mRNA_L-elsbetiae_contig10055.101.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10055.101.1
Unique NamemRNA_L-elsbetiae_contig10055.101.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig10055.101.1 vs. uniprot
Match: D8LBK9_ECTSI (OmpA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK9_ECTSI)

HSP 1 Score: 139 bits (351), Expect = 3.260e-36
Identity = 68/98 (69.39%), Postives = 79/98 (80.61%), Query Frame = 1
Query:    1 DPQPLSHSWETDTSPPATTILSFPDKFTPSVVSFFFFFFAEGPLSRFMCRMDDGGQWRQCQETSEFPLSDGEHTLLVMAVDQTGRADPNPVAYSWEVN 294
            DPQPLSHSWETDTS P TTILSFPDK  PSV    F F +  PLSRFMC++D G  WRQC ETS+FPLSDG H+++VMAVD TGR+DPNP+ Y+WEV+
Sbjct:  571 DPQPLSHSWETDTSLPVTTILSFPDKLMPSV----FTFGSSKPLSRFMCKVDSG-LWRQCDETSQFPLSDGLHSVVVMAVDPTGRSDPNPITYNWEVS 663          
BLAST of mRNA_L-elsbetiae_contig10055.101.1 vs. uniprot
Match: A0A6H5K857_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K857_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 1.130e-35
Identity = 67/98 (68.37%), Postives = 78/98 (79.59%), Query Frame = 1
Query:    1 DPQPLSHSWETDTSPPATTILSFPDKFTPSVVSFFFFFFAEGPLSRFMCRMDDGGQWRQCQETSEFPLSDGEHTLLVMAVDQTGRADPNPVAYSWEVN 294
            DPQPLSHSWETDT  P TTILSFPDK  PSV    F F +  PLSRFMC++D G  WRQC ETS+FPLSDG H+++VMAVD TGR+DPNP+ Y+WEV+
Sbjct:  235 DPQPLSHSWETDTLLPVTTILSFPDKLMPSV----FTFGSSKPLSRFMCKVDSG-MWRQCDETSQFPLSDGLHSVVVMAVDPTGRSDPNPITYNWEVS 327          
BLAST of mRNA_L-elsbetiae_contig10055.101.1 vs. uniprot
Match: A0A7Y6X1J8_9DELT (OmpA family protein n=2 Tax=unclassified Myxococcus TaxID=2648731 RepID=A0A7Y6X1J8_9DELT)

HSP 1 Score: 73.2 bits (178), Expect = 7.360e-13
Identity = 42/99 (42.42%), Postives = 56/99 (56.57%), Query Frame = 1
Query:    1 DPQPLSHSWETDTSPPATTILSFPDKFTPSVVSFFFFFFAEGPLSRFMCRMDDGGQWRQCQETSEFP-LSDGEHTLLVMAVDQTGRADPNPVAYSWEVN 294
            DP P  ++W  DT+PP T ++S P   T S  S  F F A  P S + C +D G  +  C ET+ F   ++GEHTLLV AVD  G  DP P  ++W V+
Sbjct:  929 DPTPAQYAWTVDTTPPDTLVVSGPPTVT-SETSASFEFAASEPGSTYECSLD-GAAYVPCTETATFNGFAEGEHTLLVRAVDTAGNVDPTPAEHTWTVD 1025          
BLAST of mRNA_L-elsbetiae_contig10055.101.1 vs. uniprot
Match: A0A0H4X958_9DELT (Internalin, putative n=1 Tax=Myxococcus hansupus TaxID=1297742 RepID=A0A0H4X958_9DELT)

HSP 1 Score: 69.3 bits (168), Expect = 1.660e-11
Identity = 40/99 (40.40%), Postives = 55/99 (55.56%), Query Frame = 1
Query:    1 DPQPLSHSWETDTSPPATTILSFPDKFTPSVVSFFFFFFAEGPLSRFMCRMDDGGQWRQCQETSEFP-LSDGEHTLLVMAVDQTGRADPNPVAYSWEVN 294
            DP P  ++W  DT+PP T ++S P   T    + F F  +E P S + C +D G  +  C E   F   ++G+HTLLV AVD  G ADP P  Y+W V+
Sbjct: 1096 DPTPAEYTWTVDTAPPDTLVVSGPATPTSQSTASFEFESSE-PGSTYECSLD-GAAYVPCAEVVTFEGFAEGDHTLLVRAVDAAGNADPTPAEYTWTVD 1192          
BLAST of mRNA_L-elsbetiae_contig10055.101.1 vs. uniprot
Match: A0A4Y6CFA7_MYXXA (Cell envelope biogenesis protein OmpA n=19 Tax=Proteobacteria TaxID=1224 RepID=A0A4Y6CFA7_MYXXA)

