mRNA_L-elsbetiae_contig10084.126.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10084.126.1
Unique NamemRNA_L-elsbetiae_contig10084.126.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10084.126.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10084contigL-elsbetiae_contig10084:1323..2294 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size651
Cds size648
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815240.4604194-CDS-L-elsbetiae_contig10084:1322..17561622815240.4604194-CDS-L-elsbetiae_contig10084:1322..1756Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10084 1323..1756 +
1691682790.2213027-CDS-L-elsbetiae_contig10084:1322..17561691682790.2213027-CDS-L-elsbetiae_contig10084:1322..1756Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10084 1323..1756 +
1622815240.4732945-CDS-L-elsbetiae_contig10084:2079..22931622815240.4732945-CDS-L-elsbetiae_contig10084:2079..2293Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10084 2080..2293 +
1691682790.233928-CDS-L-elsbetiae_contig10084:2079..22931691682790.233928-CDS-L-elsbetiae_contig10084:2079..2293Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10084 2080..2293 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10084.126.1prot_L-elsbetiae_contig10084.126.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10084 1323..2293 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10084.126.1

>prot_L-elsbetiae_contig10084.126.1 ID=prot_L-elsbetiae_contig10084.126.1|Name=mRNA_L-elsbetiae_contig10084.126.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=216bp
VGDNDAIVNHHTANSTLPGFPSSEQPPLFSRQQWGGGGGGDRGNLSGETE
PCPPLPSLLVCGEQQQVAEGAARGPREPASDAGASFIVPPPPPPPPPPPA
GGAFPSGCAGDSGSSGDNSGSPSSFGFEFAGPGRHDSAGAASGVWIDTSG
SAPPYPVRRGSATSFLNNNGDDGDGDDDDDRSRWPQHNRTAAPVASPPPS
PAPPPPRASAVPPFGC
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mRNA from alignment at L-elsbetiae_contig10084:1323..2294+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10084.126.1 ID=mRNA_L-elsbetiae_contig10084.126.1|Name=mRNA_L-elsbetiae_contig10084.126.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=972bp|location=Sequence derived from alignment at L-elsbetiae_contig10084:1323..2294+ (Laminarionema elsbetiae ELsaHSoW15)
GTGGGCGACAACGACGCGATCGTGAACCACCACACGGCCAACAGCACCCT
GCCTGGCTTCCCCTCGTCAGAGCAGCCGCCGTTGTTCTCGCGGCAGCAAT
GGGGCGGCGGCGGCGGCGGCGACAGGGGCAACCTCAGCGGGGAGACCGAG
CCTTGCCCCCCTCTCCCCAGCCTCCTGGTCTGCGGGGAGCAACAGCAAGT
GGCAGAGGGAGCAGCAAGAGGGCCCAGGGAGCCCGCGAGCGATGCGGGTG
