mRNA_L-elsbetiae_contig10056.102.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10056.102.1
Unique NamemRNA_L-elsbetiae_contig10056.102.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig10056.102.1 vs. uniprot
Match: A0A6H5KJA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJA9_9PHAE)

HSP 1 Score: 178 bits (451), Expect = 4.980e-45
Identity = 127/243 (52.26%), Postives = 157/243 (64.61%), Query Frame = 2
Query:  605 EVVNEMIRQVGIEGCGGASDGVNALASAASHNHVDVLAILTDAGVVDTGEALVLAAGLGSEASVKILLQXXXXXXGGIYSGGNGYVNVAGYMGQTPVLGSIMNCRSHAPRVVRLLVDAGADTTSAVPLTPYPGGEVQWSFTPLTLTSGYLVSKT--VGSKDATEQQLNTLKAVRRLLLQVEAVHAVSWLWHSLVPSLISRAALEGTKRTTP-TTSLTLMMPILRTARRG--VLLAALYRQSSK 1318
            EVVNE+IRQVGI+GCGG+S GV AL  AA   +++++ ILT+AGVVDTG ALV+AAG G E  +K LL+               YVN     G TP+L  I + R   PRVVRLLV+AGADTTS V +    GG+   S TPL LT   +  K   VG   A+ +QL+ L+A+RRLLL+VEAVHAVSWLW S + S I+RAA  GT RTT  +T++TL M + R   RG  V LAAL R SSK
Sbjct:  200 EVVNELIRQVGIDGCGGSSGGVRALQQAAQFKNLNIMVILTNAGVVDTGLALVVAAGYGGETPLKFLLEQARARK---TMDEAAYVNTRDRGGVTPLLWGIQHYR---PRVVRLLVEAGADTTSPVAVRNQLGGD-DVSITPLGLTMNPVRDKVKVVGRGPASPEQLHKLEAIRRLLLRVEAVHAVSWLWPSDI-STITRAAARGTDRTTAISTAVTLPMLVTRRRARGRKVPLAALLRYSSK 434          
BLAST of mRNA_L-elsbetiae_contig10056.102.1 vs. uniprot
Match: A0A6H5KQV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQV0_9PHAE)

HSP 1 Score: 176 bits (447), Expect = 2.480e-44
Identity = 123/243 (50.62%), Postives = 155/243 (63.79%), Query Frame = 2
Query:  605 EVVNEMIRQVGIEGCGGASDGVNALASAASHNHVDVLAILTDAGVVDTGEALVLAAGLGSEASVKILLQXXXXXXGGIYSGGNGYVNVAGYMGQTPVLGSIMNCRSHAPRVVRLLVDAGADTTSAVPLTPYPGGEVQWSFTPLTLTSGYLVSKTVGSKDATEQQLNTLKAVRRLLLQVEAVHAVSWLWHSLVPSLISRAALEGTKRTTPT----TSLTLMMPILRTARRGVLLAALYRQSSKM 1321
            EVVNE+IRQVGI+GCGG+S G NAL  AA  + +D++AILTDAGVVDTG ALV+AAG G EA +K LL+      G   +    Y+N    +G T +L  I  CR   PRVV+LLV+AGADTTS V +   PG E  +  TPL LT   L  ++  +K  T ++ N L+ +RRLLL+ EAVHAVSWLW S  P+ I+ A  +GT RTT T    T   ++M   RT  R  LLAAL R SSK+
Sbjct:  200 EVVNELIRQVGIDGCGGSSGGENALRQAALFSRLDIMAILTDAGVVDTGLALVVAAGYGGEAPLKFLLEQAR---GRKSTDRAAYMNTLNGVGLTSLLDGIQRCR---PRVVQLLVEAGADTTSPVLICNQPG-EDDFHITPLGLTMCLLGGRS--AKPLTMEEQNKLEVIRRLLLREEAVHAVSWLWPSDTPT-ITHATAKGTGRTTATSTAATPFIMLMIGRRTRGRKGLLAALLRYSSKL 432          
BLAST of mRNA_L-elsbetiae_contig10056.102.1 vs. uniprot
Match: D7FT11_ECTSI (EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT11_ECTSI)

HSP 1 Score: 178 bits (451), Expect = 3.060e-44
