prot_L-elsbetiae_contig11044.944.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig11044.944.1
Unique Nameprot_L-elsbetiae_contig11044.944.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length255
Homology
BLAST of mRNA_L-elsbetiae_contig11044.944.1 vs. uniprot
Match: D8LFV0_ECTSI (White-brown-complex ABC transporter family (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFV0_ECTSI)

HSP 1 Score: 275 bits (702), Expect = 9.960e-84
Identity = 187/223 (83.86%), Postives = 196/223 (87.89%), Query Frame = 0
Query:    2 DVGGKHVRVDRAKTGEYDHTRSVFLGNLPMDAGDEEVRALFSSKLEGGGKAVEGVRLVRDKATLIGKGFGYVLLADRALAAAALALQGTKLRGRSLRVMPCGKRTKGRGGVAKPGLEDHKFASFEGRRTTDVGVMRRLKRKQDASDAEGGSGGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGGRNNGPKKPRWTTADGVRAGKSLGGQAPA 224
            DVGGKHVRVDRAK+GEYDHTRSVFLGNLPMDAG+EEVR LF+SKLEGG K+VEGVRLVRDKATL+GKGFGYVLLADRALAAAALALQGTKL+GR LRVMPCGKRTKGRGGVAKPGLEDHKFASFEGRRTTDVGV+RRLKRKQ          G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     G     KKPRWTT DGVRAGK+ GG+A A
Sbjct:  420 DVGGKHVRVDRAKSGEYDHTRSVFLGNLPMDAGEEEVRELFASKLEGGPKSVEGVRLVRDKATLVGKGFGYVLLADRALAAAALALQGTKLKGRPLRVMPCGKRTKGRGGVAKPGLEDHKFASFEGRRTTDVGVLRRLKRKQQE--------GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSESDGNGKAFKKPRWTTEDGVRAGKAAGGRATA 634          
BLAST of mRNA_L-elsbetiae_contig11044.944.1 vs. uniprot
Match: A0A6H5KDC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDC0_9PHAE)

HSP 1 Score: 206 bits (524), Expect = 1.200e-59
Identity = 105/117 (89.74%), Postives = 111/117 (94.87%), Query Frame = 0
Query:    2 DVGGKHVRVDRAKTGEYDHTRSVFLGNLPMDAGDEEVRALFSSKLEGGGKAVEGVRLVRDKATLIGKGFGYVLLADRALAAAALALQGTKLRGRSLRVMPCGKRTKGRGGVAKPGLE 118
            DVGGKHVRVDRAK+GEYDHTRSVFLGNLPMDA +EEVR LF+SKLEGG K+VEGVRLVRDKATL+GKGFGYVLLADRALAAAALAL GTKL+GR LRVMPCGKRTKGRGGVAKPG E
Sbjct:  406 DVGGKHVRVDRAKSGEYDHTRSVFLGNLPMDAAEEEVRELFASKLEGGPKSVEGVRLVRDKATLVGKGFGYVLLADRALAAAALALHGTKLKGRPLRVMPCGKRTKGRGGVAKPGQE 522          
BLAST of mRNA_L-elsbetiae_contig11044.944.1 vs. uniprot
Match: A0A835YND0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YND0_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.090e-25
Identity = 65/111 (58.56%), Postives = 74/111 (66.67%), Query Frame = 0
Query:    2 DVGGKHVRVDRAKTGEYDHTRSVFLGNLPMDAGDEEVRALFSSKLEGGGKAVEGVRLVRDKATLIGKGFGYVLLADRALAAAALALQGTKLRGRSLRVMPCGKRTKG-RGG 111
            ++ G H+RVD A     D  RSVFLGNLP D  +EEVRA FS   E G  A+EGVRL+RD  T +GKGFGYVL  D A   AAL L G+ LR R LRV  CG+RTKG RGG
Sbjct:  272 ELNGHHLRVDSAARPTVDPARSVFLGNLPFDVREEEVRAHFSEISEDGTAAIEGVRLIRDPDTQLGKGFGYVLFRDAATVGAALRLDGSALRKRELRVHVCGRRTKGGRGG 382          
BLAST of mRNA_L-elsbetiae_contig11044.944.1 vs. uniprot
Match: A0A7S2WDD9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WDD9_9STRA)

HSP 1 Score: 107 bits (267), Expect = 2.520e-24
Identity = 61/112 (54.46%), Postives = 74/112 (66.07%), Query Frame = 0
Query:    6 KHVRVDRAKTGEYDHTRSVFLGNLPMDAGDEEVRALFSSKLEGG---GKAVEGVRLVRDKATLIGKGFGYVLLADRALAAAALALQGTKLRGRSLRVMPCGKRTKGRGGVAK 114
            +H+R+D A   ++D  RSVFLGNLP DA +E+VR  F+S LE     G  VEGVR+VRD  T  GKGFGYVLL++R   A AL L  +   GR +RVM CGKR KGR G  K
Sbjct:   65 RHLRIDSATRKDFDAQRSVFLGNLPFDADEEDVRKHFASVLETSAEDGPVVEGVRIVRDALTQRGKGFGYVLLSNRTAVAQALQLHESTFAGRKIRVMTCGKRFKGRRGQPK 176          
BLAST of mRNA_L-elsbetiae_contig11044.944.1 vs. uniprot
Match: W7U9S2_9STRA (Rna binding protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U9S2_9STRA)

