mRNA_L-elsbetiae_contig10062.107.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10062.107.1
Unique NamemRNA_L-elsbetiae_contig10062.107.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10062.107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10062contigL-elsbetiae_contig10062:870..5081 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size998
Cds size765
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10062.107.1prot_L-elsbetiae_contig10062.107.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10062 1102..5081 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815238.940804-UTR-L-elsbetiae_contig10062:869..11011622815238.940804-UTR-L-elsbetiae_contig10062:869..1101Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10062 870..1101 +
1691682789.2456837-UTR-L-elsbetiae_contig10062:869..11011691682789.2456837-UTR-L-elsbetiae_contig10062:869..1101Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10062 870..1101 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815238.9563365-CDS-L-elsbetiae_contig10062:1101..11421622815238.9563365-CDS-L-elsbetiae_contig10062:1101..1142Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10062 1102..1142 +
1691682789.269003-CDS-L-elsbetiae_contig10062:1101..11421691682789.269003-CDS-L-elsbetiae_contig10062:1101..1142Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10062 1102..1142 +
1622815238.9670959-CDS-L-elsbetiae_contig10062:4357..50811622815238.9670959-CDS-L-elsbetiae_contig10062:4357..5081Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10062 4358..5081 +
1691682789.2809546-CDS-L-elsbetiae_contig10062:4357..50811691682789.2809546-CDS-L-elsbetiae_contig10062:4357..5081Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10062 4358..5081 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10062.107.1

>prot_L-elsbetiae_contig10062.107.1 ID=prot_L-elsbetiae_contig10062.107.1|Name=mRNA_L-elsbetiae_contig10062.107.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=255bp
MRQHLLPLGIANNRDVDIMSGNVPGGRTSDSNNNSRDNKSRGSTNQSDSA
MESDGEKDGGGDEADLLALLRRLGLARSSSSKGGNGGGGGGGTGGKNGGR
SGGGGNIPRRENKWTPAPAPATRPPQSPHGHLGVNSSSGAPGSAGIKTAG
RHSSSAAHNHNGHERSQSDDGVSAGGRYPHRSGGGIGSCGGGDDDDDRAR
RLHAGSHGAPPAPPAGGDAGGRAGSGAPAPAPAGRTAGAAKTVASLPAAA