Identity = 122/241 (50.62%), Postives = 153/241 (63.49%), Query Frame = 2
Query:  605 EVVNEMIRQVGIEGCGGASDGVNALASAASHNHVDVLAILTDAGVVDTGEALVLAAGLGSEASVKILLQXXXXXXGGIYSGGNGYVNVAGYMGQTPVLGSIMNCRSHAPRVVRLLVDAGADTTSAVPLTPYPGGEVQWSFTPLTLTSGYLVSKTVGS-KDATEQQLNTLKAVRRLLLQVEAVHAVSWLWHSLVPSLISRAALEGTKRTTPTTSLTLMMPIL--RTARRGVLLAALYRQSSK 1318
            +VV E+I+++GIEGC   S G +ALA AAS+ H+D++AILT+AGVVDTG+AL LAAG+G EASVK LL+      G    G   Y+N     G TP++     C S APR+VR+LVDAGADTTS V +    GG V ++ TPL  T   L  K V   K AT++ L  L+A+ RLLL+V+AVHAVSWLW S  P  I RA    T    P  +L LM+PIL  RT RR  L+A L R S K
Sbjct:  292 DVVRELIQELGIEGCDATSAGAHALAFAASNQHLDIMAILTEAGVVDTGKALYLAAGMGHEASVKFLLRHRHKEGGCGVEGA--YLNARDVNGYTPLVVCTQGCFSQAPRIVRMLVDAGADTTSPVQVMNLKGGVV-FNDTPLAFTKLRLRKKIVADGKPATKEHLQRLEAICRLLLRVDAVHAVSWLWPSGAP-FIGRAT--ETDPEPPLPALKLMLPILKRRTKRRCGLVATLLRYSVK 526          
BLAST of mRNA_L-elsbetiae_contig10056.102.1 vs. uniprot
Match: D7G1U9_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1U9_ECTSI)

HSP 1 Score: 164 bits (415), Expect = 3.700e-40
Identity = 114/246 (46.34%), Postives = 148/246 (60.16%), Query Frame = 2
Query:  605 EVVNEMIRQVGIEGCGGASDGVNALASAASHNHVDVLAILTDAGVVDTGEALVLAAGLGSEASVKILLQXXXXXXGGIYSGGNGYVN-VAGYMGQTPVLGSIMNCRSHAPRVVRLLVDAGADTTSAVPLTPYPGGEVQWSF-TPLTLTSGYLVSKTVGSKDATEQQLNTLKAVRRLLLQVEAVHAVSWLWHSLVPSLISRAALEGTKRTTPTTS---LTLMMPILRTA--RRGVLLAALYRQSSKM 1321
            EVV E+I+Q+G+ GCGG S GV +L  AA+  +VD++ ILT  GVVDTG ALV+AA    E SVK LLQ           GG  YVN      G+TP++ +I  C S +PR+ R L+D GADT S V +T    GE   S  TPL   +  L    VG K+ATE+QL +LKA+ RLL Q+EAVHAVSWLW S   + I  A    + R  PTT+   L  M  +LRT   +RGV+L A+YR + ++
Sbjct:  194 EVVRELIQQLGVRGCGGVSAGVESLRLAATEQYVDIMGILTVGGVVDTGRALVVAAEYSREESVKFLLQHQA-------GGGTWYVNNTLDPFGRTPLVCTIEACGSSSPRIARFLIDDGADTKSTVLVTR--SGEWTTSRDTPLGFATRSLRQNKVGGKNATEEQLRSLKAIHRLLSQIEAVHAVSWLWRSS-DTPIGHAVGAASSRMKPTTAGPTLKRMSTVLRTTVGKRGVVLRAVYRAAEEL 429          
BLAST of mRNA_L-elsbetiae_contig10056.102.1 vs. uniprot
Match: D8LJF9_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJF9_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 1.630e-35
Identity = 118/249 (47.39%), Postives = 143/249 (57.43%), Query Frame = 2
Query:  599 SLEVVNEMIRQVGIEGCGGASDGVNALASAASHNHVDVLAILTDAGVVDTGEALVLAAGLGSEASVKILLQXXXXXXGGIYSGGNGYVNVAGYMGQTPVLGSIMNC----RSHAPRVVRLLVDAGADTTSAVPLTPYPGGEVQWSFTPLTLTSGYLVSKTVGSKDATEQQLNTLKAVRRLLLQVEAVHAVSWLWHSLVPSLISR---AALEGTKRTTPTTSLTLMMPILRT-ARR-GVLLAALYRQSSK 1318
