mRNA_L-elsbetiae_contig11298.1153.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11298.1153.1
Unique NamemRNA_L-elsbetiae_contig11298.1153.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11298.1153.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11298contigL-elsbetiae_contig11298:4641..5379 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size739
Cds size606
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11298.1153.1prot_L-elsbetiae_contig11298.1153.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11298 4768..5373 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815340.6896102-UTR-L-elsbetiae_contig11298:4640..47671622815340.6896102-UTR-L-elsbetiae_contig11298:4640..4767Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11298 4641..4767 +
1691682848.3706014-UTR-L-elsbetiae_contig11298:4640..47671691682848.3706014-UTR-L-elsbetiae_contig11298:4640..4767Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11298 4641..4767 +
1622815340.7201214-UTR-L-elsbetiae_contig11298:5373..53791622815340.7201214-UTR-L-elsbetiae_contig11298:5373..5379Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11298 5374..5379 +
1691682848.3956041-UTR-L-elsbetiae_contig11298:5373..53791691682848.3956041-UTR-L-elsbetiae_contig11298:5373..5379Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11298 5374..5379 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815340.7096205-CDS-L-elsbetiae_contig11298:4767..53731622815340.7096205-CDS-L-elsbetiae_contig11298:4767..5373Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11298 4768..5373 +
1691682848.3812664-CDS-L-elsbetiae_contig11298:4767..53731691682848.3812664-CDS-L-elsbetiae_contig11298:4767..5373Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11298 4768..5373 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11298.1153.1

>prot_L-elsbetiae_contig11298.1153.1 ID=prot_L-elsbetiae_contig11298.1153.1|Name=mRNA_L-elsbetiae_contig11298.1153.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=202bp
MLLRSAGDRSSVDAVACASLLLLLEGRRGLVEVDDTLQSISTLASAAADC
SRFLTFTRPAGPAVGAGAVAPERSIAATLLLSSAGILVARFRVATFTFSI
SKRVSCHPRSDRERSVSRLSILDDSGAGDMLTIAGEAVPAGAAVEVLFCR
LFEIVDAFCLEGARLLSILAGGVLFEVAQDFVGLVRDALFRSRRDQRDDA
H*
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mRNA from alignment at L-elsbetiae_contig11298:4641..5379+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11298.1153.1 ID=mRNA_L-elsbetiae_contig11298.1153.1|Name=mRNA_L-elsbetiae_contig11298.1153.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=739bp|location=Sequence derived from alignment at L-elsbetiae_contig11298:4641..5379+ (Laminarionema elsbetiae ELsaHSoW15)
CGTTGCCGACGCGTGCTTGCCTGGGCTACTTGTACTACCGGCCCGAGTTC
CGGCGTTGCTGATCTTGCTGCCGGTACCACTGCTTCCCATGCTACTGCTT
TGAGCTCCACTACTACTGCTCCTACTGATGTTGCTTCGCTCTGCTGGCGA
TCGCTCCAGCGTCGATGCCGTCGCCTGCGCTTCGCTCCTGCTCCTGCTAG
AAGGCCGCCGCGGCTTGGTCGAAGTTGACGACACTCTCCAATCGATCTCT
ACGTTGGCTTCCGCAGCCGCCGACTGCTCCCGATTTCTAACTTTCACGCG
CCCCGCTGGGCCAGCGGTAGGAGCGGGAGCTGTTGCACCTGAGCGGTCCA
TCGCGGCCACACTCCTGTTGTCGTCAGCCGGAATCTTGGTGGCGCGCTTC
CGGGTGGCAACGTTTACGTTTTCGATTTCAAAACGTGTATCCTGCCACCC
GCGCAGCGATCGAGAACGATCGGTTTCTCGACTATCGATCTTGGATGATT
CAGGAGCAGGCGATATGCTCACTATTGCGGGTGAAGCCGTGCCGGCCGGG
GCAGCCGTTGAGGTCCTCTTCTGTCGTTTGTTTGAAATTGTTGATGCCTT
TTGCCTCGAGGGTGCCAGGCTCTTGAGCATTCTCGCCGGTGGAGTCCTCT
TTGAGGTCGCTCAAGATTTCGTCGGTCTTGTACGCGATGCACTTTTTCGA
TCGAGGCGTGACCAGCGAGATGATGCCCATTGACCTGCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11298:4641..5379+

>mRNA_L-elsbetiae_contig11298.1153.1 ID=mRNA_L-elsbetiae_contig11298.1153.1|Name=mRNA_L-elsbetiae_contig11298.1153.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1212bp|location=Sequence derived from alignment at L-elsbetiae_contig11298:4641..5379+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTGCTTCGCTCTGCTGGCGATCGCTCCAGCGTCGATGCCGTCGCCTG
CGCTTCGCTCCTGCTCCTGCTAGAAGGCCGCCGCGGCTTGGTCGAAGTTG
ACGACACTCTCCAATCGATCTCTACGTTGGCTTCCGCAGCCGCCGACTGC
TCCCGATTTCTAACTTTCACGCGCCCCGCTGGGCCAGCGGTAGGAGCGGG
AGCTGTTGCACCTGAGCGGTCCATCGCGGCCACACTCCTGTTGTCGTCAG
CCGGAATCTTGGTGGCGCGCTTCCGGGTGGCAACGTTTACGTTTTCGATT
TCAAAACGTGTATCCTGCCACCCGCGCAGCGATCGAGAACGATCGGTTTC
TCGACTATCGATCTTGGATGATTCAGGAGCAGGCGATATGCTCACTATTG
CGGGTGAAGCCGTGCCGGCCGGGGCAGCCGTTGAGGTCCTCTTCTGTCGT
TTGTTTGAAATTGTTGATGCCTTTTGCCTCGAGGGTGCCAGGCTCTTGAG
CATTCTCGCCGGTGGAGTCCTCTTTGAGGTCGCTCAAGATTTCGTCGGTC
TTGTACGCGATGCACTTTTTCGATCGAGGCGTGACCAGCGAGATGATGCC
CATTGAATGTTGCTTCGCTCTGCTGGCGATCGCTCCAGCGTCGATGCCGT
CGCCTGCGCTTCGCTCCTGCTCCTGCTAGAAGGCCGCCGCGGCTTGGTCG
AAGTTGACGACACTCTCCAATCGATCTCTACGTTGGCTTCCGCAGCCGCC
GACTGCTCCCGATTTCTAACTTTCACGCGCCCCGCTGGGCCAGCGGTAGG
AGCGGGAGCTGTTGCACCTGAGCGGTCCATCGCGGCCACACTCCTGTTGT
CGTCAGCCGGAATCTTGGTGGCGCGCTTCCGGGTGGCAACGTTTACGTTT
TCGATTTCAAAACGTGTATCCTGCCACCCGCGCAGCGATCGAGAACGATC
GGTTTCTCGACTATCGATCTTGGATGATTCAGGAGCAGGCGATATGCTCA
CTATTGCGGGTGAAGCCGTGCCGGCCGGGGCAGCCGTTGAGGTCCTCTTC
TGTCGTTTGTTTGAAATTGTTGATGCCTTTTGCCTCGAGGGTGCCAGGCT
CTTGAGCATTCTCGCCGGTGGAGTCCTCTTTGAGGTCGCTCAAGATTTCG
TCGGTCTTGTACGCGATGCACTTTTTCGATCGAGGCGTGACCAGCGAGAT
GATGCCCATTGA
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