HSP 1 Score: 69.3 bits (168), Expect = 1.660e-11
Identity = 41/99 (41.41%), Postives = 55/99 (55.56%), Query Frame = 1
Query:    1 DPQPLSHSWETDTSPPATTILSFPDKFTPSVVSFFFFFFAEGPLSRFMCRMDDGGQWRQCQETSEFP-LSDGEHTLLVMAVDQTGRADPNPVAYSWEVN 294
            DP P  ++W  DT+ P T ++S P   T S  S  F F A  P S + C +D G  +  C+ET  F   ++GEHTLLV AVD  G  DP P  ++W V+
Sbjct: 1134 DPTPAQYAWTVDTTAPDTLVVSGPATPTSSA-SASFEFAASEPGSSYECSLD-GAAYVPCEETVTFDGFAEGEHTLLVRAVDAAGNVDPTPAEHTWTVD 1230          
BLAST of mRNA_L-elsbetiae_contig10055.101.1 vs. uniprot
Match: UPI001F3F2D0F (Ig-like domain-containing protein n=1 Tax=Myxococcus stipitatus TaxID=83455 RepID=UPI001F3F2D0F)

HSP 1 Score: 67.4 bits (163), Expect = 7.850e-11
Identity = 39/99 (39.39%), Postives = 55/99 (55.56%), Query Frame = 1
Query:    1 DPQPLSHSWETDTSPPATTILSFPDKFTPSVVSFFFFFFAEGPLSRFMCRMDDGGQWRQCQETSEFP-LSDGEHTLLVMAVDQTGRADPNPVAYSWEVN 294
            D  P  H+W  DT+PP T I + P   T    + F F   E  ++ + C +D G  + +C++ S F   ++GEHTLLV AVD  G  DP P  Y+WEV+
Sbjct: 1160 DATPAEHAWTVDTTPPDTFIDAGPAPVTREQSATFDFRATEA-VNYYECSLD-GAAYVRCEDPSTFEGFAEGEHTLLVRAVDMLGNVDPTPAEYAWEVD 1256          
BLAST of mRNA_L-elsbetiae_contig10055.101.1 vs. uniprot
Match: A0A0H4WNX4_9DELT (Internalin, putative n=2 Tax=Myxococcus hansupus TaxID=1297742 RepID=A0A0H4WNX4_9DELT)

HSP 1 Score: 65.1 bits (157), Expect = 5.040e-10
Identity = 36/99 (36.36%), Postives = 50/99 (50.51%), Query Frame = 1
Query:    1 DPQPLSHSWETDTSPPATTILSFPDKFTPSVVSFFFFFFAEGP--LSRFMCRMDDGGQWRQCQETSEFPLSDGEHTLLVMAVDQTGRADPNPVAYSWEV 291
            D  P SH+W  DT+PP T   +       S+ +  F F A G   + RF C +D GG +  C    +  + DG+HT+LV AVD+ G  D  P  + W V
Sbjct: 1313 DATPASHAWLVDTTPPNTAFTAEVPNALTSLFNARFGFHAPGADDIDRFECSLD-GGPFYTCASPHDLTVGDGDHTMLVRAVDRAGNVDQTPATHFWRV 1410          
BLAST of mRNA_L-elsbetiae_contig10055.101.1 vs. uniprot
Match: A0A250JYJ6_9DELT (Ig-like domain repeat protein n=3 Tax=Corallococcus macrosporus TaxID=35 RepID=A0A250JYJ6_9DELT)

HSP 1 Score: 62.0 bits (149), Expect = 6.130e-9
Identity = 38/99 (38.38%), Postives = 50/99 (50.51%), Query Frame = 1
Query:    1 DPQPLSHSWETDTSPPATTILSFPDKFTPSVVSFFFFFFAEGPLSRFMCRMDDGGQWRQCQETSEFP-LSDGEHTLLVMAVDQTGRADPNPVAYSWEVN 294
            DP P  H+W  DT  P T ++S P   T +  S  F F A  P + F C +D G  +  C     F    +GEH+LLV AVD  G  D +P  Y+W V+
Sbjct: 1820 DPTPAEHAWTVDTVEPDTLVVSGPASPT-NATSATFEFAANEPGATFECSVD-GATYMACPHPVTFEGFVEGEHSLLVRAVDAAGNVDSSPATYTWTVD 1916          
BLAST of mRNA_L-elsbetiae_contig10055.101.1 vs. uniprot
Match: A0A7Y6X1N1_9DELT (Ig-like domain repeat protein n=1 Tax=Myxococcus sp. AM010 TaxID=2745138 RepID=A0A7Y6X1N1_9DELT)