            +L V+ E+I++VGIEGCGG S G  AL  A     V  +A+LT AGVVDTG+AL ++AGLG EASVK LLQ         + G   YVNV    G TP+L SI  C    +S  PRV RLLV+AGADTT+ +  T   G  V +S TPL LT   L  K V     ++Q+L  L+ +RRLLLQVEAVHA SWLW S       R   AA   T        L  ++PILR  ARR GV+  AL R   K
Sbjct:  181 NLLVMRELIQRVGIEGCGGQSRGEVALLMAGEGRRVAAMALLTHAGVVDTGQALTISAGLGREASVKYLLQNHAK-----HYGPGAYVNVRDRNGTTPLLSSIYVCGVDEQSSFPRVARLLVEAGADTTTELRRTNSMG-VVLFSCTPLKLTVHILQDKKVDGTYISKQRLWRLEGIRRLLLQVEAVHAESWLWPSSSGDGGRRPDNAAEVTTATNAAAPKLGRVLPILRRRARRPGVVWTALCRHQRK 423          
BLAST of mRNA_L-elsbetiae_contig10056.102.1 vs. uniprot
Match: D7G1H7_ECTSI (EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1H7_ECTSI)

HSP 1 Score: 148 bits (373), Expect = 1.250e-34
Identity = 112/248 (45.16%), Postives = 143/248 (57.66%), Query Frame = 2
Query:  605 EVVNEMIRQVGIEGCGGASDGVNALASAASHNHVDVLAILTDAG-VVDTGEALVLAAGLGSEASVKILLQXXXXXXGGIYSGGNGYVN-VAGYMGQTPVLGSIM--NCRSHAPRVVRLLVDAGADTTSAVPLTPYPGGEVQWSFTPLTLTSGYLVSKTVGSKDATEQQLNTLKAVRRLLLQVEAVHAVSWLWHSLVPSLISRAALEGTKRTTPT---TSLTLMMPILRT--ARRGVLLAALYRQSSKM 1321
            +V  EMIRQVGI GCGG S GV AL  AA   H++ +A+L DAG VVDTG AL+LAA  G   +VK LL+          +  + YVN      G+TPV+ ++     R  +P++VRLLVDAGA+TT AV +T       + S TPL  T+  L    V  + AT++QL  LK  R LL + EAVHAVSWLW S  P  I++AA +    T  T   T L  M P+LR     RGVLL  L+R S K+
Sbjct:  196 DVAREMIRQVGIRGCGGPSGGVEALRQAADEEHLEFMAVLLDAGGVVDTGPALILAAENGRAVAVKFLLRRRQ-------ADADAYVNGTRDPYGRTPVMCAVDVGAGRLCSPKIVRLLVDAGANTTRAVGVTRITPRWEKTSETPLAFTTRLLREGRVDGEAATKEQLQRLKDTRCLLSRAEAVHAVSWLWASGEPPRIAQAAGDTKTETASTAVATPLRAMSPMLRRKPGTRGVLLKTLFRYSRKV 436          
BLAST of mRNA_L-elsbetiae_contig10056.102.1 vs. uniprot
Match: A0A6H5K037_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K037_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 1.550e-34
Identity = 110/244 (45.08%), Postives = 140/244 (57.38%), Query Frame = 2
Query:  605 EVVNEMIRQVGIEGCGGASDGVNALASAASHNHVDVLAILTDAGVVDTGEALVLAAGLGSEASVKILLQXXXXXXGGIYSGGNGYVN-VAGYMGQTPVLGSIMNCRSHAPRVVRLLVDAGADTTSAVPLTPYPGGEVQWSF---TPLTLTSGYLVSKTVGSKDATEQQLNTLKAVRRLLLQVEAVHAVSWLWHSLVPSLISRAALEGTKRTTPTTS---LTLMMPILRTA--RRGVL-LAALYR 1306
            EVV E+  Q+G+ GCGG S GV +L  A +   VD++ ILT  GVVDTG ALV+AA    E SVK LLQ           GG  YVN      G+TP++ +I  C S +PR+ R L+DA ADT S V +T       QW+    TPL   +  L    VG K+ATE+QL +LKA+ RLL QV+AVHAVSWLW S   +  S A    + R  PT +   L  M  +LRT   +RGV+ L A+YR
