mRNA_L-elsbetiae_contig10066.111.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10066.111.1
Unique NamemRNA_L-elsbetiae_contig10066.111.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10066.111.1 vs. uniprot
Match: A0A6H5L6K7_9PHAE (TFIIB-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L6K7_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 1.270e-38
Identity = 75/93 (80.65%), Postives = 78/93 (83.87%), Query Frame = 1 
Query:   22 RCKGCGSTNIEDDPTSGDRACQNCGVVQQENGIVSTVQFSESGGSSNVVGQFVSGDKGRPSGGGAGRGRGRFGHSRDSRETTIQNGKKKIIQV 300
            RC  CG TN  D P SGDRAC  CG V QEN IVS+VQFSESGGSSNVVGQFVSGD+GRPSGGGA RGRGRFG SRDSR+ TIQNGKKKIIQV
Sbjct:   24 RCPSCGGTNFMDQPGSGDRACAECGTVVQENNIVSSVQFSESGGSSNVVGQFVSGDRGRPSGGGAARGRGRFGQSRDSRDATIQNGKKKIIQV 116
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BLAST of mRNA_L-elsbetiae_contig10066.111.1 vs. uniprot
Match: A0A448Z1B8_9STRA (B-related factor 1 n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z1B8_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 2.610e-17
Identity = 48/93 (51.61%), Postives = 64/93 (68.82%), Query Frame = 1 
Query:   25 CKGCGSTNIEDDPTSGDRACQNCGVVQQENGIVSTVQFSE-SGGSSNVVGQFVSGDKGRPSGGGAGRGRGRFGHSRDSRETTIQNGKKKIIQV 300
            C  CGS NIE    +G+  C  CGV+ +EN IVS ++F E +GGSS++VGQFVS    R +  G GRG G +G SRDSRETT+ NG+++I +V
Sbjct:    6 CPNCGSKNIESQGAAGNCVCTECGVIVEENAIVSHMEFVEGAGGSSSMVGQFVSATS-RKAYTGGGRGAGNYGFSRDSRETTLANGRRRIQEV 97
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BLAST of mRNA_L-elsbetiae_contig10066.111.1 vs. uniprot
Match: A0A7S3L4B3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L4B3_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.280e-16
Identity = 46/98 (46.94%), Postives = 62/98 (63.27%), Query Frame = 1 
Query:   25 CKGCGSTNIEDDPTSGDRACQNCGVVQQENGIVSTVQFSE-SGGSSNVVGQFVSGDKGRPSGGGA-----GRGRGRFGHSRDSRETTIQNGKKKIIQV 300
            C  CGS ++E    SG   C  CGVV +EN IVS+V+F E +GGS+ +VG+FVSG   +   GG      G  R  +G SRDSRETT+ NG++KI ++
Sbjct:   34 CPDCGSRDVEQQDASGASVCTECGVVVEENAIVSSVEFVEGAGGSATMVGKFVSGSSSKAFTGGGPXXXXGFRRSNWGFSRDSRETTLANGRRKIQEI 131
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BLAST of mRNA_L-elsbetiae_contig10066.111.1 vs. uniprot
Match: A0A1E7FX19_9STRA (B-related factor 1 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FX19_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 2.120e-16
Identity = 49/95 (51.58%), Postives = 62/95 (65.26%), Query Frame = 1 
Query:   19 PRCKGCGSTNIEDDPTSGDRACQNCGVVQQENGIVSTVQFSES-GGSSNVVGQFVSGDKGRPSGGGAGRGRGRFGHSRDSRETTIQNGKKKIIQV 300
            P C  CGS +IE    SG   C  CGV+ +EN IVS V+F E  GG+S++VGQFVS    R +  G GR  G +G SRDSRETT+ NG++KI +V
Sbjct:    8 PVCPNCGSKHIELQGASGASVCTECGVILEENAIVSNVEFVEGQGGASSMVGQFVSATS-RKAYTGGGRAGGNYGFSRDSRETTLANGRRKIQEV 101
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BLAST of mRNA_L-elsbetiae_contig10066.111.1 vs. uniprot
Match: B7GD27_PHATC (B-related factor 1 n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GD27_PHATC)

HSP 1 Score: 80.1 bits (196), Expect = 2.030e-15
Identity = 48/99 (48.48%), Postives = 62/99 (62.63%), Query Frame = 1 