HSP 1 Score: 60.8 bits (146), Expect = 1.520e-8
Identity = 38/103 (36.89%), Postives = 53/103 (51.46%), Query Frame = 1
Query:    1 DPQPLSHSWETDTSPPATTILSFPDKFTPSVVSFFFFFFAEGPLSRFMCRMDDGGQWRQCQE-----TSEFPL-SDGEHTLLVMAVDQTGRADPNPVAYSWEV 291
            D  P  H+W  D +PP T I S PD  T ++++  F F A  P   F C  D GG +  C        +EFPL ++GEH +L+ A+D+ G  D  P  + W V
Sbjct:  567 DASPARHTWTVDLTPPDTQIDSKPDILT-NLLTATFVFSASEPGVHFECSYD-GGAYFACTSPYALPNAEFPLITEGEHRMLIRAIDEAGNPDDTPALHIWTV 667          
BLAST of mRNA_L-elsbetiae_contig10055.101.1 vs. uniprot
Match: A0A7Y4IFU7_MYXXA (Uncharacterized protein n=2 Tax=Myxococcus xanthus TaxID=34 RepID=A0A7Y4IFU7_MYXXA)

HSP 1 Score: 55.5 bits (132), Expect = 1.200e-6
Identity = 32/103 (31.07%), Postives = 45/103 (43.69%), Query Frame = 1
Query:    1 DPQPLSHSWETDTSPPATTILSFPDKFTPSVVSFFFFFFAEGPLSRFMCRMDDGGQWRQCQETSEFP------LSDGEHTLLVMAVDQTGRADPNPVAYSWEV 291
            D  P  H W  D  PP T I   P   T    + F F   +     F C  D G ++R C      P      +++G+HT+L+ AVD+ G  D  P  ++W V
Sbjct: 1010 DASPARHEWRVDLEPPNTVITEKPVALTREQTAVFQFNSPDVDAVAFQCSYD-GTEFRSCASPYILPNSEISIITEGDHTMLIRAVDEAGNWDETPANHNWRV 1111          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10055.101.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D8LBK9_ECTSI3.260e-3669.39OmpA domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5K857_9PHAE1.130e-3568.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7Y6X1J8_9DELT7.360e-1342.42OmpA family protein n=2 Tax=unclassified Myxococcu... [more]
A0A0H4X958_9DELT1.660e-1140.40Internalin, putative n=1 Tax=Myxococcus hansupus T... [more]
A0A4Y6CFA7_MYXXA1.660e-1141.41Cell envelope biogenesis protein OmpA n=19 Tax=Pro... [more]
UPI001F3F2D0F7.850e-1139.39Ig-like domain-containing protein n=1 Tax=Myxococc... [more]
A0A0H4WNX4_9DELT5.040e-1036.36Internalin, putative n=2 Tax=Myxococcus hansupus T... [more]
A0A250JYJ6_9DELT6.130e-938.38Ig-like domain repeat protein n=3 Tax=Corallococcu... [more]
A0A7Y6X1N1_9DELT1.520e-836.89Ig-like domain repeat protein n=1 Tax=Myxococcus s... [more]
A0A7Y4IFU7_MYXXA1.200e-631.07Uncharacterized protein n=2 Tax=Myxococcus xanthus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10055contigL-elsbetiae_contig10055:5324..6452 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score141.7
Seed ortholog evalue1.9e-31
Seed eggNOG ortholog2880.D8LBK9
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cytoskeletal protein binding
EggNOG OGsKOG0613@1,KOG0613@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size318
Cds size318
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815238.5612001-CDS-L-elsbetiae_contig10055:5323..55151622815238.5612001-CDS-L-elsbetiae_contig10055:5323..5515Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10055 5324..5515 -
1691682789.0104353-CDS-L-elsbetiae_contig10055:5323..55151691682789.0104353-CDS-L-elsbetiae_contig10055:5323..5515Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10055 5324..5515 -
1622815238.5772276-CDS-L-elsbetiae_contig10055:6326..64521622815238.5772276-CDS-L-elsbetiae_contig10055:6326..6452Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10055 6327..6452 -
1691682789.0231674-CDS-L-elsbetiae_contig10055:6326..64521691682789.0231674-CDS-L-elsbetiae_contig10055:6326..6452Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10055 6327..6452 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10055.101.1prot_L-elsbetiae_contig10055.101.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10055 5324..6452 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10055.101.1