Sbjct:  184 EVVRELTHQLGVRGCGGVSGGVESLRLATTEQDVDIMGILTVGGVVDTGRALVVAAENSREESVKFLLQHQA-------GGGAWYVNNTLDPFGRTPLVCTIEACGSSSPRIARFLIDAEADTKSTVLVTK----SGQWTTSRDTPLGFATHSLRQNKVGRKNATEEQLRSLKAIHRLLSQVDAVHAVSWLWRSS-DTRNSYAVGAASSRMKPTIAGPLLKRMPTVLRTTVGKRGVVVLRAVYR 415          
BLAST of mRNA_L-elsbetiae_contig10056.102.1 vs. uniprot
Match: D7FXY7_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXY7_ECTSI)

HSP 1 Score: 144 bits (364), Expect = 2.250e-34
Identity = 113/253 (44.66%), Postives = 142/253 (56.13%), Query Frame = 2
Query:  602 LEVVNEMIRQVGIEGCGGASDGVNALASAASHNHVDVLAILTDAGVVDTGEALVLAAGLGSEASVKILLQXXXXXXGGIYSGGNGYVNVAGYMGQTPVLGSIMNCRSHA---------PRVVRLLVDAGADTTSAVPLTPYPGGEVQWSFTPLTLTSGYLVSKTVGSKDATEQQLNTLKAVRRLLLQVEAVHAVSWLWHSLVPSLISRAALEGTKRTTP--TTSLTLMMPILRTAR---RGVLLAALYRQSSK 1318
            LEVVNE+IRQVGI GCGG+S GV AL  AA + H+D+L +LT+AGVVDTG A            V +               G G  N     G T V      CR  A         PRVVRLLV+AGADTTS VP+   PG +   + TP+ LT   L+   +G++  TE+QLN L+A+ RLLL+VEA+HAVSWLW S + +     A +GT RTT   T    L++ + + AR   R V LAAL R SSK
Sbjct:  101 LEVVNELIRQVGIGGCGGSSGGVRALQQAARNKHLDMLTVLTNAGVVDTGLARGRRIWRRGPLEVSV-------------GAGKGEEN----HGWTCVCEHPQRCRFDAIACWHQRCRPRVVRLLVEAGADTTSTVPIDGLPGTD---NITPMGLTM--LLLHDLGTEPLTEEQLNALEAIHRLLLRVEALHAVSWLWSSDICNCTYSTA-QGTDRTTSKSTAGTPLVLTMRQRARSKEREVPLAALLRYSSK 330          
BLAST of mRNA_L-elsbetiae_contig10056.102.1 vs. uniprot
Match: D7FYA6_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYA6_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 2.450e-33
Identity = 107/240 (44.58%), Postives = 138/240 (57.50%), Query Frame = 2
Query:  608 VVNEMIRQVGIEGCGGASDGVNALASAASHNHVDVLAILTDAGVVDTGEALVLAAGLGSEASVKILLQXXXXXXGGIYSGGNGYVNVAGYMGQTPVLGSIMNCR-SHAPRVVRLLVDAGADTTSAVPLTPYPGGEVQWSFTPLTLTSGYLVSKTVGSKDATEQQLNTLKAVRRLLLQVEAVHAVSWLWHSLVPSLISRAALEGTKR------TTPTTSLTLMMPILRTARRGVLLAALYR 1306
            VV ++I+Q+GI+GCGGAS G +AL  A      D++ +L DAGV+DTG  L+ A   GSEASVKILLQ         +   N YVN     G+TPV+ SI     S +PRV+RL +DAGADT S V +    G EV +S TPL  T+  L  +   + D+T+ Q   LKAV R+LLQ+EA+ AVSW W S   S I RA ++GT R      T P   LTL     R     VL+ A+ R
Sbjct:  333 VVRKLIQQLGIQGCGGASAGADALRRAVRTQQYDIVVMLADAGVIDTGRVLIDATKFGSEASVKILLQQQRWK----HMDWNTYVNKKHPDGRTPVVCSIGRALLSGSPRVLRLFLDAGADTASTVRIANKEGVEV-FSGTPLAYTTWLLRDQQAQAIDSTKGQPCGLKAVCRMLLQLEAIRAVSWCWQSDASSPIERAVMDGTPRAKSKLTTDPPLGLTLPRTRRRARAHRVLVMAISR 567          
BLAST of mRNA_L-elsbetiae_contig10056.102.1 vs. uniprot
Match: D8LSC5_ECTSI (EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC5_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 1.060e-32
