mRNA_L-elsbetiae_contig11033.934.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11033.934.1
Unique NamemRNA_L-elsbetiae_contig11033.934.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11033.934.1 vs. uniprot
Match: A0A6H5JD37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD37_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 1.440e-21
Identity = 67/115 (58.26%), Postives = 75/115 (65.22%), Query Frame = 2 
Query:  875 GMLPFEERHRKADRNRKIYIAVAALAVAAGIMYAVSSTEYSAAAAAANL--DGGARGVGGAWE---GGALRTPVRAAKRAAAAAADYLRRWRSGRVAMLREGG----AYVGTVGS 1192
            GMLPFEERHRKADRNRKIYIAVAALAVAAG++YAVSS+   +A+AAANL   GG+   G  W+   GGALR P+RAAKRA     DY   WR          G     YVG VG 
Sbjct:    2 GMLPFEERHRKADRNRKIYIAVAALAVAAGLVYAVSSSTEQSASAAANLADTGGSGSRGAGWKAGVGGALRAPMRAAKRAXXXXXDY---WRCXXXXXXXXXGEVLGGYVGAVGG 113
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BLAST of mRNA_L-elsbetiae_contig11033.934.1 vs. uniprot
Match: D8LB08_ECTSI (Miro-related GTP-ase 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB08_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 1.520e-20
Identity = 71/116 (61.21%), Postives = 78/116 (67.24%), Query Frame = 2 
Query:  872 KGMLPFEERHRKADRNRKIYIAVAALAVAAGIMYAVSSTEYSAAAAAANL--DGGARGVGGAWE---GGALRTPVRAAKRAAAAAADYLRRWRSGRVAMLREGG----AYVGTVGS 1192
            KGMLPFEERHRKADRNRKIYIAVAALAVAAG++YAVSS+   +A+AAANL   GG+   G  WE   GGALR P+RAAKRAA    DY   WR         GG     YVG VG 
Sbjct:  748 KGMLPFEERHRKADRNRKIYIAVAALAVAAGLVYAVSSSTEQSASAAANLADTGGSGSRGAGWESGVGGALRAPMRAAKRAAXXXXDY---WRRXXXXXXXGGGEVLGGYVGAVGG 860
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BLAST of mRNA_L-elsbetiae_contig11033.934.1 vs. uniprot
Match: D7FZN8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZN8_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 4.640e-11
Identity = 38/48 (79.17%), Postives = 42/48 (87.50%), Query Frame = 2 
Query:  878 MLPFEERHRKADRNRKIYIAVAALAVAAGIMYAVSSTEYSAAAAAANL 1021
            MLPFEERHRKAD NRKIYIAVAALAVAAG++ AVSS+   +AAAA NL
Sbjct:    1 MLPFEERHRKADNNRKIYIAVAALAVAAGLVCAVSSSTEHSAAAAVNL 48
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11033.934.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JD37_9PHAE1.440e-2158.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LB08_ECTSI1.520e-2061.21Miro-related GTP-ase 1 n=1 Tax=Ectocarpus siliculo... [more]
D7FZN8_ECTSI4.640e-1179.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11033contigL-elsbetiae_contig11033:1512..3461 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.5
Seed ortholog evalue5.1e-21
Seed eggNOG ortholog2880.D8LB08
Preferred nameRHOT2
KEGG koko:K06883,ko:K07870,ko:K07871
KEGG Pathwayko04137,ko04214,map04137,map04214
Hectar predicted targeting categorysignal anchor
GOsGO:0000001,GO:0000003,GO:0000166,GO:0000226,GO:0000287,GO:0000902,GO:0000904,GO:0001101,GO:0001505,GO:0001882,GO:0001883,GO:0003006,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005509,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005783,GO:0005829,GO:0005886,GO:0006464,GO:0006508,GO:0006807,GO:0006810,GO:0006839,GO:0006915,GO:0006928,GO:0006996,GO:0007005,GO:0007006,GO:0007010,GO:0007017,GO:0007018,GO:0007154,GO:0007165,GO:0007275,GO:0008088,GO:0008150,GO:0008152,GO:0008219,GO:0008637,GO:0009653,GO:0009719,GO:0009725,GO:0009737,GO:0009790,GO:0009791,GO:0009793,GO:0009826,GO:0009856,GO:0009860,GO:0009932,GO:0009966,GO:0009987,GO:0010033,GO:0010154,GO:0010570,GO:0010646,GO:0010821,GO:0010970,GO:0012501,GO:0012505,GO:0016020,GO:0016021,GO:0016043,GO:0016049,GO:0016192,GO:0016462,GO:0016579,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019538,GO:0019725,GO:0019867,GO:0019896,GO:0022406,GO:0022414,GO:0023051,GO:0023052,GO:0030154,GO:0030705,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031306,GO:0031307,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0032386,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032592,GO:0032865,GO:0032879,GO:0032886,GO:0032989,GO:0032991,GO:0033043,GO:0033993,GO:0034640,GO:0034643,GO:0035639,GO:0035794,GO:0036094,GO:0036211,GO:0040007,GO:0040008,GO:0042221,GO:0042592,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044232,GO:0044233,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044432,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044706,GO:0046872,GO:0046902,GO:0046907,GO:0046928,GO:0047497,GO:0048308,GO:0048311,GO:0048316,GO:0048468,GO:0048489,GO:0048583,GO:0048588,GO:0048589,GO:0048608,GO:0048731,GO:0048856,GO:0048868,GO:0048869,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050804,GO:0050896,GO:0051046,GO:0051049,GO:0051056,GO:0051128,GO:0051179,GO:0051234,GO:0051270,GO:0051588,GO:0051640,GO:0051641,GO:0051646,GO:0051648,GO:0051649,GO:0051650,GO:0051654,GO:0051656,GO:0051704,GO:0051716,GO:0055081,GO:0055088,GO:0055091,GO:0060237,GO:0060341,GO:0060560,GO:0060632,GO:0061024,GO:0061458,GO:0065007,GO:0065008,GO:0070646,GO:0070647,GO:0071704,GO:0071840,GO:0071944,GO:0072384,GO:0090559,GO:0097159,GO:0097190,GO:0097305,GO:0097345,GO:0097367,GO:0097479,GO:0097480,GO:0098573,GO:0098588,GO:0098796,GO:0098798,GO:0098799,GO:0098805,GO:0098930,GO:0099003,GO:0099098,GO:0099111,GO:0099177,GO:0140056,GO:1900428,GO:1901265,GO:1901363,GO:1901564,GO:1901700,GO:1902108,GO:1902110,GO:1902513,GO:1902531,GO:1902686,GO:1903338,GO:1903530,GO:1905710,GO:1990456
EggNOG free text desc.GTPase activity
EggNOG OGsCOG1100@1,KOG1707@2759
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03029,ko04031
Ec32 ortholog descriptionMiro-related GTP-ase 1
Ec32 orthologEc-27_005710.1
Exons1
Model size1950
Cds size408
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11033.934.1prot_L-elsbetiae_contig11033.934.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11033 2302..2709 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815319.1221466-UTR-L-elsbetiae_contig11033:1511..23011622815319.1221466-UTR-L-elsbetiae_contig11033:1511..2301Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11033 1512..2301 +
1691682835.8768036-UTR-L-elsbetiae_contig11033:1511..23011691682835.8768036-UTR-L-elsbetiae_contig11033:1511..2301Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11033 1512..2301 +
1622815319.144193-UTR-L-elsbetiae_contig11033:2709..34611622815319.144193-UTR-L-elsbetiae_contig11033:2709..3461Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11033 2710..3461 +
1691682835.9051228-UTR-L-elsbetiae_contig11033:2709..34611691682835.9051228-UTR-L-elsbetiae_contig11033:2709..3461Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11033 2710..3461 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815319.1342835-CDS-L-elsbetiae_contig11033:2301..27091622815319.1342835-CDS-L-elsbetiae_contig11033:2301..2709Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11033 2302..2709 +
1691682835.8959708-CDS-L-elsbetiae_contig11033:2301..27091691682835.8959708-CDS-L-elsbetiae_contig11033:2301..2709Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11033 2302..2709 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11033.934.1

>prot_L-elsbetiae_contig11033.934.1 ID=prot_L-elsbetiae_contig11033.934.1|Name=mRNA_L-elsbetiae_contig11033.934.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=136bp
MYLPRSLPRGRCANRRNAQTRSASACSKGMLPFEERHRKADRNRKIYIAV
AALAVAAGIMYAVSSTEYSAAAAAANLDGGARGVGGAWEGGALRTPVRAA
KRAAAAAADYLRRWRSGRVAMLREGGAYVGTVGSL*
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mRNA from alignment at L-elsbetiae_contig11033:1512..3461+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11033.934.1 ID=mRNA_L-elsbetiae_contig11033.934.1|Name=mRNA_L-elsbetiae_contig11033.934.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1950bp|location=Sequence derived from alignment at L-elsbetiae_contig11033:1512..3461+ (Laminarionema elsbetiae ELsaHSoW15)
ACATGTACCAGTATACAAGTTAGACTGGGGCCTTAGACCCCTACCGACCA
CCAAAAAGCGCCAGCCTGCGAACATATATATTTTTTCTTTTTCGGGGGGT
ACACAGATATACAATTGACCTGGTTTAAGATAGAGAACTGGGAACATGGA
TTGCTGGCATCTGGCAGAGACATGGATCTTCATACGCCACATAACCTATC
TACAGGACACAATGAACAATTCACTCGGACTGTATTTTTGATGCGCACCC
TGAACGGCAAGAAATGCCGAAATTAGTGGATTTTTGGACGGTTTTGCATG
TGGCTTGGAATCTGCTGCATCACAAAAAAAATGAGTCCAAGGGATTTCTA
GCGTTGGTTTCTGCGCAGGCAACGAAAAAAAACGCTCCCCAATCAACACT
CCAGCCCAGAGAATTATGTGACGCAGGATCGTCAGTTTGTGACCAATACA
AAAAAAATGTATGTTTGTCCTTTGTTCGACCGAATTGAGAGCTCGCACTG
TGAAGTGCTTTGCACCATCGGGTGACTCAGGGCCGGCCGACCTCTTCTCA
CCAAACGAGCTGCATTGGTTGGTTGTGCGCCCGTGTGGATGTCATGGCAC
CCGGAACTGCTGTGTGTTTATAGTGTGTGCAAGGCTACATACCTTGGCAC
TTGGCCACACAGGCTGTTTTGATCGCGCTTGACGTAAAAGTCGCTACTCT
TCAGACCGTTTTCTGTTCATAGTTGATGCAGTAGCAGCAGTTCGCATGGT
GATTTTACCCTGAACACGTTCCTCCCCCGCCTCATCTCGTATGTATTTAC
CCCGTTCGCTCCCACGGGGCCGCTGTGCCAACCGCCGCAACGCGCAAACT
CGGTCCGCCTCTGCATGCAGCAAGGGGATGCTGCCGTTCGAGGAGCGGCA
CAGGAAGGCTGACCGCAACCGCAAGATCTACATCGCTGTTGCCGCTCTCG
CCGTGGCTGCCGGAATCATGTACGCGGTCTCCTCCACGGAGTACTCCGCC
GCCGCCGCTGCAGCAAACCTTGACGGGGGGGCCCGTGGCGTCGGCGGGGC
ATGGGAAGGGGGGGCGCTGCGCACACCCGTGCGTGCCGCGAAGCGCGCAG
CTGCGGCCGCGGCAGATTACCTGCGGCGTTGGAGATCTGGGAGGGTGGCG
ATGTTGCGGGAGGGAGGAGCGTACGTTGGAACCGTTGGGAGCCTTTAGTG
GGAAAAGCTTTAGGGCATCTGTTGTTTGGATACACGCAGACGACGTTGGT
GACGGGTGATCCATTTTCCGGAAAAGCTTTGGGGCATCTGTCGTTTGTCT
AGATACACGCAGATGACGTTGGTGATGGTCATCCATTTTCCGGAAAAGCT
TTGAGGCATCTGTTGTTCGTTTGGATACACGGAGGTGACGTTGGTGATGG
GTGTTCCATTTCCTGGAAAAGCTTGGGGCATCTGTTGTTTGTCTGGATAC
ACGGAGGTGACGTTGGTGATGGGTCATCCATTTTTTACCTCTCTGCTATG
GAGCGCACCTTTTTTTGACGTATTTGGCTCAAGGGTTCTGATGTGTGCGT
TTTGGCAGGGGTTACGGCGATGGCGTTCAGGTTTCTGCGGTTGAGCATGA
CAGCAATCATTTTTGGTCAAAGTCTCGGAAAGTACACTTGGAAGGGTAGA
TAGATGAATGGTAGGTAGAGTTGGCGAGCAAGTGAAACCGAGCTTTTTTT
TCAACCCAGCCTTGGCTAATACAAATGAGCTTGCTTTTTCTTTCGACGAC
GACGGTGGGTCTTGATGCCAGCTTTTTACTATAGCCGAGATTTTTATTGA
TTGGCTCATCCATGCCTGAACAAGTGTGTTTGTTTTCGGATCTTCTGATG
GCTCCAGCACTACTGTGACCGCGGGAAGGTATTCTTGGGGTACAGCTAAT
AATGTGAGAAATAGCAGCAACAACAACCTACCTGATGTTGACTCTTCTCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11033:1512..3461+

>mRNA_L-elsbetiae_contig11033.934.1 ID=mRNA_L-elsbetiae_contig11033.934.1|Name=mRNA_L-elsbetiae_contig11033.934.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=816bp|location=Sequence derived from alignment at L-elsbetiae_contig11033:1512..3461+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTATTTACCCCGTTCGCTCCCACGGGGCCGCTGTGCCAACCGCCGCAA
CGCGCAAACTCGGTCCGCCTCTGCATGCAGCAAGGGGATGCTGCCGTTCG
AGGAGCGGCACAGGAAGGCTGACCGCAACCGCAAGATCTACATCGCTGTT
GCCGCTCTCGCCGTGGCTGCCGGAATCATGTACGCGGTCTCCTCCACGGA
GTACTCCGCCGCCGCCGCTGCAGCAAACCTTGACGGGGGGGCCCGTGGCG
TCGGCGGGGCATGGGAAGGGGGGGCGCTGCGCACACCCGTGCGTGCCGCG
AAGCGCGCAGCTGCGGCCGCGGCAGATTACCTGCGGCGTTGGAGATCTGG
GAGGGTGGCGATGTTGCGGGAGGGAGGAGCGTACGTTGGAACCGTTGGGA
GCCTTTAGATGTATTTACCCCGTTCGCTCCCACGGGGCCGCTGTGCCAAC
CGCCGCAACGCGCAAACTCGGTCCGCCTCTGCATGCAGCAAGGGGATGCT
GCCGTTCGAGGAGCGGCACAGGAAGGCTGACCGCAACCGCAAGATCTACA
TCGCTGTTGCCGCTCTCGCCGTGGCTGCCGGAATCATGTACGCGGTCTCC
TCCACGGAGTACTCCGCCGCCGCCGCTGCAGCAAACCTTGACGGGGGGGC
CCGTGGCGTCGGCGGGGCATGGGAAGGGGGGGCGCTGCGCACACCCGTGC
GTGCCGCGAAGCGCGCAGCTGCGGCCGCGGCAGATTACCTGCGGCGTTGG
AGATCTGGGAGGGTGGCGATGTTGCGGGAGGGAGGAGCGTACGTTGGAAC
CGTTGGGAGCCTTTAG
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