mRNA_L-elsbetiae_contig11007.911.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11007.911.1
Unique NamemRNA_L-elsbetiae_contig11007.911.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11007.911.1 vs. uniprot
Match: D8LMR2_ECTSI (Molybdopterin synthase sulfur carrier subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMR2_ECTSI)

HSP 1 Score: 146 bits (368), Expect = 1.940e-38
Identity = 76/90 (84.44%), Postives = 81/90 (90.00%), Query Frame = 1 
Query:   16 VPSSHSTQVKVLFFASCREMAGIKETSLELPGNSSSIAKLREQIVVMLPGLKPVAETVTLALNQEYLDPEQDAALKDGDEVAFIPPISGG 285
            V SS + QVKVLFFASCREMAG KETSLELPG+SSSIA+LRE IV  LPGL+PVA TVTLALNQEYLDPEQDA LK+GDEVAFIPPISGG
Sbjct:   17 VKSSPAQQVKVLFFASCREMAGTKETSLELPGDSSSIAQLREHIVEKLPGLQPVAATVTLALNQEYLDPEQDATLKEGDEVAFIPPISGG 106
[Close]
BLAST of mRNA_L-elsbetiae_contig11007.911.1 vs. uniprot
Match: A0A6H5JNY5_9PHAE (Molybdopterin synthase sulfur carrier subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNY5_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 3.710e-37
Identity = 72/83 (86.75%), Postives = 77/83 (92.77%), Query Frame = 1 
Query:   37 QVKVLFFASCREMAGIKETSLELPGNSSSIAKLREQIVVMLPGLKPVAETVTLALNQEYLDPEQDAALKDGDEVAFIPPISGG 285
            +VKVLFFASCREMAG KETSLELPG+SSSIA+LRE IV  LPGL+PVA TVTLALNQEYLDPEQDA LK+GDEVAFIPPISGG
Sbjct:    2 KVKVLFFASCREMAGTKETSLELPGDSSSIAQLREHIVKKLPGLQPVAATVTLALNQEYLDPEQDAPLKEGDEVAFIPPISGG 84
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BLAST of mRNA_L-elsbetiae_contig11007.911.1 vs. uniprot
Match: A0A835YXW6_9STRA (Molybdopterin synthase sulfur carrier subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXW6_9STRA)

HSP 1 Score: 103 bits (257), Expect = 3.610e-23
Identity = 51/83 (61.45%), Postives = 64/83 (77.11%), Query Frame = 1 
Query:   37 QVKVLFFASCREMAGIKETSLELPGNSSSIAKLREQIVVMLPGLKPVAETVTLALNQEYLDPEQDAALKDGDEVAFIPPISGG 285
            +VKVLFFASCRE+AG KE ++ L G  +S   LR+++V +LP L+PVA  +TLA+N EY DP Q+  LKDGDEVA IPPISGG
Sbjct:    2 KVKVLFFASCRELAGTKEIAVTLEGAENSTEALRKKLVELLPALEPVAWGITLAVNHEYTDPGQNVQLKDGDEVALIPPISGG 84
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BLAST of mRNA_L-elsbetiae_contig11007.911.1 vs. uniprot
Match: A0A150H0I6_GONPE (Molybdopterin synthase sulfur carrier subunit n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150H0I6_GONPE)

HSP 1 Score: 85.5 bits (210), Expect = 8.890e-17
Identity = 45/83 (54.22%), Postives = 56/83 (67.47%), Query Frame = 1 
Query:   37 QVKVLFFASCREMAGIKETSLELPGNSSSIAKLREQIVVMLPGLKPVAETVTLALNQEYLDPEQDAALKDGDEVAFIPPISGG 285
            Q+KVL+FA  RE+AGI E +  LP  + + A L + I+   P L+ V +T   ALNQEYL PE   ALKDGDEVA IPP+SGG
Sbjct:    2 QIKVLYFAKSREVAGIAEQAFNLPDGADT-ADLLQHIISSHPALESVMKTCVFALNQEYLRPEDKEALKDGDEVAVIPPLSGG 83
[Close]
BLAST of mRNA_L-elsbetiae_contig11007.911.1 vs. uniprot
Match: MOC2A_CHLRE (Molybdopterin synthase sulfur carrier subunit n=3 Tax=Chlamydomonas TaxID=3052 RepID=MOC2A_CHLRE)