AAAGG
back to top

mRNA from alignment at L-elsbetiae_contig10062:870..5081+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10062.107.1 ID=mRNA_L-elsbetiae_contig10062.107.1|Name=mRNA_L-elsbetiae_contig10062.107.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4212bp|location=Sequence derived from alignment at L-elsbetiae_contig10062:870..5081+ (Laminarionema elsbetiae ELsaHSoW15)
GGTTGTCCCCCGGCCAGATTCGAAGAGCAAACCTCGCCCGCCTGCAGCTA
TTTCTCCAGCGGTAGCTTGCACCCTCGTGTGTTGTCAGCATTGGTGCAGC
ATTCAAGAGCACAACTAAGCACAGCACACCTGGAGTATTTTATTTTCCCC
TCTCAGAAAGCAGCTCTCATCAGCGTTTTGGGGGGAACTTCGAGGGGAGG
GCGAGGGGGGAAATGCTACCCGGCAGTGTTCCATGCGTCAGCATTTGCTC
CCTCTCGGCATCGCTAATAACAGGTGGGTGTCTGCGAGCACTCTCTGTGC
TTTTGTACACAAATCATGTGCTGGGACGTCGGTCCAACGCAACGATTATG
TACACGTCGTCTTGGACAGGCCTCCCCCGCTGGCGTGCTGCTGACGATCG
GGTGCGCTAGGTGTGCCGCGATAGCAGTAGGTTTCGAACGCCGCTTCTAT
TCACACTCCACCCTTTCTTTGGGGTTTTTGTTCGGGTGTTCGGGTTCCCC
GAGAGGTTTTGTACGTGCAGCAGCAGCAGCAGCAGCAGCAGCAGTTATCG
GTAGCAATAACTGCTGTAAACACACACCCATCTAGATTACACACCCTCGA
CTACAAATGTATTAGCTTTTCCCACATTTGTTCAAAATTGGACGCAAACG
TTGCCCCTGTATGGCGTGTCGGAACGTAAAAGCGCGCGCGATCGTCGTCT
GGTAACTGTTGAAAGCTGCACCCCCGACTTCATTATGTTTCATCCAAAAC
TGCGGTCTCCCTACATTTTGACGCCCTGCCTCTTTGGCCAACACACACAC
ACACACACAGAAAACCCAAGAGTTCAGTTGGCCTGGGGGGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGACCTAAGAGAGCAAATCCTGCGCGCGGACC
ACGGGTTGGCGTGTCATCGATATACCTGCACAACAGAGACGCCACGAGCA
TTTGTACTATGTAGACTGCTACTGCTGCTACTACTGTACAAAGCAAATAA
CGAAATACACTGATGTAGCAGGAAGCAAAGCAGCTTGCCATTCTCATTAT
TCACGCGTTTACCACGATAGGGGAGATCAAGCACTGCGTTGGACGCGACG
TTATGTTTACCTCGTTTCTTCTTTCAACAAATATTATCGGGGAGAGAGTT
GTAATCTTGTTGTCGTTGTTTCTTCACATTACAAACCGTTCCGTTCTCTC
CACTCGGTACCTCGGTGAGTCCCTGTCCTACATATTCCGACACTTGATAA
AGTCAATTATCGTGGGTACAGGCTGACTAATACGGAGTTACAACTTACAT
TACCTACAAAGGTGTGTATAGAAGGGATAGGCCCTCGCTAGGTTTTGCAG
GCGTGGTTCTCTTGTCGTGGGGTTTGGTGTAGAGGATACACCGAGTGGGC
TCGGGTGTAGAGCCAGCAGTCGCCTCTGAGAACAGAACGGAGGAATGGGT
GCTGACTCGACCTGTGATACCCCGGCCAAGATATACGATCTTGGCTGGCT
CACCTGGTGACGTCACTCTAACTGGTCATTCAAGCTGGCATTTACATACA
GTCGAACCTCGGTTACGGACACACATGATTTTTCGTCGAAAAAAATGTCA
TTTAACCCTTTTAGCACTTGAAGCCCGTTTGGAGAAAAACTTGGTGACAC
CTAAAATTTGCCCACTGTTCTCGACCTAGACTTGCAATGGTAGTCTTTGG
AACCCGTAAAACGGCCTGGGGGCACCCCGCCGAGGGGTATGGACACTATA
