prot_L-elsbetiae_contig10044.91.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig10044.91.1
Unique Nameprot_L-elsbetiae_contig10044.91.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length184
Homology
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BLAST of mRNA_L-elsbetiae_contig10044.91.1 vs. uniprot
Match: A0A6H5JM22_9PHAE (PPR_long domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM22_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 4.730e-16
Identity = 132/148 (89.19%), Postives = 139/148 (93.92%), Query Frame = 0 
Query:    1 WRLIEPTAYNTILAALSRAGKWEEAVLLMKEMETREVPRDAYSYACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREMEVVDGLPGXXXXXXXXXXXXXXXXXXXXXXXXXVKMRKVGIKPNEI 148
            W ++E  AYNTILAALSRAGKWEEAVLL+KEMETR + RDA SYACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +MEVVDGLP XXXXXXXXXXXXXXXXXXXXXXXXX KM+KVGIKPNE+
Sbjct:  262 WPVVEQKAYNTILAALSRAGKWEEAVLLLKEMETRGIQRDAVSYACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMEVVDGLPXXXXXXXXXXXXXXXXXXXXXXXXXXAKMQKVGIKPNEV 409
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BLAST of mRNA_L-elsbetiae_contig10044.91.1 vs. uniprot
Match: D7FWB8_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWB8_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 9.770e-15
Identity = 130/148 (87.84%), Postives = 138/148 (93.24%), Query Frame = 0 
Query:    1 WRLIEPTAYNTILAALSRAGKWEEAVLLMKEMETREVPRDAYSYACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREMEVVDGLPGXXXXXXXXXXXXXXXXXXXXXXXXXVKMRKVGIKPNEI 148
            W ++E  AYNTILAALSRAGKWEEAVLL+KEMETR + RDA SYA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +MEVVDGLP XXXXXXXXXXXXXXXXXXXXXXXXX KM+KVG+KPNE+
Sbjct:   53 WLIVEQKAYNTILAALSRAGKWEEAVLLLKEMETRGIQRDAVSYAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMEVVDGLPXXXXXXXXXXXXXXXXXXXXXXXXXXAKMQKVGVKPNEV 200
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10044.91.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JM22_9PHAE4.730e-1689.19PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
D7FWB8_ECTSI9.770e-1587.84PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 106..183
e-value: 5.9E-20
score: 74.0
coord: 4..105
e-value: 1.2E-25
score: 92.7
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 8..173
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 149..181
e-value: 3.4E-5
score: 21.7
coord: 113..147
e-value: 1.8E-7
score: 28.9
coord: 8..40
e-value: 2.3E-7
score: 28.6
coord: 78..103
e-value: 4.0E-5
score: 21.5
coord: 42..75
e-value: 4.0E-5
score: 21.5
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 75..109
score: 9.262
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 146..180
score: 11.356
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 5..39
score: 10.654
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 40..74
score: 9.821
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 111..145
score: 11.433
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 12..172
e-value: 4.3E-10
score: 39.3
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 8..181

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10044contigL-elsbetiae_contig10044:308..6302 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10044.91.1mRNA_L-elsbetiae_contig10044.91.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig10044 308..6302 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig10044.91.1 ID=prot_L-elsbetiae_contig10044.91.1|Name=mRNA_L-elsbetiae_contig10044.91.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=184bp
WRLIEPTAYNTILAALSRAGKWEEAVLLMKEMETREVPRDAYSYACLIAA
CGRGMQWKKALSSLVEMREAGIEANSFVYSAAIDACAKGRQWRKALVLLR
EMEVVDGLPGNLICYNAAADACSKAGRPGEALALLVKMRKVGIKPNEISY
LSAISACSRVGDWQQALWLLDEMMVFGVQPDHK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat
IPR033443PPR_long