mRNA_L-elsbetiae_contig1006.105.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1006.105.1 vs. uniprot
Match: D7FTU6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTU6_ECTSI) HSP 1 Score: 109 bits (272), Expect = 4.670e-24 Identity = 54/85 (63.53%), Postives = 58/85 (68.24%), Query Frame = 1 Query: 223 IGGDEPLDRDEDGEADPVCDCELTDAQEEALANYDNGGKIVVCDPTCLDSDVDQLHCNYFGLGQICRGCGTCSDCRPCPGTTPTP 477 +G D +D DE VC LTD Q LA+YDNGGK VVCDP+CLD D LHCNYFGLGQICRGCG CS C PCPG TP P Sbjct: 1303 LGADGAVDDDECS----VC-SNLTDEQVAVLASYDNGGKQVVCDPSCLDGVTDPLHCNYFGLGQICRGCGECSLCEPCPGATPAP 1382
BLAST of mRNA_L-elsbetiae_contig1006.105.1 vs. uniprot
Match: A0A6H5KTW1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTW1_9PHAE) HSP 1 Score: 97.8 bits (242), Expect = 1.390e-20 Identity = 40/58 (68.97%), Postives = 49/58 (84.48%), Query Frame = 1 Query: 286 ELTDAQEEALANYDNGGKIVVCDPTCLDSDVDQLHCNYFGLGQICRGCGTCSDCRPCP 459 +++ AQEEALA YD GGK++VCDPTCL D+ HCNYFGLGQ+CRGCG+CS+C PCP Sbjct: 322 DISPAQEEALAMYDGGGKVIVCDPTCLGGDIS--HCNYFGLGQLCRGCGSCSECVPCP 377
BLAST of mRNA_L-elsbetiae_contig1006.105.1 vs. uniprot
Match: D7G4W7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4W7_ECTSI) HSP 1 Score: 97.4 bits (241), Expect = 2.650e-20 Identity = 42/66 (63.64%), Postives = 51/66 (77.27%), Query Frame = 1 Query: 262 EADPVCDCELTDAQEEALANYDNGGKIVVCDPTCLDSDVDQLHCNYFGLGQICRGCGTCSDCRPCP 459 EA+ +++ AQEEALA YD GGK++VCDPTCL D+ HCNYFGLGQ+CRGCG+CS C PCP Sbjct: 349 EAEIAMCADISPAQEEALAMYDGGGKVIVCDPTCLGEDIS--HCNYFGLGQLCRGCGSCSGCDPCP 412
BLAST of mRNA_L-elsbetiae_contig1006.105.1 vs. uniprot
Match: A0A6H5L1V0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1V0_9PHAE) HSP 1 Score: 92.4 bits (228), Expect = 4.340e-19 Identity = 47/73 (64.38%), Postives = 50/73 (68.49%), Query Frame = 1 Query: 223 IGGDEPLDRDEDGEADPVCDCELTDAQEEALANYDNGGKIVVCDPTCLDSDVDQLHCNYFGLGQICRGCGTCS 441 +G D +D DE VC LTD Q LA+YDNGGK VVCDPTCLD D LHCNYFGLGQICRGCG CS Sbjct: 4 LGADGAVDDDECS----VC-SNLTDEQVAILASYDNGGKQVVCDPTCLDGVTDPLHCNYFGLGQICRGCGDCS 71
BLAST of mRNA_L-elsbetiae_contig1006.105.1 vs. uniprot
Match: A0A6H5L314_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L314_9PHAE) HSP 1 Score: 92.4 bits (228), Expect = 2.710e-18 Identity = 47/73 (64.38%), Postives = 50/73 (68.49%), Query Frame = 1 Query: 223 IGGDEPLDRDEDGEADPVCDCELTDAQEEALANYDNGGKIVVCDPTCLDSDVDQLHCNYFGLGQICRGCGTCS 441 +G D +D DE VC LTD Q LA+YDNGGK VVCDPTCLD D LHCNYFGLGQICRGCG CS Sbjct: 420 LGADGAVDDDECS----VC-SNLTDEQVAILASYDNGGKQVVCDPTCLDGVTDPLHCNYFGLGQICRGCGDCS 487
BLAST of mRNA_L-elsbetiae_contig1006.105.1 vs. uniprot
Match: D8LI25_ECTSI (Mucin 17-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI25_ECTSI) HSP 1 Score: 73.2 bits (178), Expect = 1.510e-11 Identity = 43/86 (50.00%), Postives = 49/86 (56.98%), Query Frame = 1 Query: 220 DIGGDEPLDRDEDGE---ADPVCDC----ELTDAQEEALANYDNGGKIVVCDPTCLDSDVDQLHCNYFGLGQICRGCGTCSDCRPC 456 D G D +D D G+ AD DC L++ Q ALA + G K VVCD CLD VD L C+YFGLGQICRGCG C C C Sbjct: 1156 DAGVDVEVDMDAYGDGADADTTSDCAACSNLSEVQMLALAAHPGGAKRVVCDSDCLDG-VDVLDCDYFGLGQICRGCGDCDGCEAC 1240 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1006.105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1006.105.1 >prot_L-elsbetiae_contig1006.105.1 ID=prot_L-elsbetiae_contig1006.105.1|Name=mRNA_L-elsbetiae_contig1006.105.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=203bp VTPVTPAPVTPETPAPTTAVTPAPVTPGPVTPVTPAPVTPKTPAPTTAVNback to top mRNA from alignment at L-elsbetiae_contig1006:13602..15448- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1006.105.1 ID=mRNA_L-elsbetiae_contig1006.105.1|Name=mRNA_L-elsbetiae_contig1006.105.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1847bp|location=Sequence derived from alignment at L-elsbetiae_contig1006:13602..15448- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1006:13602..15448- >mRNA_L-elsbetiae_contig1006.105.1 ID=mRNA_L-elsbetiae_contig1006.105.1|Name=mRNA_L-elsbetiae_contig1006.105.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1218bp|location=Sequence derived from alignment at L-elsbetiae_contig1006:13602..15448- (Laminarionema elsbetiae ELsaHSoW15)back to top |