CCTGCCCTACTTGCCCTGCACACAGCTCCGCAGCAGTGCTGAAGACACAA
CTGAGTTGTTGCGGATAAATATCTCAAAAATCTCGGGAAACAAAATCGCC
GCGATTCGTACTTTCCGCGGCGCCCCCGGCGGTTCAGCCGTTTGAGCCGC
ACAGCACACGCACCGCTTTGCTGTCACTCTTGAGAATCGCCGTCTGCTGG
GTTTAGAGCGGGTTGCACCGCCCGCCACGCTCTGTTGTGTGTTGTGAGGG
CTGCTTCGTGTGTTTTCACACGCACAGCTCAGGGTTCACGTCATGTGTCT
ACAGCAGAGAGTTTCTGTATTTCTAGTACGCTAATACAGTTTGTACTGCG
TTTCCGTATACTTTTTTTCTCCAAACGGTTTGGACAATTCGACTTGCGTT
TTAAATATAATTTTTCTCCAAATGATGTCGGGGCTCCGCAGCTGCAAAAT
GGAGAGACTACTGTTGTTTCTCGCCAATCAGTGGGTACCCAGAAGGTGCG
ATAAATTTTCGGCGATACTTTTTGTTTTCAGAGGGCTGGCGTACTAAAAG
GGTTAAGCCGGGGAAGTGTCCTTAAGATCCAGGGGACCATAACTCACCAT
CCCCGGGGTCAATAGAGGCGTTTAATACGTCAAAAGATGCGCCTTGGGCA
CGGGCATTCGTACTGTAGCACGAAAGGAGGCAGAAAAAATGGTGGGTAAA
TCATTTTTTGTTGCTTATTACACCATACAATACTAAAACCAAGATGTTAT
GTTAGAACGCTTGAGCCTACGTGTATACTGTTGCAGAGAACCCTTATCAA
CTTATCAACCGCACACTAAAACTACTCCTGTTCGGCAGTCTCATATATTG
AGGCGTAGTCCAGACGCAGGCCACCCCCAAACACGGCGCATGAAAAGAAA
TTGCACATCGAGCGATGTGCCCTTGGAAGGGTCTCGTCGAGATCTTTCCA
AATTGAACACGTTCGTCAATCGTACCCTCCCCCGCAGAATGTAAGATACA
CTCCACGGACTTCACTCCACAGCAAAAAAGGCGTACACTCGTAGCCAGCA
GAGAGGCCTCTGCTGATACACCTACCGGTGCGTCGTCTGCACTTGACGAA
AAACGATGCGAGGAACCTACGTGCGACAACAGCAACCCACCCATTGCGGG
AAAAATCGGCTTTGAAAATTGTTTACACCCCGGGGCATTCTCAAGGGGTA
CGGCGGTATGTACCTGATTGACGGTTCAGTGGTTCAGAAAAAGCCTGCCA
CGCTAGATTCTAGATTAAGACTACCGGTATATCTATGAACCCTAGCTTGT
ACCTTGAAGCCTTAAATCTTCTGTAGAAGCAAAGTCGTGAGTTCGAAATA
TCTCTTGAGTCAAAAAGTCCACGCAAAGTTGGAAAACGGTTCGGACGCGA
GCTCCTCGCTTCAAATAGTAAAGGCAAGCAACGCAAGAGGAAGGTGGGGG
GGGGGGGTGGGGGGAGATACCCCTGTGGTTTTCTCCCCTCCTGTGTTACC
CGGGCTGATGCACCAAACATATGCTGTGCCGAGAGGTTCAGCCTGGTGGC
AGAAATTATTAGATGAACGACGCACAGTCAAAGATAGGCACCACGGCTTG
GGTTCTGTTCGGCGTAACTCCAAGGAGCAGCAAGCAAACGATTCAGACCC
GGCACGCTCCCGCCTTCCGTGCTCGCTCTATGCTGGCTGCTCGCCTGTTA
CCTATTCCCGTGTGTTGTATTTATTTGATCATGAACAGAGACGTCGACAT
CATGAGTGGGAATGTGCCTGGTGGGCGGACCAGCGACAGCAACAACAACA
GCAGAGATAACAAGAGTCGAGGCTCAACAAATCAGTCAGATTCCGCCATG
GAATCGGACGGAGAAAAGGATGGCGGCGGTGATGAGGCGGATCTGCTCGC
CCTCCTCAGGCGCCTCGGCCTGGCGCGGTCGAGCTCCTCAAAGGGCGGTA
ACGGCGGCGGCGGTGGCGGCGGAACGGGTGGAAAGAACGGCGGCAGAAGC
GGCGGTGGCGGGAACATCCCGCGAAGGGAGAACAAGTGGACGCCGGCCCC
CGCGCCGGCGACTAGACCACCCCAATCGCCGCACGGGCATCTCGGCGTCA
ATAGCAGCTCCGGCGCCCCAGGGAGTGCCGGCATCAAGACGGCCGGCCGC
CATAGCAGCAGCGCCGCCCACAACCACAACGGCCACGAGAGATCCCAGAG