Identity = 97/209 (46.41%), Postives = 126/209 (60.29%), Query Frame = 2
Query:  695 HNHVDVLAILTDAGVVDT-GEALVLAAGLGSEASVKILL-QXXXXXXGGIYSGGNGYVNVAGYMGQTPVLGSIMNCRSHAPRVVRLLVDAGADTTSAVPLTPYPGGEVQWSFTPLTLTSGYLVSKTVGSKDATEQQLNTLKAVRRLLLQVEAVHAVSWLWHSLVPSLISRAALE-GTKRTTPTTSLTLMMPILRTARRGVLLAALYRQS 1312
            + H+D++AILT AGV D  G  L+  AGLG EASV+ LL Q        +++    Y N +   G TP+  SI  C S  PR+VRLLVDAGADTTS V +T   GG V+++ TPL +T+  L  K V  K ATE+QL+ L+A+RRLLL+V+AVHAVSWLW S  PS++       G +   P  SLTL +   R     V +A L R S
Sbjct:    2 NQHMDIMAILTGAGVRDAMGYVLLGTAGLGREASVQFLLRQRRKESEMSVHA----YANSSDGSGMTPLSCSIEWCSSGNPRIVRLLVDAGADTTSTVRVTNLNGG-VEYNDTPLAVTTSLLREKVVDGKPATEEQLHRLQAIRRLLLRVDAVHAVSWLWPSDAPSIVHAVERSCGPEPRRPPLSLTLPILKRRAKTCHVFVATLLRSS 205          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10056.102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJA9_9PHAE4.980e-4552.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQV0_9PHAE2.480e-4450.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FT11_ECTSI3.060e-4450.62EsV-1-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D7G1U9_ECTSI3.700e-4046.34EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LJF9_ECTSI1.630e-3547.39EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7G1H7_ECTSI1.250e-3445.16EsV-1-199 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G1... [more]
A0A6H5K037_9PHAE1.550e-3445.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXY7_ECTSI2.250e-3444.66EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FYA6_ECTSI2.450e-3344.58Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
D8LSC5_ECTSI1.060e-3246.41EsV-1-199 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10056contigL-elsbetiae_contig10056:1478..4750 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score173.3
Seed ortholog evalue1.3e-40
Seed eggNOG ortholog2880.D7FT11
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size2501
Cds size705
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10056.102.1prot_L-elsbetiae_contig10056.102.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10056 2655..4131 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815238.6066105-UTR-L-elsbetiae_contig10056:1477..26541622815238.6066105-UTR-L-elsbetiae_contig10056:1477..2654Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10056 1478..2654 -