HSP 1 Score: 83.6 bits (205), Expect = 4.240e-16
Identity = 43/83 (51.81%), Postives = 55/83 (66.27%), Query Frame = 1 
Query:   37 QVKVLFFASCREMAGIKETSLELPGNSSSIAKLREQIVVMLPGLKPVAETVTLALNQEYLDPEQDAALKDGDEVAFIPPISGG 285
            Q+KVL+FA  RE+AG+ E + EL G+ +    L  QI+   P L  V +T   ALNQEY+ P+   ALKDGDEVA IPP+SGG
Sbjct:    2 QIKVLYFAKSREVAGVNEQTFEL-GDGAHTEDLLAQIIAAHPALDSVMKTCVFALNQEYVRPQDKEALKDGDEVAIIPPLSGG 83
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BLAST of mRNA_L-elsbetiae_contig11007.911.1 vs. uniprot
Match: L8H968_ACACA (Molybdopterin synthase sulfur carrier subunit n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H968_ACACA)

HSP 1 Score: 79.7 bits (195), Expect = 9.590e-15
Identity = 39/83 (46.99%), Postives = 55/83 (66.27%), Query Frame = 1 
Query:   37 QVKVLFFASCREMAGIKETSLELPGNSSSIAKLREQIVVMLPGLKPVAETVTLALNQEYLDPEQDAALKDGDEVAFIPPISGG 285
            +VK LFFA+ R++ G++E  L     + + A L   ++   PGL P+ ++  LA+NQEY+DPE    LKDGDE+A IPPISGG
Sbjct:    2 RVKCLFFAASRDVTGVQEKELTYADGTKTDA-LIANLIEQFPGLGPIFQSAVLAVNQEYIDPESPIELKDGDEIAVIPPISGG 83
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BLAST of mRNA_L-elsbetiae_contig11007.911.1 vs. uniprot
Match: A0A6A3EY87_9STRA (Molybdopterin synthase sulfur carrier subunit n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3EY87_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 9.450e-14
Identity = 41/83 (49.40%), Postives = 55/83 (66.27%), Query Frame = 1 
Query:   37 QVKVLFFASCREMAGIKETSLELPGNSSSIAKLREQIVVMLPGLKPVAETVTLALNQEYLDPEQDAALKDGDEVAFIPPISGG 285
            ++KVL+FAS RE  G++E  L LP +S+++ +LR  ++   P      E++TLA N EY D   D AL DGDEVA IPPISGG
Sbjct:    4 EIKVLYFASAREEVGLREEKLTLPRSSATLRELRRVLMDKHPQAAATIESITLARNLEYSD--DDVALADGDEVALIPPISGG 84
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BLAST of mRNA_L-elsbetiae_contig11007.911.1 vs. uniprot
Match: G5A3S1_PHYSP (Molybdopterin synthase sulfur carrier subunit n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5A3S1_PHYSP)

HSP 1 Score: 77.0 bits (188), Expect = 9.500e-14
Identity = 44/87 (50.57%), Postives = 56/87 (64.37%), Query Frame = 1 
Query:   37 QVKVLFFASCREMAGIKETSLELP----GNSSSIAKLREQIVVMLPGLKPVAETVTLALNQEYLDPEQDAALKDGDEVAFIPPISGG 285
            +VKVL+FAS RE  G++E  L+LP     NS+++A LR  +V   P      E++TLA N EY   E D+ L DGDEVA IPPISGG
Sbjct:    3 EVKVLYFASAREEIGLREEKLQLPVDGDKNSATLASLRRVLVDKYPHAAATIESITLARNLEYS--EDDSPLDDGDEVALIPPISGG 87
[Close]
BLAST of mRNA_L-elsbetiae_contig11007.911.1 vs. uniprot
Match: A0A7J7QQ03_9CHLO (Molybdopterin synthase sulfur carrier subunit n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QQ03_9CHLO)

