mRNA_L-elsbetiae_contig10050.95.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10050.95.1
Unique NamemRNA_L-elsbetiae_contig10050.95.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10050.95.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10050contigL-elsbetiae_contig10050:574..3012 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size736
Cds size735
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10050.95.1prot_L-elsbetiae_contig10050.95.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10050 574..3012 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815238.1621184-CDS-L-elsbetiae_contig10050:573..9111622815238.1621184-CDS-L-elsbetiae_contig10050:573..911Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10050 574..911 -
1691682788.813348-CDS-L-elsbetiae_contig10050:573..9111691682788.813348-CDS-L-elsbetiae_contig10050:573..911Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10050 574..911 -
1622815238.17996-CDS-L-elsbetiae_contig10050:1939..20751622815238.17996-CDS-L-elsbetiae_contig10050:1939..2075Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10050 1940..2075 -
1691682788.824686-CDS-L-elsbetiae_contig10050:1939..20751691682788.824686-CDS-L-elsbetiae_contig10050:1939..2075Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10050 1940..2075 -
1622815238.1925657-CDS-L-elsbetiae_contig10050:2751..30121622815238.1925657-CDS-L-elsbetiae_contig10050:2751..3012Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10050 2752..3012 -
1691682788.8325336-CDS-L-elsbetiae_contig10050:2751..30121691682788.8325336-CDS-L-elsbetiae_contig10050:2751..3012Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10050 2752..3012 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10050.95.1

>prot_L-elsbetiae_contig10050.95.1 ID=prot_L-elsbetiae_contig10050.95.1|Name=mRNA_L-elsbetiae_contig10050.95.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=245bp
NSNNYHSHSRGGSTSNDSSADNKALEMPSTWASAQDSSHGSRCGGSGGGG
GGNGSGGDGYGGVGGRTTGGAGKSSSPDGWPNVMSDMLRSFRDVTVSTRG
DLPAGSSGGRVLPRTRALRSRRSFVDVTASREGPPGVAMDEEGDEYEYER
RSVSDPIEHAGRVSPAAHHGEGGHARDVLFSFGKEDDRGNNNNNNNNSSN
NNSSSSNNSSSDDYISNCGSSSGCFGEGPGGGAGGGVDCAEAEDE