TGACGACGGGGTCTCTGCCGGCGGCCGGTACCCCCACCGCAGCGGCGGCG
GCATCGGTAGCTGCGGCGGCGGCGACGACGACGACGACCGGGCGCGGCGG
CTGCACGCCGGCTCGCACGGAGCGCCGCCGGCACCCCCCGCAGGCGGTGA
CGCTGGCGGAAGGGCCGGATCGGGAGCACCGGCGCCGGCGCCCGCCGGGA
GAACGGCAGGGGCGGCGAAGACGGTGGCGTCGCTGCCGGCGGCGGCGGCG
GCGGCTGGAGGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig10062:870..5081+

>mRNA_L-elsbetiae_contig10062.107.1 ID=mRNA_L-elsbetiae_contig10062.107.1|Name=mRNA_L-elsbetiae_contig10062.107.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1530bp|location=Sequence derived from alignment at L-elsbetiae_contig10062:870..5081+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGTCAGCATTTGCTCCCTCTCGGCATCGCTAATAACAGATGCGTCAG
CATTTGCTCCCTCTCGGCATCGCTAATAACAGAGACGTCGACATCATGAG
TGGGAATGTGCCTGGTGGGCGGACCAGCGACAGCAACAACAACAGCAGAG
ATAACAAGAGTCGAGGCTCAACAAATCAGTCAGATTCCGCCATGGAATCG
GACGGAGAAAAGGATGGCGGCGGTGATGAGGCGGATCTGCTCGCCCTCCT
CAGGCGCCTCGGCCTGGCGCGGTCGAGCTCCTCAAAGGGCGGTAACGGCG
GCGGCGGTGGCGGCGGAACGGGTGGAAAGAACGGCGGCAGAAGCGGCGGT
GGCGGGAACATCCCGCGAAGGGAGAACAAGTGGACGCCGGCCCCCGCGCC
GGCGACTAGACCACCCCAATCGCCGCACGGGCATCTCGGCGTCAATAGCA
GCTCCGGCGCCCCAGGGAGTGCCGGCATCAAGACGGCCGGCCGCCATAGC
AGCAGCGCCGCCCACAACCACAACGGCCACGAGAGATCCCAGAGTGACGA
CGGGGTCTCTGCCGGCGGCCGGTACCCCCACCGCAGCGGCGGCGGCATCG
GTAGCTGCGGCGGCGGCGACGACGACGACGACCGGGCGCGGCGGCTGCAC
GCCGGCTCGCACGGAGCGCCGCCGGCACCCCCCGCAGGCGGTGACGCTGG
CGGAAGGGCCGGATCGGGAGCACCGGCGCCGGCGCCCGCCGGGAGAACGG
CAGGGGCGGCGAAGACGGTGGCGTCGCTGCCGGCGGCGGCGGCGGCGGCT
GGAGGAAGACGTCGACATCATGAGTGGGAATGTGCCTGGTGGGCGGACCA
GCGACAGCAACAACAACAGCAGAGATAACAAGAGTCGAGGCTCAACAAAT
CAGTCAGATTCCGCCATGGAATCGGACGGAGAAAAGGATGGCGGCGGTGA
TGAGGCGGATCTGCTCGCCCTCCTCAGGCGCCTCGGCCTGGCGCGGTCGA
GCTCCTCAAAGGGCGGTAACGGCGGCGGCGGTGGCGGCGGAACGGGTGGA
AAGAACGGCGGCAGAAGCGGCGGTGGCGGGAACATCCCGCGAAGGGAGAA
CAAGTGGACGCCGGCCCCCGCGCCGGCGACTAGACCACCCCAATCGCCGC
ACGGGCATCTCGGCGTCAATAGCAGCTCCGGCGCCCCAGGGAGTGCCGGC
ATCAAGACGGCCGGCCGCCATAGCAGCAGCGCCGCCCACAACCACAACGG
CCACGAGAGATCCCAGAGTGACGACGGGGTCTCTGCCGGCGGCCGGTACC
CCCACCGCAGCGGCGGCGGCATCGGTAGCTGCGGCGGCGGCGACGACGAC
GACGACCGGGCGCGGCGGCTGCACGCCGGCTCGCACGGAGCGCCGCCGGC
ACCCCCCGCAGGCGGTGACGCTGGCGGAAGGGCCGGATCGGGAGCACCGG
CGCCGGCGCCCGCCGGGAGAACGGCAGGGGCGGCGAAGACGGTGGCGTCG
CTGCCGGCGGCGGCGGCGGCGGCTGGAGGA
back to top