mRNA_L-elsbetiae_contig11107.995.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11107.995.1
Unique NamemRNA_L-elsbetiae_contig11107.995.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11107.995.1 vs. uniprot
Match: D7G0A2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0A2_ECTSI)

HSP 1 Score: 231 bits (589), Expect = 1.810e-72
Identity = 143/239 (59.83%), Postives = 168/239 (70.29%), Query Frame = 1 
Query:  136 RFVEELEVLRSKYGEVDQDALIVKLLVEEFCFTTVEVDDLPALKAQPRDKDKVYLLGETHFHRQQV---VELTSLKPKALEMAGDERLSAVAREALPANKKTSKKAVELMGSTKVVTEKKALKRLGSEMTESMRVLQLKTERKQQREEEQRRANVLGGGNLAA-----GLGGEGGXXXXXXXXXXXXXALGEKSRSSGASMVNMRVGSPSSFTASPMARRATRLLTEVPKFITEMGMGS 828
            RF EE+EVLR+K+GEVDQD LIVKLL+EEF FTTVE  DL ALK +PRDK KVYLLGET+F +  +   V+ ++LKPKALEM GDE+L+  AREALPAN +TSKKAVELMGSTKVVTEKKALKRLGSEM++SMRVLQ+KTERK+                        G+G +GG              + + + S   SM  MRV SP SF +SPMARRATRLLTEVPKFI +MG GS
Sbjct:    6 RFAEEIEVLRAKHGEVDQDGLIVKLLMEEFSFTTVEATDLQALKTRPRDKGKVYLLGETNFMQSPLTERVDYSNLKPKALEMVGDEKLNTEAREALPANTRTSKKAVELMGSTKVVTEKKALKRLGSEMSDSMRVLQIKTERKEXXXXXXXXXXXXXXXXXXXXXXDKGVGADGGRAAD---------GVTQLTLSPTKSMATMRVSSPGSFASSPMARRATRLLTEVPKFIADMGGGS 235
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11107.995.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0A2_ECTSI1.810e-7259.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11107contigL-elsbetiae_contig11107:2213..4502 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_005090.1
Exons3
Model size828
Cds size828
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11107.995.1prot_L-elsbetiae_contig11107.995.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11107 2213..4502 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815325.0213327-CDS-L-elsbetiae_contig11107:2212..26801622815325.0213327-CDS-L-elsbetiae_contig11107:2212..2680Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11107 2213..2680 -
1691682839.7280543-CDS-L-elsbetiae_contig11107:2212..26801691682839.7280543-CDS-L-elsbetiae_contig11107:2212..2680Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11107 2213..2680 -
1622815325.031823-CDS-L-elsbetiae_contig11107:3001..32261622815325.031823-CDS-L-elsbetiae_contig11107:3001..3226Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11107 3002..3226 -
1691682839.7393124-CDS-L-elsbetiae_contig11107:3001..32261691682839.7393124-CDS-L-elsbetiae_contig11107:3001..3226Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11107 3002..3226 -
1622815325.0424552-CDS-L-elsbetiae_contig11107:4367..45021622815325.0424552-CDS-L-elsbetiae_contig11107:4367..4502Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11107 4368..4502 -