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mRNA from alignment at L-elsbetiae_contig10050:574..3012-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10050.95.1 ID=mRNA_L-elsbetiae_contig10050.95.1|Name=mRNA_L-elsbetiae_contig10050.95.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2439bp|location=Sequence derived from alignment at L-elsbetiae_contig10050:574..3012- (Laminarionema elsbetiae ELsaHSoW15)
AACAGCAACAACTACCACAGCCACAGCAGGGGTGGGTCTACCTCCAACGA
CAGCAGTGCCGACAACAAGGCCCTCGAGATGCCATCCACGTGGGCCTCAG
CACAGGATTCATCTCACGGCAGCAGATGTGGCGGTAGCGGCGGCGGCGGC
GGCGGCAACGGCAGCGGCGGTGATGGTTATGGCGGCGTTGGTGGTCGTAC
AACTGGCGGTGCTGGCAAGAGCTCTTCTCCGGACGGCTGGCCAAATGTCA
TGAGCGATATGGTGCGTTTCTGCTGGTCGTACAATACTGGCTTAACTGCC
GCACCTCTCCGCCCTCTTTGAAAATAAATCAGGAAATCGAAGAAAGACCC
CCCCCACAATTAGAGACAGGACTGACTCCGTGGTGAATTAACAATTCAAT
ACACAGCAGTGATGCAGCATTGGTCCAGCCGAGTAGAAAAACACCTCTTT
GTTTTATTCTGTAAGCGGTGCACGTGCATGGACCCTCCTCACAAGATGCC
ATAATTTTCTTAAGCCAAGGATCACGATCGAACACCGGCAGTAATCTACG
TCCAGCGTTTATATGTTTATTTTCGTCTAGATGTACATCTGTCCCCCTTG
CTCCTCTGTCAGATGGATACAAAATTAAAACATTAATTTATTTGGTTCTG
CTGCTGCCGTCATCCGCCCCCATATGCCTCATTTTCAACCAGCGGGGCCC
CTGCGCGTTGGGGCCGGAATCACCCTACCCCCCTTTCCCATTCCCCGCGC
ACTGTCGTGTTTTCCGTCTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCT
GCTGCTGCTGCTGCTGCTGCTGACTTTGCCCCCGCCGCCGCTGCCGCCGC
TGCTGCCGCTGCCGCTGCCGCTGCTGCGCCCCCCAACCGACCCCACCCGA
TCCCGCCGACGCCCCCACTCACACCTCCTGCCTACAGCTACGATCGTTCA
GAGACGTCACGGTCTCGACCCGCGGGGACTTGCCAGCCGGTTCGTCCGGG
GGAAGGGTGCTGCCGCGGACGCGTGCCCTGCGCTCGCGCCGAAGCTTCGT
CGACGTTACCGCCTCCCGCGAAGGTGCGTCTGCAGGCATGCGGTTGGTTG
GTTATCGGCTACACTTTGCTCTCGTTGATTTTCAGGCACTGGTTTGGCGG
GATGTATGTACATAGCTTGATTTTCTTCTTCGTGCAGACTGTAAGGGGAG
TTTACAGCTCCTTTGTTTCCACGTGTGGTCGACATCAGGGAACGTCCCGG
TACCAAAGCTTCAGTAGGGTGCGGCAGGTGCTGTAGTCCTCTCGCACTCT
TTTCGCAGAATAGGTTTGAGATTTCTGAAGGATAGATTATCCCAAACGTA
CGAAATAAGATGCTGCGGCGGTTTTGAAACATTCCCGGGTGTCGATTGAA
TAACAACGCCTCCACCTCTATCCAAAACTATGGCTGGCTGCGGGCGAGAG
AAGCCTCGGAAACATTCATGGGGAACAGGCATCCGCCTTAAGTCAATCCA
TGATCGTCGCGCTGCCTCAGGGAATCACGGAGTAAATGATGTCGTCTTAC
AATAGCTGCTGCTGAAGCCTGTGGGGGGCTTTTTGAAAGGAGACTCGTCA
TCCTCTCTATTTATTAGCTTAATAAACAGCTTGTCGACCACTGCTGCTTC
AGCGTCGTGAACGCGTCTTGGAAGCCGCCGGTCGGTACGATCGGTCCTGC
CCTGACCTAAGAACCAGAAAACTTCTGTTCGCATGAGCTCTAACCTCCTT
GGCGAGAACGCCTAGGAACCGTCTCTGCGTTTCTGCATACATACCCCAAA
CATTATGCCGTATGTATGCAGAAACGCAGAGACGGACGGTGCCTCGATCC
GGTATAGGATGGCAATCAGTATTTTACTTTTCCAAAGGCATGCGTGGAAA
AACGTCAGCTGATGTGTGGCACACAAGAAATCAGCGGACCGTACACCGTA
CGAAGCCGTTCTCAGTTTCAACGTAAGAAGGAGATTTTTGGTACCGTACA