1691682789.038364-UTR-L-elsbetiae_contig10056:1477..26541691682789.038364-UTR-L-elsbetiae_contig10056:1477..2654Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10056 1478..2654 -
1622815238.6360867-UTR-L-elsbetiae_contig10056:4131..47501622815238.6360867-UTR-L-elsbetiae_contig10056:4131..4750Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10056 4132..4750 -
1691682789.0698633-UTR-L-elsbetiae_contig10056:4131..47501691682789.0698633-UTR-L-elsbetiae_contig10056:4131..4750Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10056 4132..4750 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815238.616937-CDS-L-elsbetiae_contig10056:2654..26731622815238.616937-CDS-L-elsbetiae_contig10056:2654..2673Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10056 2655..2673 -
1691682789.048904-CDS-L-elsbetiae_contig10056:2654..26731691682789.048904-CDS-L-elsbetiae_contig10056:2654..2673Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10056 2655..2673 -
1622815238.626568-CDS-L-elsbetiae_contig10056:3445..41311622815238.626568-CDS-L-elsbetiae_contig10056:3445..4131Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10056 3446..4131 -
1691682789.059179-CDS-L-elsbetiae_contig10056:3445..41311691682789.059179-CDS-L-elsbetiae_contig10056:3445..4131Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10056 3446..4131 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10056.102.1

>prot_L-elsbetiae_contig10056.102.1 ID=prot_L-elsbetiae_contig10056.102.1|Name=mRNA_L-elsbetiae_contig10056.102.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=235bp
MIRQVGIEGCGGASDGVNALASAASHNHVDVLAILTDAGVVDTGEALVLA
AGLGSEASVKILLQQQQQQQGGIYSGGNGYVNVAGYMGQTPVLGSIMNCR
SHAPRVVRLLVDAGADTTSAVPLTPYPGGEVQWSFTPLTLTSGYLVSKTV
GSKDATEQQLNTLKAVRRLLLQVEAVHAVSWLWHSLVPSLISRAALEGTK
RTTPTTSLTLMMPILRTARRGVLLAALYRQSSKM*
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mRNA from alignment at L-elsbetiae_contig10056:1478..4750-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10056.102.1 ID=mRNA_L-elsbetiae_contig10056.102.1|Name=mRNA_L-elsbetiae_contig10056.102.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3273bp|location=Sequence derived from alignment at L-elsbetiae_contig10056:1478..4750- (Laminarionema elsbetiae ELsaHSoW15)