>prot_L-elsbetiae_contig10055.101.1 ID=prot_L-elsbetiae_contig10055.101.1|Name=mRNA_L-elsbetiae_contig10055.101.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=106bp
DPQPLSHSWETDTSPPATTILSFPDKFTPSVVSFFFFFFAEGPLSRFMCR
MDDGGQWRQCQETSEFPLSDGEHTLLVMAVDQTGRADPNPVAYSWEVNHA
CISMY*
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mRNA from alignment at L-elsbetiae_contig10055:5324..6452-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10055.101.1 ID=mRNA_L-elsbetiae_contig10055.101.1|Name=mRNA_L-elsbetiae_contig10055.101.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1129bp|location=Sequence derived from alignment at L-elsbetiae_contig10055:5324..6452- (Laminarionema elsbetiae ELsaHSoW15)
GACCCTCAGCCTTTGAGCCACTCGTGGGAGACGGACACGTCGCCGCCCGC GACGACCATCCTCTCCTTTCCTGACAAGTTCACTCCGTCCGTGGTAAGTT TTTTTTTTTTTTTTTTTGCTGAGGGCGTGATCTGTACCCAACTTGATGCA TTGGCGTTTGGGTTACATGCAAAGGAACTGCTGCTGTGTGACCACGGTTC AGTACCCCGGCAAGACGCCCTGGTGGCAAGGAGCCCATCGCGCACTGGAA ATAATTACGAAGAAGAAGAAAACAAAATACATGTCAGTCAAGGACCGATC AAAATCGGTGGCGAGTAAGATCTCCGGTGGACTCGTGCTTTCGAGTTTTC CGGGGGATGGGTGGAGCGGGCGGTGTGCGGTGTTTTCAAGGGCAGGCATC AGCTTTTTCTCTCCTTCTGCCCCTACATGTGCCAGTTAGCTCCGGCGTTG GTTGCTGCGATATGGCATGGTTGCTCTCTCCCCTGCCTGAAAACCCTAGA ACCTTCCTCGCTGTGCCTCTCCGGCCGTCGCCGTCTACTCTAAGCCTTCT CGCGGGTGGGTAGTGGGGGCTATGATTTCCACTTTTGCGACACACTCCCA TCTTGTTGTTGTTGTTGTTGTTGTTGTTTGTTGTTGTTGGTGTTGCTATT GTTGTTGGTAGAGTGTCGTTGCTGTGTAGGTATATTTCTTCCTTGTTTTT CCTGTCCTTCAACGTCTGCTTTCTTGTCTCCTGCTTACCTGTGTGTGTGT GTGTGTGTGTGTGTTTACTTCTTATTTACGGATAAATTACCCACACACAC TTTTACCAGTTTTCTTTTTTTTGCCTCCTTTTTGTCTCCTTGTGCCTCTC ACTTTTTTTTGTCGATTTCTTTGTCGATTTTTTTGTCGATTTTTTTTTCG GTCCTCCCCTCCGCAGTTCTCCTTCGGCTCGAGCAAGCCCCTGTCGCGAT TCATGTGCAGGATGGACGACGGCGGGCAGTGGCGGCAGTGCCAGGAGACC TCCGAGTTTCCTCTCAGCGACGGGGAGCACACCCTGTTGGTGATGGCCGT CGATCAGACGGGGCGGGCGGACCCGAATCCGGTCGCCTACAGTTGGGAGG TAAATCATGCATGTATAAGTATGTACTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10055:5324..6452-

>mRNA_L-elsbetiae_contig10055.101.1 ID=mRNA_L-elsbetiae_contig10055.101.1|Name=mRNA_L-elsbetiae_contig10055.101.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=636bp|location=Sequence derived from alignment at L-elsbetiae_contig10055:5324..6452- (Laminarionema elsbetiae ELsaHSoW15)
GACCCTCAGCCTTTGAGCCACTCGTGGGAGACGGACACGTCGCCGCCCGC
GACGACCATCCTCTCCTTTCCTGACAAGTTCACTCCGTCCGTGGTAAGTT
TTTTTTTTTTTTTTTTTGCTGAGGGCGACCCTCAGCCTTTGAGCCACTCG
TGGGAGACGGACACGTCGCCGCCCGCGACGACCATCCTCTCCTTTCCTGA
CAAGTTCACTCCGTCCGTGGTAAGTTTTTTTTTTTTTTTTTTTGCTGAGG
GCCCCCTGTCGCGATTCATGTGCAGGATGGACGACGGCGGGCAGTGGCGG
CAGTGCCAGGAGACCTCCGAGTTTCCTCTCAGCGACGGGGAGCACACCCT
GTTGGTGATGGCCGTCGATCAGACGGGGCGGGCGGACCCGAATCCGGTCG
CCTACAGTTGGGAGGTAAATCATGCATGTATAAGTATGTACTAACCCCTG
TCGCGATTCATGTGCAGGATGGACGACGGCGGGCAGTGGCGGCAGTGCCA
GGAGACCTCCGAGTTTCCTCTCAGCGACGGGGAGCACACCCTGTTGGTGA
TGGCCGTCGATCAGACGGGGCGGGCGGACCCGAATCCGGTCGCCTACAGT
TGGGAGGTAAATCATGCATGTATAAGTATGTACTAA
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