1691682839.7533703-CDS-L-elsbetiae_contig11107:4367..45021691682839.7533703-CDS-L-elsbetiae_contig11107:4367..4502Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11107 4368..4502 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11107.995.1

>prot_L-elsbetiae_contig11107.995.1 ID=prot_L-elsbetiae_contig11107.995.1|Name=mRNA_L-elsbetiae_contig11107.995.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=276bp
MGAGGSVAQELASPRIHSNKFSRTHQGHTSTTGVQYREMLEHLRGRFVEE
LEVLRSKYGEVDQDALIVKLLVEEFCFTTVEVDDLPALKAQPRDKDKVYL
LGETHFHRQQVVELTSLKPKALEMAGDERLSAVAREALPANKKTSKKAVE
LMGSTKVVTEKKALKRLGSEMTESMRVLQLKTERKQQREEEQRRANVLGG
GNLAAGLGGEGGGTGGEGGAADGIGALGEKSRSSGASMVNMRVGSPSSFT
ASPMARRATRLLTEVPKFITEMGMGS
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mRNA from alignment at L-elsbetiae_contig11107:2213..4502-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11107.995.1 ID=mRNA_L-elsbetiae_contig11107.995.1|Name=mRNA_L-elsbetiae_contig11107.995.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2290bp|location=Sequence derived from alignment at L-elsbetiae_contig11107:2213..4502- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGCGCCGGCGGCTCTGTTGCCCAGGAGCTCGCTTCGCCTAGGATTCA
TAGCAATAAATTTAGTCGCACCCATCAGGGGCACACCTCCACGACAGGAG
TTCAATACCGCGAAATGCTGGAACATCTTCGAGGCGTGAGTACATATGTA
GTTTAACTACATGTAGGAGTAAATGTGCACGCTTTTTATGGTGTTAGCCT
GTGCATGTTGTATAGATAAATATCTAGATAGACTAAGTATGTACAAAGTA
TTGGTATGCACAAAGATACACTACTGCTGTAGACCAGGCGATCTATCTTG
TATGCAGATGCTGCTACACTGTTGTAATTCTATCCTAGATATGTTTATCT
ACATACTTCATTGTAGGAGTAGTCTACAACGAAATCTAGACTCTCTAGAC
TATTGTACATACTAGATATTAGTGGTGGAGAGATTAGACTAAACACACAC
ACATACATAGTATACATACATACACACATCCGTATGGTTTTTCGACCGAT
CGTACTACAGTAGCTATGTATATGCATGTACAGCAAGCAGCAGAGAAAAA
ACACATTTAGACTAGACTTGTGTGTACACATGTCTAGATATGTGTGACCC
TGAAAGTAGAGGTCGAACAAAGTAACGTGTTACAACCAATTGGGATTGGC
TTCGAGACCTTGAGGACTCGGCTGAGTCAAAATAGACCCCCGGTACATTA
TATTTTCCTGTTTCTAGGTCCTATCTCCTAGATATCTAGATAGTCTAGCT
AGATAGATACCTAAGAATTTGCCGACACCTCTTTGTCCGTCAGGCCGCAG
GTACTACCGTCCACAGATGGGCCCTCGGCAGCGCGTTTGCCTCTATCGCT
CAAACACCAGTCCAATCTACAAACGGAGACAGTCACACCTACAACCATCT
TACAAATAAATCATCCTTTCCTTATTATTCCATAAAATGATGGTGGCGTT
CATCAAGTGGGTGGGGCACAAAGCACGCAGGCACGGTACACTGCGATGTA
GTACACACTGTTGTTTATGTAGATGAATCATTGTTGTTGGACCACATCAA
CACACGCAGAGAAACAGAGTCGAGAAAAAGGCGTCCACAGCTGGACAGGA
AAGCGAGAATTCTGCGTGCGGTACAAGCCACACAGGACTTCTAGAATATA
TCTATATAATAAACACAATCCGTAGATACATACAGCGCTCTCACGCCCAA
AACGCATCAAAATCAAGTTCGATACCCTCTCACCTAACCTTGACTGCCAA
ACAAATGCACAAAACCCAATAACCAGCGATTCGTGGAAGAACTCGAGGTG
CTGCGCTCGAAATACGGCGAAGTCGACCAGGACGCCCTGATCGTCAAACT
CCTCGTGGAAGAGTTCTGCTTCACCACGGTGGAGGTCGACGACCTCCCGG
CCCTCAAGGCGCAACCACGGGACAAGGACAAGGTGTACCTCTTGGGAGAG
ACGCACTTCCACCGGCAGCAGGTCGTGGAGCTGACAAGCCTCAAACCCAA
GGTGAAGGAGATAAGACTGCTGTGCGTTTGCGTGTACAAATATTGGGGGG
GCGGGGGGCGGGGCGAAGAACATTGCATGTACATATATATGTAGGTGGGG
CATCACAAGGCGGCTGGAGCAAGCTGGAGTAGTAGCACCATTGACTTGTA