CGGATACGGCGAGACCGGCGGTGGCCTCGAGGACCCATGAGGGATCTACA CCTAGCCGCCTGCAATGGTTCCCTCCAGCGCGTGGTAGCCCTTCTTTCGC AGAAATCGATAGGCATCGACGAGGTCGACCCGGAGAGCTGGGCAACCCCT CTCATGGTGGCCGCCATGTACAACCACGCGCCCGTTGCCAGGGTCCTTAT CAGCAGGGGAGCCGACGTGTCGATAGTAAGTAGGAGCGATGCCACCGCTT TGCACGTGTCGACTGATGCCGGGCACGTCGGCGTCACAGAAATTTTGCTC AAGGCCGGGGCAGATATCGAAGGGTCTCCAGCTGAAGGTAGCACCCCGCT TTACCTCGCTGCACAAGGAGGGCACTGGGAGGTGATGGGAGTGCTGATCG AGGCAGGCGCGAATGTCGACACCCGCGGCTCGGATGGGGAACAGCGTACG CCGCTGTACATCGCAGCTGAGAAGGGATACGCCAACGCTGTGAGGGAGCT GCTCAAGGTAAAAGCGAACCCGTTGTAGGGTTGGACGGATCAGGAGTCAT GAAGAACTTGGCTTCCGTTGGACGCGGCGGCGCGATGTGGACACTTGGAG CTTGGAGGTGGTCAATGAGATGATACGGCAAGTGGGAATCGAGGGCTGTG GCGGTGCAAGCGACGGGGTAAATGCTCTCGCCAGTGCTGCGAGTCACAAT CATGTAGATGTCTTGGCCATCTTGACGGACGCCGGAGTGGTAGACACGGG TGAGGCCCTTGTCCTGGCCGCTGGGCTTGGCAGCGAGGCATCGGTGAAGA TTCTCTTGCAGCAGCAGCAGCAGCAGCAGGGGGGCATATATTCTGGTGGG AATGGTTATGTGAACGTCGCCGGTTATATGGGCCAAACGCCCGTCCTCGG TAGCATTATGAATTGCCGATCACATGCTCCCAGGGTGGTGCGGCTGCTCG TCGACGCCGGAGCCGACACGACATCAGCCGTCCCACTGACGCCATATCCT GGGGGTGAGGTCCAATGGAGTTTCACGCCGCTGACTCTCACAAGTGGTTA CCTCGTGAGCAAGACAGTTGGAAGTAAAGATGCCACAGAGCAACAGCTCA ACACGCTGAAGGCAGTCCGCCGCCTGCTTCTGCAAGTAGAGGCGGTGCAT GCTGTCTCTTGGCTATGGCACAGCCTGGTCCCATCACTCATCTCCCGTGC TGCATTAGAGGGGACAAAAAGGACGACGCCTACAACATCGCTGACGCTGA TGATGCCAATCTTGAGGACTGCAAGACGTGGTGTGCTCTTGGCGGCCTTG TACAGGTGTGTAATCGGCTGGTGTGGAGAGCAGTTCAAGCTATGTTGTGA TGGTGTCGTTCGATGAAAGCTTGTTGAGAGGTATCGTTCCAGTTGCCCTT GCTGCTGCTGCTACTGGTGTAGGTGTGGTGGCAGTGCTCAAAATTTGCTG TCGTCGTGTAGCAAAAGATTGTCTGATTTATATAGGCTGAGTTTTATTTT TTGTCGATCTGCTGCTGAAGTGTGCTACTGTTTGATTGCGCTGCTTGTTC AGCTGCAGCTGTGCTTGCCCACGCCAGTTTTTGTTGACCACGCATCATGT CTGTTTTGCGTTTATCGTCTTGATTGGCGGCACTAGAGCAAATGCCACTA ATTGGAGCAAATGCTGGTACTTCAAAACAGGATATTCAACACAGGTCCAC AAACATGCTCACTCATATCACCGCCGTCTAAAGACGTAGAAGTTGTGTTT GCTACGAGAGGGAAAGAAGGAGACACGTGGCAACACTCTCATTATCACCG CAGTCGTGTGATATGACTGGGGTTTGTCGCGAGCAAAATGTGAACAGTCT GCCGGAACACTTCAAAATACGTTTTTACTGCCGTTTGTCTTGTGCTGCCT GCGCCTTACTGGTATCGTACGAAATAATTCCAACGTGCTCCTGTCCTCGG TGATTGTAAAGGAATTGAAGGATCAACACCCCTCTAGCTTCTTTACGTTC GAGATTTCGCCGCGACTAATGACCGACCGCTCCTCGCGTGTTGCTCGTCG TCGTGCCCCACCCGCGTGCTCTAGCAGGCAGTCGTCAAAGATGTAGTCGA GTAGCTGTCGTAAAAACATCTACAGGTTGCGTTTGGAGCGCAGGTGCCGT CGACGTGGAGCTTCTGTGCCATGGACACTTTGGTTTTCTGCCCAGCGGGC GGCGTGCAGAAGCAGCATCGGCCTCGGAGCCTTGCGGGCGCACGGTTTGG CGTACGCCATCTCAGGCGAAAAGCTCTTGACCTGGAACGATTGAAAACGA GTATTGTGTCGAGGTCCTTGTAGATGAGGCGATGTTTACCTGGGCCGTTG GCAGCATTTGATACGCGTTGTGTGATAGGCTGGTTTGAGGAGGACGGTAG CAGCGAGGTGCTCGCGGTGTAAATAGTCGTGGAGGCAGAATGTGAGTTTA AATTTAGAGCCAGAGTTTTTAGAGCGCTCGATCCCCCCGGCAAAGCAACT CATGTCGTCGGCATTATGTTCACTTACACGAAGTTGATCTTCATGATCCC GCTACATGTGTATGATTATCTTCTCGCGTACTTTTGGTAATAAAGCCGGG CTTGGAGCCATTAAGGCCGGATAAATTCGGCCGTTGCGCTGGTTGGAAGA CTTCAGAAAACTGAAGGGTATTTGGTATTGTCGTCTATGACCTTGCTTCC GCAGGCTCGAGGTTGGTCGGTGATGACTCGGTAACACCGCGAGGTTTTAT TTTGCACCCGTTCTTGCCCGTCCCTCCTTTATGCTCTCAGTTTTTTTTGT CGGATGTTTAGTTGTTTGGTGAAAGAGGTGTTGCGTGCTCAGACCCTTGG TCGTCGTTCTTGTTGGAATGACGGGACCATCGCATTTTCGGATGTATGTG CGTAAACGCAATTCTATGCAAGATGGCGTCTTTCTGCTTCATAGGTAGGT GTAGGCACACGTGGGGAGCACCAATAATGTAAAATCTAGGGCAAATCGGC ACCGTCCGTCCATACGATAATCTAAATAATCACGCATTTTTTTGTGGAGA GGCCACACGTCACCCTGCCTAGGCGATGCGGTTGTGTGTGTGTGTGTGTG TGTGTTTGTGTGTGTCCTTCCCATTTATTTTGGCGATAGTCCCCCCAAGT GGAGACATGTACTACACCTTGCGGTGTACTTAGGAGGTACAACACTTTGC AGTGCATTTGTATGTACAACTAGAACCAACCGGGTGTGCCGCAGCTAATG CCAGACACTTGCTATTGTATCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10056:1478..4750-

>mRNA_L-elsbetiae_contig10056.102.1 ID=mRNA_L-elsbetiae_contig10056.102.1|Name=mRNA_L-elsbetiae_contig10056.102.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1410bp|location=Sequence derived from alignment at L-elsbetiae_contig10056:1478..4750- (Laminarionema elsbetiae ELsaHSoW15)
ATGATACGGCAAGTGGGAATCGAGGGCTGTGGCGGTGCAAGCGACGGGGT
AAATGCTCTCGCCAGTGCTGCGAGTCACAATCATGTAGATGTCTTGGCCA
TCTTGACGGACGCCGGAGTGGTAGACACGGGTGAGGCCCTTGTCCTGGCC
GCTGGGCTTGGCAGCGAGGCATCGGTGAAGATTCTCTTGCAGCAGCAGCA
GCAGCAGCAGGGGGGCATATATTCTGGTGGGAATGGTTATGTGAACGTCG
CCGGTTATATGGGCCAAACGCCCGTCCTCGGTAGCATTATGAATTGCCGA
TCACATGCTCCCAGGGTGGTGCGGCTGCTCGTCGACGCCGGAGCCGACAC
GACATCAGCCGTCCCACTGACGCCATATCCTGGGGGTGAGGTCCAATGGA
GTTTCACGCCGCTGACTCTCACAAGTGGTTACCTCGTGAGCAAGACAGTT
GGAAGTAAAGATGCCACAGAGCAACAGCTCAACACGCTGAAGGCAGTCCG
CCGCCTGCTTCTGCAAGTAGAGGCGGTGCATGCTGTCTCTTGGCTATGGC
ACAGCCTGGTCCCATCACTCATCTCCCGTGCTGCATTAGAGGGGACAAAA
AGGACGACGCCTACAACATCGCTGACGCTGATGATGCCAATCTTGAGGAC
TGCAAGACGTGGTGTGCTCTTGGCGGCCTTGTACAGATGATACGGCAAGT
GGGAATCGAGGGCTGTGGCGGTGCAAGCGACGGGGTAAATGCTCTCGCCA
GTGCTGCGAGTCACAATCATGTAGATGTCTTGGCCATCTTGACGGACGCC
GGAGTGGTAGACACGGGTGAGGCCCTTGTCCTGGCCGCTGGGCTTGGCAG
CGAGGCATCGGTGAAGATTCTCTTGCAGCAGCAGCAGCAGCAGCAGGGGG
GCATATATTCTGGTGGGAATGGTTATGTGAACGTCGCCGGTTATATGGGC
CAAACGCCCGTCCTCGGTAGCATTATGAATTGCCGATCACATGCTCCCAG
GGTGGTGCGGCTGCTCGTCGACGCCGGAGCCGACACGACATCAGCCGTCC
CACTGACGCCATATCCTGGGGGTGAGGTCCAATGGAGTTTCACGCCGCTG
ACTCTCACAAGTGGTTACCTCGTGAGCAAGACAGTTGGAAGTAAAGATGC
CACAGAGCAACAGCTCAACACGCTGAAGGCAGTCCGCCGCCTGCTTCTGC
AAGTAGAGGCGGTGCATGCTGTCTCTTGGCTATGGCACAGCCTGGTCCCA
TCACTCATCTCCCGTGCTGCATTAGAGGGGACAAAAAGGACGACGCCTAC
AACATCGCTGACGCTGATGATGCCAATCTTGAGGACTGCAAGACGTGGTG
TGCTCTTGGCGGCCTTGTACAGGCAGTCGTCAAAGATGTAGGCAGTCGTC
AAAGATGTAG
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