mRNA_L-elsbetiae_contig11023.926.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11023.926.1
Unique NamemRNA_L-elsbetiae_contig11023.926.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11023.926.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 222 bits (566), Expect = 1.150e-64
Identity = 111/135 (82.22%), Postives = 123/135 (91.11%), Query Frame = 1 
Query:    1 MVQWAFERGMGIEGTEGEEEFFQQGCQDTNLKLRPHQRAQTRLSTGAGGLGLSSAVMRRFSASLGNLISTLPAVIATLNGPLGESVKEKIPDTILVERMGDVIKELHQEHGVSKEVLGETVPPSWVTWALEPPGE 405
            MVQWA E GMGIEGTE EEEFFQQGCQDT+LKLRP+QRAQT+LSTGAGGLG+SSAVMRRFSASLGNLISTLP VIA+L GPLG+SVKEKIP+T LV RMGD IKEL+QEHG+++EVL   VPPSWV+WALE PGE
Sbjct:  918 MVQWALETGMGIEGTESEEEFFQQGCQDTDLKLRPYQRAQTQLSTGAGGLGVSSAVMRRFSASLGNLISTLPEVIASLTGPLGDSVKEKIPNTTLVARMGDAIKELNQEHGLTEEVLRGIVPPSWVSWALEDPGE 1052
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BLAST of mRNA_L-elsbetiae_contig11023.926.1 vs. uniprot
Match: A0A6H5JP71_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP71_9PHAE)

HSP 1 Score: 191 bits (486), Expect = 1.880e-59
Identity = 96/135 (71.11%), Postives = 107/135 (79.26%), Query Frame = 1 
Query:    1 MVQWAFERGMGIEGTEGEEEFFQQGCQDTNLKLRPHQRAQTRLSTGAGGLGLSSAVMRRFSASLGNLISTLPAVIATLNGPLGESVKEKIPDTILVERMGDVIKELHQEHGVSKEVLGETVPPSWVTWALEPPGE 405
            MV W  E  MG+  TE EEEFFQ  CQ    KL+P+Q+AQ RLSTGA GLGL +AVMRRFSASLGNL+ TLPAVIA L GPLGESV+ +IP T+LVERMGD IKEL+QEHGVS EVL   +PPSWV WALEPPGE
Sbjct:   59 MVMWVLEATMGLRDTEDEEEFFQDDCQPDRFKLKPYQQAQARLSTGARGLGLPAAVMRRFSASLGNLVGTLPAVIAALRGPLGESVRVRIPGTVLVERMGDAIKELNQEHGVSVEVLKGILPPSWVEWALEPPGE 193
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BLAST of mRNA_L-elsbetiae_contig11023.926.1 vs. uniprot
Match: A0A6H5KM33_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM33_9PHAE)

HSP 1 Score: 185 bits (470), Expect = 4.600e-57
Identity = 93/135 (68.89%), Postives = 105/135 (77.78%), Query Frame = 1 
Query:    1 MVQWAFERGMGIEGTEGEEEFFQQGCQDTNLKLRPHQRAQTRLSTGAGGLGLSSAVMRRFSASLGNLISTLPAVIATLNGPLGESVKEKIPDTILVERMGDVIKELHQEHGVSKEVLGETVPPSWVTWALEPPGE 405
            MV W  E  MG+  TE EE FFQ   Q    KL+P+Q+AQ RLSTGAGGLG  +AVMRRFSASLGNL+ TLPAVIA L GPLGESV+ +IP T+LVERMGD IKEL+QEHGVS E+L   +PPSWV WALEPPGE
Sbjct:    1 MVMWVLEATMGLRDTEDEEVFFQDNRQPDRFKLKPYQQAQARLSTGAGGLGSQAAVMRRFSASLGNLVGTLPAVIAALRGPLGESVRVRIPGTVLVERMGDAIKELNQEHGVSVEILKGILPPSWVEWALEPPGE 135
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BLAST of mRNA_L-elsbetiae_contig11023.926.1 vs. uniprot
Match: A0A6H5K2M1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M1_9PHAE)

HSP 1 Score: 192 bits (489), Expect = 1.270e-56
Identity = 96/135 (71.11%), Postives = 108/135 (80.00%), Query Frame = 1 
Query:    1 MVQWAFERGMGIEGTEGEEEFFQQGCQDTNLKLRPHQRAQTRLSTGAGGLGLSSAVMRRFSASLGNLISTLPAVIATLNGPLGESVKEKIPDTILVERMGDVIKELHQEHGVSKEVLGETVPPSWVTWALEPPGE 405
            MV W  E  MG+  TE EEEFFQ  CQ    KL+P+Q+AQ RLSTGAGGLGL +AVMRRFSASLGNL+STLPAVIA L GPLGESV+ +IP T+LVERMGD IKEL+QEHGVS E+L   +PPSWV WALEP GE
Sbjct:  231 MVMWVLEATMGLRDTEDEEEFFQDDCQPDRFKLKPYQQAQARLSTGAGGLGLPAAVMRRFSASLGNLVSTLPAVIAALRGPLGESVRVRIPGTVLVERMGDAIKELNQEHGVSVEILKGILPPSWVEWALEPTGE 365
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BLAST of mRNA_L-elsbetiae_contig11023.926.1 vs. uniprot
Match: A0A6H5K6Y9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6Y9_9PHAE)

HSP 1 Score: 187 bits (476), Expect = 1.370e-56
Identity = 93/135 (68.89%), Postives = 106/135 (78.52%), Query Frame = 1 
Query:    1 MVQWAFERGMGIEGTEGEEEFFQQGCQDTNLKLRPHQRAQTRLSTGAGGLGLSSAVMRRFSASLGNLISTLPAVIATLNGPLGESVKEKIPDTILVERMGDVIKELHQEHGVSKEVLGETVPPSWVTWALEPPGE 405
            MV W  E  MG+  TE EEEFFQ  CQ    KL+P+Q+AQ RLSTGAGGLGL +AVMRRFSASLGNL+ TLPAVIA L GPLGESV+ +IP T+LVERMGD IKEL+QEH +S E+L   +PPSWV WALEP GE
Sbjct:    1 MVMWVLEATMGLRDTEVEEEFFQDDCQPDRFKLKPYQQAQARLSTGAGGLGLPAAVMRRFSASLGNLVGTLPAVIAALRGPLGESVRVRIPGTVLVERMGDAIKELNQEHAISVEILKGILPPSWVEWALEPTGE 135
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BLAST of mRNA_L-elsbetiae_contig11023.926.1 vs. uniprot
Match: A0A6H5KTK7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTK7_9PHAE)

HSP 1 Score: 189 bits (480), Expect = 1.370e-56
Identity = 94/135 (69.63%), Postives = 107/135 (79.26%), Query Frame = 1 
Query:    1 MVQWAFERGMGIEGTEGEEEFFQQGCQDTNLKLRPHQRAQTRLSTGAGGLGLSSAVMRRFSASLGNLISTLPAVIATLNGPLGESVKEKIPDTILVERMGDVIKELHQEHGVSKEVLGETVPPSWVTWALEPPGE 405
            MV W  E  MG+  TE EEEFFQ  CQ    KL+P+Q++Q RLSTGAGGLGL +AVMRRFSASLGNL+ TLPAVIA L GPLGESV+ +IP T+LVERMGD IKEL+QEHGVS E+L   +PPSWV WALEP GE
Sbjct:    1 MVMWVLEATMGLRDTEVEEEFFQDDCQPDRFKLKPYQQSQARLSTGAGGLGLPAAVMRRFSASLGNLVGTLPAVIAALRGPLGESVRVRIPGTVLVERMGDAIKELNQEHGVSVEILKGILPPSWVEWALEPTGE 135
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BLAST of mRNA_L-elsbetiae_contig11023.926.1 vs. uniprot
Match: A0A6H5J7C4_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7C4_9PHAE)

HSP 1 Score: 187 bits (476), Expect = 3.830e-56
Identity = 93/135 (68.89%), Postives = 106/135 (78.52%), Query Frame = 1 
Query:    1 MVQWAFERGMGIEGTEGEEEFFQQGCQDTNLKLRPHQRAQTRLSTGAGGLGLSSAVMRRFSASLGNLISTLPAVIATLNGPLGESVKEKIPDTILVERMGDVIKELHQEHGVSKEVLGETVPPSWVTWALEPPGE 405
            MV W  E  MG+  TE EEEFFQ  CQ    KL+P+Q+AQ RLSTGAGGLGL +AVMRRFSASLGNL+ TLPAVIA L GPLGESV+ +IP T+LVERMGD IKEL+QEH +S E+L   +PPSWV WALEP GE
Sbjct:  195 MVMWVLEATMGLRDTEVEEEFFQDDCQPDRFKLKPYQQAQARLSTGAGGLGLPAAVMRRFSASLGNLVGTLPAVIAALRGPLGESVRVRIPGTVLVERMGDAIKELNQEHAISVEILKGILPPSWVEWALEPTGE 329
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BLAST of mRNA_L-elsbetiae_contig11023.926.1 vs. uniprot
Match: A0A6H5KAK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAK8_9PHAE)

HSP 1 Score: 192 bits (489), Expect = 5.640e-55
Identity = 96/135 (71.11%), Postives = 108/135 (80.00%), Query Frame = 1 
Query:    1 MVQWAFERGMGIEGTEGEEEFFQQGCQDTNLKLRPHQRAQTRLSTGAGGLGLSSAVMRRFSASLGNLISTLPAVIATLNGPLGESVKEKIPDTILVERMGDVIKELHQEHGVSKEVLGETVPPSWVTWALEPPGE 405
            MV W  E  MG+  TE EEEFFQ  CQ    KL+P+Q+AQ RLSTGAGGLGL +AVMRRFSASLGNL+ TLPAVIA L GPLGESV+ +IP T+LVERMGD IKEL+QEHGVS E+L  T+PPSWV WALEP GE
Sbjct:  634 MVMWVLEATMGLRDTEVEEEFFQDDCQPDRFKLKPYQQAQARLSTGAGGLGLPAAVMRRFSASLGNLVGTLPAVIAALRGPLGESVRVRIPGTVLVERMGDAIKELNQEHGVSVEILKGTLPPSWVEWALEPAGE 768
[Close]
BLAST of mRNA_L-elsbetiae_contig11023.926.1 vs. uniprot
Match: A0A6H5JQ53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ53_9PHAE)

HSP 1 Score: 187 bits (476), Expect = 7.380e-55
Identity = 94/135 (69.63%), Postives = 105/135 (77.78%), Query Frame = 1 
Query:    1 MVQWAFERGMGIEGTEGEEEFFQQGCQDTNLKLRPHQRAQTRLSTGAGGLGLSSAVMRRFSASLGNLISTLPAVIATLNGPLGESVKEKIPDTILVERMGDVIKELHQEHGVSKEVLGETVPPSWVTWALEPPGE 405
            MV W  E  MG+  TE EEEFFQ  CQ    KLRP+Q+AQ RLSTGAG LGL  AVMRRFSASLGNL+ TLPAVIA L GPLGESV+ +IP T+LVERMGD IKEL+QEHG+S E+L   +PPSWV WALEP GE
Sbjct:    1 MVMWVLEATMGLRDTEVEEEFFQDDCQPDRFKLRPYQQAQARLSTGAGELGLPEAVMRRFSASLGNLVGTLPAVIAALRGPLGESVRVRIPGTVLVERMGDAIKELNQEHGISVEILKGILPPSWVEWALEPTGE 135
[Close]
BLAST of mRNA_L-elsbetiae_contig11023.926.1 vs. uniprot
Match: A0A6H5K4V8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4V8_9PHAE)

HSP 1 Score: 184 bits (468), Expect = 1.470e-54
Identity = 91/135 (67.41%), Postives = 105/135 (77.78%), Query Frame = 1 
Query:    1 MVQWAFERGMGIEGTEGEEEFFQQGCQDTNLKLRPHQRAQTRLSTGAGGLGLSSAVMRRFSASLGNLISTLPAVIATLNGPLGESVKEKIPDTILVERMGDVIKELHQEHGVSKEVLGETVPPSWVTWALEPPGE 405
            MV W  +  MG+  TE E+EFFQ  CQ    KL+P+Q+AQ RLSTGAG LGL +AVMRRFSASL NL+ TLP VIA L GPLGESV+ +IP T+LVERMGD IKEL+QEHGVS E+L   +PPSWV WALEPPGE
Sbjct:  123 MVMWVLKTTMGLRDTEDEDEFFQDDCQPDRFKLKPYQQAQARLSTGAGRLGLPAAVMRRFSASLSNLVGTLPTVIAALRGPLGESVRVRIPGTVLVERMGDAIKELNQEHGVSVEILKGILPPSWVEWALEPPGE 257
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11023.926.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JH58_9PHAE1.150e-6482.22Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JP71_9PHAE1.880e-5971.11Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KM33_9PHAE4.600e-5768.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2M1_9PHAE1.270e-5671.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6Y9_9PHAE1.370e-5668.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTK7_9PHAE1.370e-5669.63Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J7C4_9PHAE3.830e-5668.89Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KAK8_9PHAE5.640e-5571.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQ53_9PHAE7.380e-5569.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4V8_9PHAE1.470e-5467.41Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11023contigL-elsbetiae_contig11023:5824..6228 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size405
Cds size405
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815318.5338326-CDS-L-elsbetiae_contig11023:5823..62281622815318.5338326-CDS-L-elsbetiae_contig11023:5823..6228Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11023 5824..6228 +
1691682835.6317883-CDS-L-elsbetiae_contig11023:5823..62281691682835.6317883-CDS-L-elsbetiae_contig11023:5823..6228Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11023 5824..6228 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11023.926.1prot_L-elsbetiae_contig11023.926.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11023 5824..6228 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11023.926.1

>prot_L-elsbetiae_contig11023.926.1 ID=prot_L-elsbetiae_contig11023.926.1|Name=mRNA_L-elsbetiae_contig11023.926.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=135bp
MVQWAFERGMGIEGTEGEEEFFQQGCQDTNLKLRPHQRAQTRLSTGAGGL
GLSSAVMRRFSASLGNLISTLPAVIATLNGPLGESVKEKIPDTILVERMG
DVIKELHQEHGVSKEVLGETVPPSWVTWALEPPGE
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mRNA from alignment at L-elsbetiae_contig11023:5824..6228+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11023.926.1 ID=mRNA_L-elsbetiae_contig11023.926.1|Name=mRNA_L-elsbetiae_contig11023.926.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=405bp|location=Sequence derived from alignment at L-elsbetiae_contig11023:5824..6228+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTTCAGTGGGCTTTCGAGAGAGGTATGGGGATCGAAGGTACGGAAGG
AGAGGAGGAATTCTTCCAACAAGGTTGCCAGGACACCAACCTGAAGCTCA
GGCCCCATCAAAGAGCCCAGACGCGTTTGTCAACAGGGGCAGGGGGGTTA
GGGCTATCATCGGCGGTTATGAGGAGGTTCTCAGCTTCTCTGGGGAATCT
GATCAGTACCCTGCCAGCGGTTATCGCCACCCTCAACGGACCTCTCGGAG
AATCGGTGAAAGAGAAGATACCGGACACCATATTGGTGGAAAGGATGGGG
GACGTGATCAAGGAACTTCACCAGGAGCATGGAGTGTCGAAGGAGGTTCT
AGGAGAAACCGTTCCCCCGTCATGGGTGACGTGGGCCCTTGAACCGCCAG
GAGAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11023:5824..6228+

>mRNA_L-elsbetiae_contig11023.926.1 ID=mRNA_L-elsbetiae_contig11023.926.1|Name=mRNA_L-elsbetiae_contig11023.926.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=810bp|location=Sequence derived from alignment at L-elsbetiae_contig11023:5824..6228+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTTCAGTGGGCTTTCGAGAGAGGTATGGGGATCGAAGGTACGGAAGG
AGAGGAGGAATTCTTCCAACAAGGTTGCCAGGACACCAACCTGAAGCTCA
GGCCCCATCAAAGAGCCCAGACGCGTTTGTCAACAGGGGCAGGGGGGTTA
GGGCTATCATCGGCGGTTATGAGGAGGTTCTCAGCTTCTCTGGGGAATCT
GATCAGTACCCTGCCAGCGGTTATCGCCACCCTCAACGGACCTCTCGGAG
AATCGGTGAAAGAGAAGATACCGGACACCATATTGGTGGAAAGGATGGGG
GACGTGATCAAGGAACTTCACCAGGAGCATGGAGTGTCGAAGGAGGTTCT
AGGAGAAACCGTTCCCCCGTCATGGGTGACGTGGGCCCTTGAACCGCCAG
GAGAAATGGTTCAGTGGGCTTTCGAGAGAGGTATGGGGATCGAAGGTACG
GAAGGAGAGGAGGAATTCTTCCAACAAGGTTGCCAGGACACCAACCTGAA
GCTCAGGCCCCATCAAAGAGCCCAGACGCGTTTGTCAACAGGGGCAGGGG
GGTTAGGGCTATCATCGGCGGTTATGAGGAGGTTCTCAGCTTCTCTGGGG
AATCTGATCAGTACCCTGCCAGCGGTTATCGCCACCCTCAACGGACCTCT
CGGAGAATCGGTGAAAGAGAAGATACCGGACACCATATTGGTGGAAAGGA
TGGGGGACGTGATCAAGGAACTTCACCAGGAGCATGGAGTGTCGAAGGAG
GTTCTAGGAGAAACCGTTCCCCCGTCATGGGTGACGTGGGCCCTTGAACC
GCCAGGAGAA
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