS-L-elsbetiae_contig10084:1121..11961622815240.519856-CDS-L-elsbetiae_contig10084:1121..1196Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10084 1122..1196 +
1691682790.2533252-CDS-L-elsbetiae_contig10084:1121..11961691682790.2533252-CDS-L-elsbetiae_contig10084:1121..1196Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10084 1122..1196 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10084.125.1prot_L-elsbetiae_contig10084.125.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10084 160..1196 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10084.125.1

>prot_L-elsbetiae_contig10084.125.1 ID=prot_L-elsbetiae_contig10084.125.1|Name=mRNA_L-elsbetiae_contig10084.125.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=72bp
FLRGVHLYGRTWEAVASLVVTRTVLQIRTHSQKYFAKIDGGEMFPEEPYP
SQHDVAAGKASAFAGAFLYDPP
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mRNA from alignment at L-elsbetiae_contig10084:160..1198+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10084.125.1 ID=mRNA_L-elsbetiae_contig10084.125.1|Name=mRNA_L-elsbetiae_contig10084.125.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1039bp|location=Sequence derived from alignment at L-elsbetiae_contig10084:160..1198+ (Laminarionema elsbetiae ELsaHSoW15)
TTCCTCCGTGGCGTGCACCTCTACGGCCGCACCTGGGAGGCCGTGGCGTC
GCTGGTGGTCACCCGCACCGTCCTGCAGATCAGGACCCACTCCCAGAAGT
ACTTCGCCAAGATCGACGGCGGAGAGATGTTCCCAGAAGAGGTGTGCGTG
CGTGCGTGCGTGCGTGCGCCCACTCGTTGCACTGCTGCGTTTGCATGGGG
CACGAGAAGCGTGCATTGGGGAGGGTGGGGCCAGCTGGTCGTCGGCTCTG
GTTCTGCGCCGATCCTAGGATTGCAATGCGGCTGAAAATGGTCAAGCTTT
ACACACGATGCGTTTGTAACCCCCCCCCAAAAAACAAACAAATCGAGGGG
GAGCCGCTCCGTCTCTTATCTCTTATAACCAAGAGCTCCTAGTTGGCACT
TGGTACTTTGGCGCTCGTCTACGCACGCAAATACATCAAAATATCAGACT
ACATACATACACACGTATGGTATGCATCCATCGTAGAGAGTAATTTGAGA
GCGCTCATCATGTACGTGCGCCCTGCTGACGAAAAAGCCATCAACTGGGG
CCACCATCACGAAAACACACAGAAGGTGGAAAGGCCGGTCGCGGGGACAT
AGCATCACGCCCGCGCCCTGTACCCCCCCCCCCCCCCCTCAACTTTCGCG
TCCAATCTTGGGAGGCACGGTGCTAAACCCTTGCCTCTCGTCCATTACCT
AAAGCACGTGCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCTTTTTTTTTT
TTTTTTCTCCCCTCTTCTTTTNNNNNNNNNNCCACGTTCCCGGCCCAACT
GGGGGGGGCCCGGGGCCAACCCCTTGCCCCCTCCCCCTCCCCCACCCCCC
GCCCCCCCCCCCCCCCCCTCGCGCTCTTATGTTTTGTTTCTGTTTTTCCC
CGATTCTGCTTTCGTTGCTCGCGCGTCCAAACTGGTTGCCTCTTCCTGGC
TGCCTGTCCCAGCCATACCCCAGCCAGCACGACGTCGCGGCAGGGAAAGC
GAGTGCATTCGCCGGCGCTTTCCTCTACGACCCGCCGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10084:160..1198+

>mRNA_L-elsbetiae_contig10084.125.1 ID=mRNA_L-elsbetiae_contig10084.125.1|Name=mRNA_L-elsbetiae_contig10084.125.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=432bp|location=Sequence derived from alignment at L-elsbetiae_contig10084:160..1198+ (Laminarionema elsbetiae ELsaHSoW15)
TTCCTCCGTGGCGTGCACCTCTACGGCCGCACCTGGGAGGCCGTGGCGTC
GCTGGTGGTCACCCGCACCGTCCTGCAGATCAGGACCCACTCCCAGAAGT
ACTTCGCCAAGATCGACGGCGGAGAGATGTTCCCAGAAGAGTTCCTCCGT
GGCGTGCACCTCTACGGCCGCACCTGGGAGGCCGTGGCGTCGCTGGTGGT
CACCCGCACCGTCCTGCAGATCAGGACCCACTCCCAGAAGTACTTCGCCA
AGATCGACGGCGGAGAGATGTTCCCAGAAGAGCCATACCCCAGCCAGCAC
GACGTCGCGGCAGGGAAAGCGAGTGCATTCGCCGGCGCTTTCCTCTACGA
CCCGCCGCCATACCCCAGCCAGCACGACGTCGCGGCAGGGAAAGCGAGTG
CATTCGCCGGCGCTTTCCTCTACGACCCGCCG
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