HSP 1 Score: 105 bits (262), Expect = 2.400e-22
Identity = 60/104 (57.69%), Postives = 71/104 (68.27%), Query Frame = 0
Query:    3 VGGKHVRVDRAKTGEY-DHTRSVFLGNLPMDAGDEEVRALFSSKLEGGGKAVEGVRLVRDKATLIGKGFGYVLLADRALAAAALALQGTKLRGRSLRVMPCGKR 105
            V  KH+RVDR  +    D  RSVFLGNLP DA ++ +RA  + +LEGG   VEGVRLVRD  T  GKGFG+VLL D+A  AAAL L GT  +GR +RV  CGKR
Sbjct:  300 VEAKHLRVDRVGSETIRDPKRSVFLGNLPFDAKEDTIRAHVAQELEGGPGDVEGVRLVRDPETQQGKGFGFVLLKDKASVAAALRLNGTSFQGRKIRVTTCGKR 403          
BLAST of mRNA_L-elsbetiae_contig11044.944.1 vs. uniprot
Match: A0A397AYA5_9STRA (RRM domain-containing protein n=8 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397AYA5_9STRA)

HSP 1 Score: 101 bits (252), Expect = 7.090e-21
Identity = 68/147 (46.26%), Postives = 88/147 (59.86%), Query Frame = 0
Query:    6 KHVRVDRAKTGEYDHTRSVFLGNLPMDAGDEEVRALFSSKL--EGGGKAVEGVRLVRDKATLIGKGFGYVLLADRALAAAALALQGTKLRGRSLRVMPCGKRTKGRGGVAKPGLEDHKFASFEGRRTTDVGVMRRLKRKQDASDAEG 150
            K +RVDR K    D  RSVF+GNL  +A D++VR+ F   L  +    AVE VR++RDK T +GKGFGYVL  D + AA AL+L G+K+  R LRV  CGKR K   G  KP L+      FEGRR      +R LK+++    A+G
Sbjct:  348 KVLRVDR-KAVSMDAKRSVFVGNLAFNATDDDVRSHFDKVLREDADTAAVESVRIIRDKVTHLGKGFGYVLFKDLSTAAKALSLHGSKMGKRELRVTVCGKRFKNTHGDKKPELK------FEGRRAHPGAQLRLLKKRKAEEPADG 487          
BLAST of mRNA_L-elsbetiae_contig11044.944.1 vs. uniprot
Match: A0A7R9UAS7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAS7_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.770e-20
Identity = 64/153 (41.83%), Postives = 92/153 (60.13%), Query Frame = 0
Query:    2 DVGGKHVRVDRAKTGE--YDHTRSVFLGNLPMDAGDEEVRALFSSKLEG--GGKAVEGVRLVRDKATLIGKGFGYVLLADRALAAAALALQGTKLRGRSLRVMPCGKR--TKGRGGVAKPGLEDHKFA----SFEGRRTTDV-GVMRRLKRKQ 143
            ++G +H+RVDR +  +  ++ +R++FLG+LP    +E+VR  F   L    GG  V+GVRL+RDK+TL+GKGFGY+LL+ +A  A AL L      GR  RV  CG+R  T+   G  KP  +  K      SFEG R +++ G  RRL  K+
Sbjct:  177 ELGDRHIRVDRLQGSQALFNASRTLFLGSLPYTVDEEDVRHKFIELLSASHGGDVVQGVRLIRDKSTLLGKGFGYLLLSSKAAVADALRLPEVSFGGRVARVQTCGRRFKTQNARGDVKPEKKQKKAKRNAESFEGARASELDGARRRLASKK 329          
BLAST of mRNA_L-elsbetiae_contig11044.944.1 vs. uniprot
Match: A0A6U4FX26_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4FX26_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 1.940e-20
Identity = 68/150 (45.33%), Postives = 89/150 (59.33%), Query Frame = 0
Query:    3 VGGKHVRVDRA-----KTGEYDHTRSVFLGNLPMDAGDEEVRALFSSKL-EGGGK-AVEGVRLVRDKATLIGKGFGYVLLADRALAAAALALQGTKLRGRSLRVMPCGKRTKGRGGV---AKPGLEDHKFA-SFEGRRTTDV-GVMRRLK 140
            VG +H+RV+R      + G ++   S+FLGNLP +  +E+VRA F+  L EG G  AV GVRL+RD+ T  GKGFGYVL   RA  A AL L+G K   R +R+  CG+R K +       K G +  K A +FEG R  D+ G  RRLK
Sbjct:   31 VGERHLRVERLGGAAKRDGLFNAGESLFLGNLPWNVDEEDVRAKFNELLAEGHGDGAVRGVRLIRDRETQKGKGFGYVLFGSRAAVADALRLKGVKFGRREVRMQVCGRRYKSQNPADVGEKKGKKKRKAAEAFEGVRAADLSGAARRLK 180          
BLAST of mRNA_L-elsbetiae_contig11044.944.1 vs. uniprot
Match: A0A485LPI4_9STRA (Aste57867_24108 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LPI4_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 6.450e-20
Identity = 68/140 (48.57%), Postives = 79/140 (56.43%), Query Frame = 0
Query:    6 KHVRVDRAKTGEYDHTRSVFLGNLPMDAGDEEVRALFSSKLEGGGKA--VEGVRLVRDKATLIGKGFGYVLLADRALAAAALALQGTKLRGRSLRVMPCGKRTKGRGGVAKPGLEDHKFASFEGRRTTDVGVMRRLKRKQ 143