Query:   25 CKGCGSTNIEDDPTSGDRACQNCGVVQQENGIVSTVQFSE-SGGSSNVVGQFVSGDKGRPSGGGAG------RGRGRFGHSRDSRETTIQNGKKKIIQV 300
            C  CGST+IE    SG   C  CGVV +EN IVS V+F E +GG+S++VGQFVS    +   GG G          R+G SRDSRETT+ NG+++I +V
Sbjct:   69 CPNCGSTSIEQHDASGASVCTECGVVVEENAIVSAVEFVEGAGGASSMVGQFVSATSSKAYTGGPGGXXXXXXXXXRYGFSRDSRETTLANGRRRIQEV 167
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BLAST of mRNA_L-elsbetiae_contig10066.111.1 vs. uniprot
Match: A0A2R7W7U2_ONCFA (TFIIB-type domain-containing protein n=2 Tax=Pentatomomorpha TaxID=33357 RepID=A0A2R7W7U2_ONCFA)

HSP 1 Score: 74.3 bits (181), Expect = 1.990e-14
Identity = 43/94 (45.74%), Postives = 58/94 (61.70%), Query Frame = 1 
Query:   22 RCKGCGSTNIEDDPTSGDRACQNCGVVQQENGIVSTVQFSE-SGGSSNVVGQFVSGDKGRPSGGGAGRGRGRFGHSRDSRETTIQNGKKKIIQV 300
            +CK CGS+++E DP+ GD  C NCG V ++N IVS VQF E S G  + +GQFV+ D    SGG  G G       R+SRE T+QN ++ I  +
Sbjct:    5 KCKSCGSSDVEVDPSRGDTVCTNCGTVLEDNAIVSEVQFEENSHGVCSALGQFVASDS---SGGCQGFGNNFQSGGRESREVTLQNARRSISNL 95
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BLAST of mRNA_L-elsbetiae_contig10066.111.1 vs. uniprot
Match: A0A7R9U6Q5_9STRA (B-related factor 1 (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U6Q5_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 3.340e-14
Identity = 43/93 (46.24%), Postives = 59/93 (63.44%), Query Frame = 1 
Query:   22 RCKGCGSTNIEDDPTSGDRACQNCGVVQQENGIVSTVQFSESGGSSNVVGQFVSGDKGRPSGGGAGRGRGRFGHSRDSRETTIQNGKKKIIQV 300
            +C  C S  IE +   GD  C  CG V +EN IVS+++F E+GG   V GQF+S    +P      RGRGR+ +SRDSR+TT+ NG+++I QV
Sbjct:   15 QCPECASLEIEVNDAGGDAVCVRCGTVVEENAIVSSIEFEETGG---VRGQFMSATAQKPYSSSV-RGRGRYSYSRDSRDTTLANGRRQIGQV 103
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BLAST of mRNA_L-elsbetiae_contig10066.111.1 vs. uniprot
Match: A0A1Z5JG53_FISSO (B-related factor 1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JG53_FISSO)

HSP 1 Score: 75.5 bits (184), Expect = 8.530e-14
Identity = 45/94 (47.87%), Postives = 59/94 (62.77%), Query Frame = 1 
Query:   25 CKGCGSTNIEDDPTSGDRACQNCGVVQQENGIVSTVQFSE-SGGSSNVVGQFVSGDKGRP-SGGGAGRGRGRFGHSRDSRETTIQNGKKKIIQV 300
            C  CG   IE    SG   C  CG+V +EN IVS V+F E +GGSSN+VGQFVS    +  +G   GR   R+  S+DSRETT+ NG+++I +V
Sbjct:   36 CPNCGGKAIEQHEASGASICIECGIVVEENAIVSAVEFVEGAGGSSNMVGQFVSASSSKAYTGAAVGR---RYAFSKDSRETTLANGRRRIQEV 126
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BLAST of mRNA_L-elsbetiae_contig10066.111.1 vs. uniprot
Match: A0A7S4S7X9_9STRA (B-related factor 1 n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4S7X9_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.170e-13
Identity = 43/93 (46.24%), Postives = 60/93 (64.52%), Query Frame = 1 
Query:   25 CKGCGSTNIEDDPTSGDRACQNCGVVQQENGIVSTVQFSE-SGGSSNVVGQFVSGDKGRPSGGGAGRGRGRFGHSRDSRETTIQNGKKKIIQV 300
            C  CGST+IE    SG   C  CGVV +EN IVS+V++ E S G S +VG+FV+ ++ +   GG+G   G +G  RDSRE T+ NG+++I  V
Sbjct:   32 CPSCGSTDIESHEASGASICTECGVVVEENAIVSSVEYVEGSNGQSGMVGKFVAQNRSKAYSGGSGM-PGAYGFGRDSREQTLANGRRRIQDV 123
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BLAST of mRNA_L-elsbetiae_contig10066.111.1 vs. uniprot