GCATTCCGGGCGGGGGCGGACTTTGCCTAGCGGTGATGCTCTCTTGGGCG
GAAGGAAAGATCCGTCTCCACGGACGAACTCAGCAGCTGCAAATCCACCC
GTCCGTCCGCAGCATGGACGGTGCATTGCATATCTATACTTTCCAACAAT
TCATCAAAAACGAATTGAGCAGGCGCTCGAGATGGCGGGAGACGAGAGGC
TTTCGGCGGTGGCGAGGGAGGCCTTGCCAGCCAACAAGAAGACGAGCAAG
AAGGCCGTGGAGCTGATGGGGTCCACCAAGGTGGTCACCGAGAAGAAGGC
GCTGAAACGCCTGGGGAGCGAGATGACCGAAAGCATGAGGGTACTTCAGC
TGAAGACGGAGCGGAAGCAGCAGCGGGAAGAGGAGCAGCGGCGAGCGAAC
GTATTAGGTGGTGGTAATTTGGCGGCGGGTCTCGGCGGCGAGGGGGGGGG
CACGGGCGGGGAGGGGGGGGCGGCCGATGGGATCGGGGCATTAGGGGAAA
AGTCCAGGAGCTCGGGAGCATCGATGGTAAACATGAGAGTAGGCTCGCCA
AGCAGTTTTACGGCTTCGCCCATGGCTAGGCGAGCGACTCGTCTGCTCAC
GGAGGTACCAAAGTTCATCACCGAGATGGGGATGGGTAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11107:2213..4502-

>mRNA_L-elsbetiae_contig11107.995.1 ID=mRNA_L-elsbetiae_contig11107.995.1|Name=mRNA_L-elsbetiae_contig11107.995.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1656bp|location=Sequence derived from alignment at L-elsbetiae_contig11107:2213..4502- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGCGCCGGCGGCTCTGTTGCCCAGGAGCTCGCTTCGCCTAGGATTCA
TAGCAATAAATTTAGTCGCACCCATCAGGGGCACACCTCCACGACAGGAG
TTCAATACCGCGAAATGCTGGAACATCTTCGAGGCATGGGCGCCGGCGGC
TCTGTTGCCCAGGAGCTCGCTTCGCCTAGGATTCATAGCAATAAATTTAG
TCGCACCCATCAGGGGCACACCTCCACGACAGGAGTTCAATACCGCGAAA
TGCTGGAACATCTTCGAGGCCGATTCGTGGAAGAACTCGAGGTGCTGCGC
TCGAAATACGGCGAAGTCGACCAGGACGCCCTGATCGTCAAACTCCTCGT
GGAAGAGTTCTGCTTCACCACGGTGGAGGTCGACGACCTCCCGGCCCTCA
AGGCGCAACCACGGGACAAGGACAAGGTGTACCTCTTGGGAGAGACGCAC
TTCCACCGGCAGCAGGTCGTGGAGCTGACAAGCCTCAAACCCAAGCGATT
CGTGGAAGAACTCGAGGTGCTGCGCTCGAAATACGGCGAAGTCGACCAGG
ACGCCCTGATCGTCAAACTCCTCGTGGAAGAGTTCTGCTTCACCACGGTG
GAGGTCGACGACCTCCCGGCCCTCAAGGCGCAACCACGGGACAAGGACAA
GGTGTACCTCTTGGGAGAGACGCACTTCCACCGGCAGCAGGTCGTGGAGC
TGACAAGCCTCAAACCCAAGGCGCTCGAGATGGCGGGAGACGAGAGGCTT
TCGGCGGTGGCGAGGGAGGCCTTGCCAGCCAACAAGAAGACGAGCAAGAA
GGCCGTGGAGCTGATGGGGTCCACCAAGGTGGTCACCGAGAAGAAGGCGC
TGAAACGCCTGGGGAGCGAGATGACCGAAAGCATGAGGGTACTTCAGCTG
AAGACGGAGCGGAAGCAGCAGCGGGAAGAGGAGCAGCGGCGAGCGAACGT
ATTAGGTGGTGGTAATTTGGCGGCGGGTCTCGGCGGCGAGGGGGGGGGCA
CGGGCGGGGAGGGGGGGGCGGCCGATGGGATCGGGGCATTAGGGGAAAAG
TCCAGGAGCTCGGGAGCATCGATGGTAAACATGAGAGTAGGCTCGCCAAG
CAGTTTTACGGCTTCGCCCATGGCTAGGCGAGCGACTCGTCTGCTCACGG
AGGTACCAAAGTTCATCACCGAGATGGGGATGGGTAGCGCGCTCGAGATG
GCGGGAGACGAGAGGCTTTCGGCGGTGGCGAGGGAGGCCTTGCCAGCCAA
CAAGAAGACGAGCAAGAAGGCCGTGGAGCTGATGGGGTCCACCAAGGTGG
TCACCGAGAAGAAGGCGCTGAAACGCCTGGGGAGCGAGATGACCGAAAGC
ATGAGGGTACTTCAGCTGAAGACGGAGCGGAAGCAGCAGCGGGAAGAGGA
GCAGCGGCGAGCGAACGTATTAGGTGGTGGTAATTTGGCGGCGGGTCTCG
GCGGCGAGGGGGGGGGCACGGGCGGGGAGGGGGGGGCGGCCGATGGGATC
GGGGCATTAGGGGAAAAGTCCAGGAGCTCGGGAGCATCGATGGTAAACAT
GAGAGTAGGCTCGCCAAGCAGTTTTACGGCTTCGCCCATGGCTAGGCGAG
CGACTCGTCTGCTCACGGAGGTACCAAAGTTCATCACCGAGATGGGGATG
GGTAGC
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