            K +RVDR KT   D  RSVF+GN+   A D++VR  F   L  G     VE VRL+RDK T +GKGFGYVLL D + AA ALAL G K+  R LRV  CGKR K   G  K          FEGRR      MR  K++Q
Sbjct:  244 KVIRVDR-KTVSMDAKRSVFVGNVAFTATDDDVRKHFEKALRDGDDTPVVESVRLIRDKTTHLGKGFGYVLLRDVSTAAKALALNGQKMGKRELRVTVCGKRFKNTQGEKKVD------GKFEGRRARPGAQMRLQKKRQ 376          
BLAST of mRNA_L-elsbetiae_contig11044.944.1 vs. uniprot
Match: A0A024TR24_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TR24_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.100e-18
Identity = 63/140 (45.00%), Postives = 83/140 (59.29%), Query Frame = 0
Query:    6 KHVRVDRAKTGEYDHTRSVFLGNLPMDAGDEEVRALFSSKL--EGGGKAVEGVRLVRDKATLIGKGFGYVLLADRALAAAALALQGTKLRGRSLRVMPCGKRTKGRGGVAKPGLEDHKFASFEGRRTTDVGVMRRLKRKQ 143
            K +RVDR K    D  R+VF+GNL   A D++VR  F   L  +    AVE VR++RDK+T +GKGFGYVL  D + AA AL+L  +K+  R +RV  CGKR K  GG   P L+      FEGRR      +R LK+++
Sbjct:  274 KCLRVDR-KNVSMDAKRTVFVGNLAFTATDDDVRNHFEKALREDADTPAVESVRIIRDKSTHLGKGFGYVLFKDVSTAAKALSLHESKMGKREIRVTVCGKRFKNTGGEKAPELK------FEGRRARPGAQLRMLKKRK 406          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11044.944.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFV0_ECTSI9.960e-8483.86White-brown-complex ABC transporter family (Partia... [more]
A0A6H5KDC0_9PHAE1.200e-5989.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YND0_9STRA1.090e-2558.56Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2WDD9_9STRA2.520e-2454.46Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
W7U9S2_9STRA2.400e-2257.69Rna binding protein n=1 Tax=Nannochloropsis gadita... [more]
A0A397AYA5_9STRA7.090e-2146.26RRM domain-containing protein n=8 Tax=Aphanomyces ... [more]
A0A7R9UAS7_9STRA1.770e-2041.83Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A6U4FX26_9STRA1.940e-2045.33Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A485LPI4_9STRA6.450e-2048.57Aste57867_24108 protein n=1 Tax=Aphanomyces stella... [more]
A0A024TR24_9STRA1.100e-1845.00Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 23..100
e-value: 1.4E-11
score: 54.5
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 24..98
e-value: 1.0E-8
score: 34.8
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 22..99
score: 13.669
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 13..110
e-value: 1.1E-17
score: 66.1
NoneNo IPR availablePANTHERPTHR23236EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4Hcoord: 15..110
NoneNo IPR availablePANTHERPTHR23236:SF25RNA-BINDING PROTEIN 34coord: 15..110
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 21..114

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11044contigL-elsbetiae_contig11044:953..5801 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11044.944.1mRNA_L-elsbetiae_contig11044.944.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig11044 932..5801 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig11044.944.1 ID=prot_L-elsbetiae_contig11044.944.1|Name=mRNA_L-elsbetiae_contig11044.944.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=255bp
MDVGGKHVRVDRAKTGEYDHTRSVFLGNLPMDAGDEEVRALFSSKLEGGG
KAVEGVRLVRDKATLIGKGFGYVLLADRALAAAALALQGTKLRGRSLRVM
PCGKRTKGRGGVAKPGLEDHKFASFEGRRTTDVGVMRRLKRKQDASDAEG
GSGGDGRGGGGGRGGAGRGGAGRGGGRGGGGGGGGGGNGSAGDDGGRNNG
PKKPRWTTADGVRAGKSLGGQAPAAAAAVIPTPGGRGRGRGGGGGRSPGG
RGRGG
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf