mRNA_L-elsbetiae_contig1101.917.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1101.917.1 vs. uniprot
Match: D8LS05_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS05_ECTSI) HSP 1 Score: 160 bits (405), Expect = 7.020e-45 Identity = 91/106 (85.85%), Postives = 97/106 (91.51%), Query Frame = 1 Query: 73 MMAKAGVGAG-GKKGXXXXXXXXXXXKDNKGEHGLGVTPINYLKDGKDPSIMPDEDYPDWLWNMQLPSLARLKRTKEEDYTLDEFRRFVQLDSREKIKRQNRSGKF 387 MMAKAG A G XXXXXXXXXX KD+ GEHGLGVTPIN+LKDGKDPS+MPDE+YP+WLWNMQLPSLARLKRTKE+DYTLDEFRRFVQLDSREKIKRQNRSGKF Sbjct: 1 MMAKAGASAASGXXXXXXXXXXXXXAKDSAGEHGLGVTPINFLKDGKDPSVMPDEEYPEWLWNMQLPSLARLKRTKEDDYTLDEFRRFVQLDSREKIKRQNRSGKF 106
BLAST of mRNA_L-elsbetiae_contig1101.917.1 vs. uniprot
Match: A0A6H5JCL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCL9_9PHAE) HSP 1 Score: 160 bits (405), Expect = 2.460e-44 Identity = 93/110 (84.55%), Postives = 98/110 (89.09%), Query Frame = 1 Query: 58 IVARGMMAKAGVGAGGKKGXXXXXXXXXXXKDNKGEHGLGVTPINYLKDGKDPSIMPDEDYPDWLWNMQLPSLARLKRTKEEDYTLDEFRRFVQLDSREKIKRQNRSGKF 387 + ARGMMAKAG A GXXXXXXXXXXX GEHGLGVTPIN+LKDGKDPS+MPDE+YP+WLWNMQLPSLARLKR KEEDYTLDEFRRFVQLDSREKIKRQNRSGKF Sbjct: 38 VSARGMMAKAGASAA-SGGXXXXXXXXXXXXXXAGEHGLGVTPINFLKDGKDPSVMPDEEYPEWLWNMQLPSLARLKRKKEEDYTLDEFRRFVQLDSREKIKRQNRSGKF 146
BLAST of mRNA_L-elsbetiae_contig1101.917.1 vs. uniprot
Match: A0A6J0NPD7_RAPSA (uncharacterized protein LOC108857114 n=1 Tax=Raphanus sativus TaxID=3726 RepID=A0A6J0NPD7_RAPSA) HSP 1 Score: 76.3 bits (186), Expect = 3.270e-13 Identity = 47/112 (41.96%), Postives = 60/112 (53.57%), Query Frame = 1 Query: 46 GGPYIVARGMMAKAGVGA-GGKKGXXXXXXXXXXXKDNKGEHGLGVTPINYLKDGKDPSIMPDEDYPDWLWNMQ--LPSLARLKRTKEEDYTLDEFRRFVQLDSREKIKRQN 372 G Y+V R + A AG GGK G K+ K +G N LKDG DP I+PD DYPDWLW + P+L+ L+R E D+ +RFV+LD+R KIK N Sbjct: 11 GSKYVVRRTLAAAAGKAKKGGKGGGSDAPKGSSLSKEIKSTTVVGA---NTLKDGSDPKILPDSDYPDWLWRLLHIRPALSELRRKNVETLPYDDLKRFVKLDTRSKIKENN 119
BLAST of mRNA_L-elsbetiae_contig1101.917.1 vs. uniprot
Match: A0A8B8ZE54_PHODC (uncharacterized protein LOC103718685 n=1 Tax=Phoenix dactylifera TaxID=42345 RepID=A0A8B8ZE54_PHODC) HSP 1 Score: 74.3 bits (181), Expect = 1.880e-12 Identity = 37/64 (57.81%), Postives = 46/64 (71.88%), Query Frame = 1 Query: 190 NYLKDGKDPSIMPDEDYPDWLWNM---QLPSLARLKRTKEEDYTLDEFRRFVQLDSREKIKRQN 372 N LKDG DP IMPD DYPDWLW++ +LP L+ L+R E TLD+ RRFV+LD+R +IK N Sbjct: 64 NILKDGADPKIMPDSDYPDWLWHLLDKRLP-LSELRREGTETLTLDDLRRFVKLDNRARIKENN 126
BLAST of mRNA_L-elsbetiae_contig1101.917.1 vs. uniprot
Match: Q9S799_ARATH (F28J7.7 protein n=11 Tax=Brassicaceae TaxID=3700 RepID=Q9S799_ARATH) HSP 1 Score: 72.8 bits (177), Expect = 5.670e-12 Identity = 34/67 (50.75%), Postives = 45/67 (67.16%), Query Frame = 1 Query: 178 VTPINYLKDGKDPSIMPDEDYPDWLWNM--QLPSLARLKRTKEEDYTLDEFRRFVQLDSREKIKRQN 372 V N LKDG DP I+PD DYPDWLW++ + P+L+ L+R E D+ +RFV+LD+R KIK N Sbjct: 54 VVGANTLKDGSDPKILPDSDYPDWLWHLLDKRPALSELRRKNVETLPYDDLKRFVKLDTRGKIKENN 120
BLAST of mRNA_L-elsbetiae_contig1101.917.1 vs. uniprot
Match: A0A6I9RSS1_ELAGV (54S ribosomal protein L37, mitochondrial n=3 Tax=Cocoseae TaxID=169705 RepID=A0A6I9RSS1_ELAGV) HSP 1 Score: 72.8 bits (177), Expect = 6.750e-12 Identity = 33/63 (52.38%), Postives = 44/63 (69.84%), Query Frame = 1 Query: 190 NYLKDGKDPSIMPDEDYPDWLWNM--QLPSLARLKRTKEEDYTLDEFRRFVQLDSREKIKRQN 372 N LKDG DP IMPD DYPDWLW++ + P L+ L+R E + D+ +RFV+LD+R +IK N Sbjct: 65 NILKDGADPKIMPDSDYPDWLWHLLDKRPPLSELRRKDTETLSFDDLKRFVKLDNRARIKENN 127
BLAST of mRNA_L-elsbetiae_contig1101.917.1 vs. uniprot
Match: A0A6A6MX44_HEVBR (Uncharacterized protein n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=A0A6A6MX44_HEVBR) HSP 1 Score: 70.5 bits (171), Expect = 1.060e-11 Identity = 32/69 (46.38%), Postives = 47/69 (68.12%), Query Frame = 1 Query: 172 LGVTPINYLKDGKDPSIMPDEDYPDWLWNM--QLPSLARLKRTKEEDYTLDEFRRFVQLDSREKIKRQN 372 + V N LKDG DP I+PD +YPDWLW++ + P+L+ L+R K E ++ +RFV+LD+R +IK N Sbjct: 4 IEVVGANILKDGADPKILPDSEYPDWLWHLLDKRPALSALRREKIETLPYEDLKRFVKLDNRARIKENN 72
BLAST of mRNA_L-elsbetiae_contig1101.917.1 vs. uniprot
Match: A0A4D8Y8A9_SALSN (Large subunit ribosomal protein L54 n=6 Tax=Salvia TaxID=21880 RepID=A0A4D8Y8A9_SALSN) HSP 1 Score: 72.0 bits (175), Expect = 1.230e-11 Identity = 32/63 (50.79%), Postives = 45/63 (71.43%), Query Frame = 1 Query: 190 NYLKDGKDPSIMPDEDYPDWLWNM--QLPSLARLKRTKEEDYTLDEFRRFVQLDSREKIKRQN 372 N LKDG+DP I+PD +YPDWLW++ + P+L+ L+R E DE +RFV+LD+R +IK N Sbjct: 64 NILKDGQDPKILPDSEYPDWLWHLLDKRPALSELRRKDTETLPFDELKRFVKLDNRARIKENN 126
BLAST of mRNA_L-elsbetiae_contig1101.917.1 vs. uniprot
Match: A0A1U8ATG0_NELNU (54S ribosomal protein L37, mitochondrial-like n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U8ATG0_NELNU) HSP 1 Score: 71.2 bits (173), Expect = 2.300e-11 Identity = 33/67 (49.25%), Postives = 45/67 (67.16%), Query Frame = 1 Query: 178 VTPINYLKDGKDPSIMPDEDYPDWLWNM--QLPSLARLKRTKEEDYTLDEFRRFVQLDSREKIKRQN 372 V N LKDG DP I+PD +YPDWLW++ + P+L+ L+R E DE +RFV+LD+R +IK N Sbjct: 60 VVGANILKDGADPKILPDSEYPDWLWHLLDKKPALSELRRKNIETLPYDELKRFVKLDNRARIKENN 126
BLAST of mRNA_L-elsbetiae_contig1101.917.1 vs. uniprot
Match: A0A565B585_9BRAS (Uncharacterized protein n=1 Tax=Arabis nemorensis TaxID=586526 RepID=A0A565B585_9BRAS) HSP 1 Score: 70.9 bits (172), Expect = 2.710e-11 Identity = 34/67 (50.75%), Postives = 43/67 (64.18%), Query Frame = 1 Query: 178 VTPINYLKDGKDPSIMPDEDYPDWLWNM--QLPSLARLKRTKEEDYTLDEFRRFVQLDSREKIKRQN 372 V N LKDG DP I+ D DYPDWLW++ P+L+ LKR E D+ +RFV+LD+R KIK N Sbjct: 54 VVGANTLKDGSDPKILSDSDYPDWLWHLLDNRPALSELKRKNVETLPYDDLKRFVKLDTRAKIKENN 120 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1101.917.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1101.917.1 >prot_L-elsbetiae_contig1101.917.1 ID=prot_L-elsbetiae_contig1101.917.1|Name=mRNA_L-elsbetiae_contig1101.917.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=106bp MMAKAGVGAGGKKGGKGGGGGGGDAKDNKGEHGLGVTPINYLKDGKDPSIback to top mRNA from alignment at L-elsbetiae_contig1101:14321..16872+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1101.917.1 ID=mRNA_L-elsbetiae_contig1101.917.1|Name=mRNA_L-elsbetiae_contig1101.917.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2552bp|location=Sequence derived from alignment at L-elsbetiae_contig1101:14321..16872+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1101:14321..16872+ >mRNA_L-elsbetiae_contig1101.917.1 ID=mRNA_L-elsbetiae_contig1101.917.1|Name=mRNA_L-elsbetiae_contig1101.917.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=636bp|location=Sequence derived from alignment at L-elsbetiae_contig1101:14321..16872+ (Laminarionema elsbetiae ELsaHSoW15)back to top |