CGAGCTTCATCGTACCACCGCCGCCGCCGCCGCCGCCGCCGCCGCCCGCA
GGAGGCGCGTTTCCGTCGGGGTGCGCCGGCGACAGCGGCAGCAGCGGCGA
TAATAGCGGTAGCCCCAGCAGCTTCGGCTTCGAGTTCGCCGGCCCCGGCC
GGCACGATTCCGCCGGTGCCGCCTCCGGCGTCTGGTGAGAGCGTTTTGAC
ATTACTCTCTGGTGCCTCGGATTGGGTCCGCCTGATCCCGCTGGGCCTTC
TTCGGTCCGGGAGGCGTCGGCCGCAACCTGGAGCAGGGCGCGAGCAGAAG
CCCCGGTTGTCGGGGAGTGTTTTCGGCCCGGGTTTTCTCGCGAGTGCAGC
CTCGGAGCCCCCTCTTTTTTTGTGTTCACCACCCGCTGCATGGCGTTACA
TACATGCTGTATGTTGTATGTATGTCGGTTGCTCTCTCTTCTTCTGTATT
TACACCTTTTCTCCCTTCCCGCCCCCCCCCCCCCTCCTCCCTCACAACCC
TCTCCAGGATCGACACAAGCGGTAGCGCCCCCCCGTACCCTGTCCGACGG
GGGTCTGCGACGTCGTTCCTGAACAACAACGGCGACGATGGTGATGGCGA
CGACGACGACGACCGCAGCCGATGGCCCCAGCACAACCGCACCGCGGCGC
CTGTGGCTTCTCCCCCCCCCTCGCCCGCTCCACCCCCCCCCCGCGCCTCC
GCGGTCCCTCCCTTCGGCTGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10084:1323..2294+

>mRNA_L-elsbetiae_contig10084.126.1 ID=mRNA_L-elsbetiae_contig10084.126.1|Name=mRNA_L-elsbetiae_contig10084.126.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1296bp|location=Sequence derived from alignment at L-elsbetiae_contig10084:1323..2294+ (Laminarionema elsbetiae ELsaHSoW15)
GTGGGCGACAACGACGCGATCGTGAACCACCACACGGCCAACAGCACCCT
GCCTGGCTTCCCCTCGTCAGAGCAGCCGCCGTTGTTCTCGCGGCAGCAAT
GGGGCGGCGGCGGCGGCGGCGACAGGGGCAACCTCAGCGGGGAGACCGAG
CCTTGCCCCCCTCTCCCCAGCCTCCTGGTCTGCGGGGAGCAACAGCAAGT
GGCAGAGGGAGCAGCAAGAGGGCCCAGGGAGCCCGCGAGCGATGCGGGTG
CGAGCTTCATCGTACCACCGCCGCCGCCGCCGCCGCCGCCGCCGCCCGCA
GGAGGCGCGTTTCCGTCGGGGTGCGCCGGCGACAGCGGCAGCAGCGGCGA
TAATAGCGGTAGCCCCAGCAGCTTCGGCTTCGAGTTCGCCGGCCCCGGCC
GGCACGATTCCGCCGGTGCCGCCTCCGGCGTCTGGTGGGCGACAACGACG
CGATCGTGAACCACCACACGGCCAACAGCACCCTGCCTGGCTTCCCCTCG
TCAGAGCAGCCGCCGTTGTTCTCGCGGCAGCAATGGGGCGGCGGCGGCGG
CGGCGACAGGGGCAACCTCAGCGGGGAGACCGAGCCTTGCCCCCCTCTCC
CCAGCCTCCTGGTCTGCGGGGAGCAACAGCAAGTGGCAGAGGGAGCAGCA
AGAGGGCCCAGGGAGCCCGCGAGCGATGCGGGTGCGAGCTTCATCGTACC
ACCGCCGCCGCCGCCGCCGCCGCCGCCGCCCGCAGGAGGCGCGTTTCCGT
CGGGGTGCGCCGGCGACAGCGGCAGCAGCGGCGATAATAGCGGTAGCCCC
AGCAGCTTCGGCTTCGAGTTCGCCGGCCCCGGCCGGCACGATTCCGCCGG
TGCCGCCTCCGGCGTCTGGATCGACACAAGCGGTAGCGCCCCCCCGTACC
CTGTCCGACGGGGGTCTGCGACGTCGTTCCTGAACAACAACGGCGACGAT
GGTGATGGCGACGACGACGACGACCGCAGCCGATGGCCCCAGCACAACCG
CACCGCGGCGCCTGTGGCTTCTCCCCCCCCCTCGCCCGCTCCACCCCCCC
CCCGCGCCTCCGCGGTCCCTCCCTTCGGCTGCGATCGACACAAGCGGTAG
CGCCCCCCCGTACCCTGTCCGACGGGGGTCTGCGACGTCGTTCCTGAACA
ACAACGGCGACGATGGTGATGGCGACGACGACGACGACCGCAGCCGATGG
CCCCAGCACAACCGCACCGCGGCGCCTGTGGCTTCTCCCCCCCCCTCGCC
CGCTCCACCCCCCCCCCGCGCCTCCGCGGTCCCTCCCTTCGGCTGC
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