Match: B4G2P5_DROPE (B-related factor 1 n=7 Tax=obscura group TaxID=32355 RepID=B4G2P5_DROPE)

HSP 1 Score: 74.3 bits (181), Expect = 2.180e-13
Identity = 44/92 (47.83%), Postives = 56/92 (60.87%), Query Frame = 1 
Query:   22 RCKGCGSTNIEDDPTSGDRACQNCGVVQQENGIVSTVQFSESGGSSNVVGQFVSGDKGRPSGGGAGRGRGRF--GHSRDSRETTIQNGKKKI 291
            +C+ CGS  IE+D T GDR C NCG V +++ IVS VQF E G  +  +GQFVS +    SGG    G G+F  G   +SRE TI+  KK I
Sbjct:    6 KCRNCGSNEIEEDNTRGDRVCTNCGSVLEDSLIVSEVQFEEVGHGAAAIGQFVSAES---SGGATNYGYGKFQVGSGTESREVTIKKAKKDI 94
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10066.111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6K7_9PHAE1.270e-3880.65TFIIB-type domain-containing protein n=2 Tax=Ectoc... [more]
A0A448Z1B8_9STRA2.610e-1751.61B-related factor 1 n=1 Tax=Pseudo-nitzschia multis... [more]
A0A7S3L4B3_9STRA1.280e-1646.94Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]
A0A1E7FX19_9STRA2.120e-1651.58B-related factor 1 n=1 Tax=Fragilariopsis cylindru... [more]
B7GD27_PHATC2.030e-1548.48B-related factor 1 n=1 Tax=Phaeodactylum tricornut... [more]
A0A2R7W7U2_ONCFA1.990e-1445.74TFIIB-type domain-containing protein n=2 Tax=Penta... [more]
A0A7R9U6Q5_9STRA3.340e-1446.24B-related factor 1 (Fragment) n=1 Tax=Pinguiococcu... [more]
A0A1Z5JG53_FISSO8.530e-1447.87B-related factor 1 n=2 Tax=Fistulifera solaris Tax... [more]
A0A7S4S7X9_9STRA1.170e-1346.24B-related factor 1 n=2 Tax=Ditylum brightwellii Ta... [more]
B4G2P5_DROPE2.180e-1347.83B-related factor 1 n=7 Tax=obscura group TaxID=323... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10066contigL-elsbetiae_contig10066:1396..1695 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score152.1
Seed ortholog evalue1.3e-34
Seed eggNOG ortholog2880.D8LS89
Preferred nameBRF1
KEGG koko:K15196
Hectar predicted targeting categoryother localisation
GOsGO:0000126,GO:0000976,GO:0000992,GO:0000994,GO:0000995,GO:0001006,GO:0001016,GO:0001025,GO:0001032,GO:0001067,GO:0001112,GO:0001120,GO:0001156,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0006139,GO:0006259,GO:0006351,GO:0006352,GO:0006355,GO:0006359,GO:0006383,GO:0006384,GO:0006399,GO:0006725,GO:0006807,GO:0008134,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009303,GO:0009304,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0015074,GO:0016043,GO:0016070,GO:0016072,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019899,GO:0022607,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031974,GO:0031981,GO:0032091,GO:0032196,GO:0032774,GO:0032991,GO:0034367,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043393,GO:0043487,GO:0043488,GO:0043496,GO:0043565,GO:0043933,GO:0044085,GO:0044092,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044798,GO:0045893,GO:0045935,GO:0045945,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051098,GO:0051100,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0061013,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070063,GO:0070893,GO:0070897,GO:0070898,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090074,GO:0090304,GO:0090576,GO:0097159,GO:0097659,GO:0098781,GO:0140110,GO:0140223,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902680,GO:1903311,GO:1903506,GO:1903508,GO:1990837,GO:2000112,GO:2001141