CGTACTTCCTTTGAATACCGTCCTTATTTCTGTTTTTAACATTTGTTTCG
GCGTGCCCTCCCTCGTTCACAACCAACCCTAAACAATCAATACAACGCCA
GGCCCCCCGGGCGTGGCGATGGACGAAGAAGGCGACGAGTACGAGTACGA
GAGGCGTTCGGTAAGCGATCCGATCGAGCACGCCGGTCGAGTCAGCCCGG
CAGCTCACCATGGAGAAGGGGGCCATGCGAGAGACGTTTTGTTCTCCTTC
GGCAAGGAAGATGACAGGGGCAACAACAACAACAACAACAACAACAGCAG
CAACAACAACAGCAGCAGCAGCAACAACAGCAGCAGCGACGACTATATCA
GCAACTGCGGCTCCAGCAGCGGCTGTTTCGGTGAGGGGCCCGGTGGCGGG
GCCGGCGGAGGTGTAGACTGCGCCGAAGCTGAAGACGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10050:574..3012-

>mRNA_L-elsbetiae_contig10050.95.1 ID=mRNA_L-elsbetiae_contig10050.95.1|Name=mRNA_L-elsbetiae_contig10050.95.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1470bp|location=Sequence derived from alignment at L-elsbetiae_contig10050:574..3012- (Laminarionema elsbetiae ELsaHSoW15)
AACAGCAACAACTACCACAGCCACAGCAGGGGTGGGTCTACCTCCAACGA
CAGCAGTGCCGACAACAAGGCCCTCGAGATGCCATCCACGTGGGCCTCAG
CACAGGATTCATCTCACGGCAGCAGATGTGGCGGTAGCGGCGGCGGCGGC
GGCGGCAACGGCAGCGGCGGTGATGGTTATGGCGGCGTTGGTGGTCGTAC
AACTGGCGGTGCTGGCAAGAGCTCTTCTCCGGACGGCTGGCCAAATGTCA
TGAGCGATATGAACAGCAACAACTACCACAGCCACAGCAGGGGTGGGTCT
ACCTCCAACGACAGCAGTGCCGACAACAAGGCCCTCGAGATGCCATCCAC
GTGGGCCTCAGCACAGGATTCATCTCACGGCAGCAGATGTGGCGGTAGCG
GCGGCGGCGGCGGCGGCAACGGCAGCGGCGGTGATGGTTATGGCGGCGTT
GGTGGTCGTACAACTGGCGGTGCTGGCAAGAGCTCTTCTCCGGACGGCTG
GCCAAATGTCATGAGCGATATGCTACGATCGTTCAGAGACGTCACGGTCT
CGACCCGCGGGGACTTGCCAGCCGGTTCGTCCGGGGGAAGGGTGCTGCCG
CGGACGCGTGCCCTGCGCTCGCGCCGAAGCTTCGTCGACGTTACCGCCTC
CCGCGAAGCTACGATCGTTCAGAGACGTCACGGTCTCGACCCGCGGGGAC
TTGCCAGCCGGTTCGTCCGGGGGAAGGGTGCTGCCGCGGACGCGTGCCCT
GCGCTCGCGCCGAAGCTTCGTCGACGTTACCGCCTCCCGCGAAGGCCCCC
CGGGCGTGGCGATGGACGAAGAAGGCGACGAGTACGAGTACGAGAGGCGT
TCGGTAAGCGATCCGATCGAGCACGCCGGTCGAGTCAGCCCGGCAGCTCA
CCATGGAGAAGGGGGCCATGCGAGAGACGTTTTGTTCTCCTTCGGCAAGG
AAGATGACAGGGGCAACAACAACAACAACAACAACAACAGCAGCAACAAC
AACAGCAGCAGCAGCAACAACAGCAGCAGCGACGACTATATCAGCAACTG
CGGCTCCAGCAGCGGCTGTTTCGGTGAGGGGCCCGGTGGCGGGGCCGGCG
GAGGTGTAGACTGCGCCGAAGCTGAAGACGAGGCCCCCCGGGCGTGGCGA
TGGACGAAGAAGGCGACGAGTACGAGTACGAGAGGCGTTCGGTAAGCGAT
CCGATCGAGCACGCCGGTCGAGTCAGCCCGGCAGCTCACCATGGAGAAGG
GGGCCATGCGAGAGACGTTTTGTTCTCCTTCGGCAAGGAAGATGACAGGG
GCAACAACAACAACAACAACAACAACAGCAGCAACAACAACAGCAGCAGC
AGCAACAACAGCAGCAGCGACGACTATATCAGCAACTGCGGCTCCAGCAG
CGGCTGTTTCGGTGAGGGGCCCGGTGGCGGGGCCGGCGGAGGTGTAGACT
GCGCCGAAGCTGAAGACGAG
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