EggNOG free text desc.DNA-templated transcriptional preinitiation complex assembly
EggNOG OGsCOG1405@1,KOG1598@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03021
Exons1
Model size300
Cds size300
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815239.2332525-CDS-L-elsbetiae_contig10066:1395..16951622815239.2332525-CDS-L-elsbetiae_contig10066:1395..1695Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10066 1396..1695 -
1691682789.4194803-CDS-L-elsbetiae_contig10066:1395..16951691682789.4194803-CDS-L-elsbetiae_contig10066:1395..1695Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10066 1396..1695 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10066.111.1prot_L-elsbetiae_contig10066.111.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10066 1396..1695 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10066.111.1

>prot_L-elsbetiae_contig10066.111.1 ID=prot_L-elsbetiae_contig10066.111.1|Name=mRNA_L-elsbetiae_contig10066.111.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=100bp
MARPRVPRCKGCGSTNIEDDPTSGDRACQNCGVVQQENGIVSTVQFSESG
GSSNVVGQFVSGDKGRPSGGGAGRGRGRFGHSRDSRETTIQNGKKKIIQV
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mRNA from alignment at L-elsbetiae_contig10066:1396..1695-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10066.111.1 ID=mRNA_L-elsbetiae_contig10066.111.1|Name=mRNA_L-elsbetiae_contig10066.111.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=300bp|location=Sequence derived from alignment at L-elsbetiae_contig10066:1396..1695- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGCGGCCCCGCGTGCCGCGATGCAAAGGCTGCGGGAGTACGAATAT
TGAGGACGACCCAACGTCCGGCGATCGAGCGTGCCAAAACTGCGGCGTCG
TTCAGCAGGAGAACGGGATCGTGTCGACGGTGCAGTTCAGCGAGTCCGGC
GGGTCTTCCAACGTGGTGGGGCAGTTCGTCTCGGGGGATAAAGGGAGGCC
TAGCGGTGGTGGTGCTGGCAGGGGTCGAGGAAGGTTTGGACACAGCCGAG
ACTCGCGCGAGACCACCATCCAAAACGGAAAGAAGAAGATCATCCAGGTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10066:1396..1695-

>mRNA_L-elsbetiae_contig10066.111.1 ID=mRNA_L-elsbetiae_contig10066.111.1|Name=mRNA_L-elsbetiae_contig10066.111.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=600bp|location=Sequence derived from alignment at L-elsbetiae_contig10066:1396..1695- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGCGGCCCCGCGTGCCGCGATGCAAAGGCTGCGGGAGTACGAATAT
TGAGGACGACCCAACGTCCGGCGATCGAGCGTGCCAAAACTGCGGCGTCG
TTCAGCAGGAGAACGGGATCGTGTCGACGGTGCAGTTCAGCGAGTCCGGC
GGGTCTTCCAACGTGGTGGGGCAGTTCGTCTCGGGGGATAAAGGGAGGCC
TAGCGGTGGTGGTGCTGGCAGGGGTCGAGGAAGGTTTGGACACAGCCGAG
ACTCGCGCGAGACCACCATCCAAAACGGAAAGAAGAAGATCATCCAGGTT
ATGGCGCGGCCCCGCGTGCCGCGATGCAAAGGCTGCGGGAGTACGAATAT
TGAGGACGACCCAACGTCCGGCGATCGAGCGTGCCAAAACTGCGGCGTCG
TTCAGCAGGAGAACGGGATCGTGTCGACGGTGCAGTTCAGCGAGTCCGGC
GGGTCTTCCAACGTGGTGGGGCAGTTCGTCTCGGGGGATAAAGGGAGGCC
TAGCGGTGGTGGTGCTGGCAGGGGTCGAGGAAGGTTTGGACACAGCCGAG
ACTCGCGCGAGACCACCATCCAAAACGGAAAGAAGAAGATCATCCAGGTT
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