HSP 1 Score: 76.6 bits (187), Expect = 1.160e-13
Identity = 39/83 (46.99%), Postives = 54/83 (65.06%), Query Frame = 1 
Query:   37 QVKVLFFASCREMAGIKETSLELPGNSSSIAKLREQIVVMLPGLKPVAETVTLALNQEYLDPEQDAALKDGDEVAFIPPISGG 285
            +V VL+FA  RE+ G  +  LE+   S++  KL EQ++   PGL+ V +    A+NQEY+ P Q   LKDGDE+A IPP+SGG
Sbjct:    2 KVNVLYFAISREVVGKSQEELEVEDGSTT-HKLLEQLLASYPGLQSVMKACVFAVNQEYVPPSQALTLKDGDEIAIIPPLSGG 83
[Close]
BLAST of mRNA_L-elsbetiae_contig11007.911.1 vs. uniprot
Match: A0A6A3NHS8_9STRA (Molybdopterin synthase sulfur carrier subunit n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3NHS8_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 2.360e-13
Identity = 40/83 (48.19%), Postives = 53/83 (63.86%), Query Frame = 1 
Query:   37 QVKVLFFASCREMAGIKETSLELPGNSSSIAKLREQIVVMLPGLKPVAETVTLALNQEYLDPEQDAALKDGDEVAFIPPISGG 285
            ++KVL+FAS RE  G++E  L LP + +++  LR  ++   P      E++TLA N EY   E D AL DGDEVA IPPISGG
Sbjct:    4 EIKVLYFASAREEVGLREEKLTLPRSCTTLGDLRHALMDKHPQAAATIESITLARNLEYS--EDDVALADGDEVALIPPISGG 84
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11007.911.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMR2_ECTSI1.940e-3884.44Molybdopterin synthase sulfur carrier subunit n=1 ... [more]
A0A6H5JNY5_9PHAE3.710e-3786.75Molybdopterin synthase sulfur carrier subunit n=1 ... [more]
A0A835YXW6_9STRA3.610e-2361.45Molybdopterin synthase sulfur carrier subunit n=1 ... [more]
A0A150H0I6_GONPE8.890e-1754.22Molybdopterin synthase sulfur carrier subunit n=1 ... [more]
MOC2A_CHLRE4.240e-1651.81Molybdopterin synthase sulfur carrier subunit n=3 ... [more]
L8H968_ACACA9.590e-1546.99Molybdopterin synthase sulfur carrier subunit n=1 ... [more]
A0A6A3EY87_9STRA9.450e-1449.40Molybdopterin synthase sulfur carrier subunit n=1 ... [more]
G5A3S1_PHYSP9.500e-1450.57Molybdopterin synthase sulfur carrier subunit n=1 ... [more]
A0A7J7QQ03_9CHLO1.160e-1346.99Molybdopterin synthase sulfur carrier subunit n=1 ... [more]
A0A6A3NHS8_9STRA2.360e-1348.19Molybdopterin synthase sulfur carrier subunit n=2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11007contigL-elsbetiae_contig11007:2055..3733 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score122.5
Seed ortholog evalue8.2e-26
Seed eggNOG ortholog2880.D8LMR2
Preferred nameMOCS2
KEGG rclassRC02507
KEGG koko:K03635,ko:K21232
KEGG ReactionR09395
KEGG Pathwayko00790,ko01100,ko04122,map00790,map01100,map04122
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006732,GO:0006777,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009719,GO:0009725,GO:0009733,GO:0009734,GO:0009755,GO:0009987,GO:0010033,GO:0018130,GO:0018315,GO:0019538,GO:0019637,GO:0019720,GO:0023052,GO:0032870,GO:0036211,GO:0042040,GO:0042221,GO:0043170,GO:0043412,GO:0043545,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051186,GO:0051188,GO:0051189,GO:0051716,GO:0065007,GO:0070887,GO:0071310,GO:0071365,GO:0071495,GO:0071704,GO:0090407,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.Mo-molybdopterin cofactor metabolic process
EggNOG OGsKOG3474@1,KOG3474@2759
EC2.8.1.12
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size1679
Cds size216
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11007.911.1prot_L-elsbetiae_contig11007.911.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11007 2127..2342 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815316.898923-UTR-L-elsbetiae_contig11007:2054..21261622815316.898923-UTR-L-elsbetiae_contig11007:2054..2126Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11007 2055..2126 +
1691682834.5352466-UTR-L-elsbetiae_contig11007:2054..21261691682834.5352466-UTR-L-elsbetiae_contig11007:2054..2126Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11007 2055..2126 +
1622815316.92258-UTR-L-elsbetiae_contig11007:2342..37331622815316.92258-UTR-L-elsbetiae_contig11007:2342..3733Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11007 2343..3733 +
1691682834.5571175-UTR-L-elsbetiae_contig11007:2342..37331691682834.5571175-UTR-L-elsbetiae_contig11007:2342..3733Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11007 2343..3733 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815316.9112518-CDS-L-elsbetiae_contig11007:2126..23421622815316.9112518-CDS-L-elsbetiae_contig11007:2126..2342Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11007 2127..2342 +
1691682834.547552-CDS-L-elsbetiae_contig11007:2126..23421691682834.547552-CDS-L-elsbetiae_contig11007:2126..2342Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11007 2127..2342 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11007.911.1

>prot_L-elsbetiae_contig11007.911.1 ID=prot_L-elsbetiae_contig11007.911.1|Name=mRNA_L-elsbetiae_contig11007.911.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=72bp
MAGIKETSLELPGNSSSIAKLREQIVVMLPGLKPVAETVTLALNQEYLDP
EQDAALKDGDEVAFIPPISGG*
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mRNA from alignment at L-elsbetiae_contig11007:2055..3733+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11007.911.1 ID=mRNA_L-elsbetiae_contig11007.911.1|Name=mRNA_L-elsbetiae_contig11007.911.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1679bp|location=Sequence derived from alignment at L-elsbetiae_contig11007:2055..3733+ (Laminarionema elsbetiae ELsaHSoW15)
TCAAACGAAACCAATGTGCCTTCGTCGCACTCAACTCAGGTCAAAGTTCT
CTTCTTCGCATCGTGCCGGGAGATGGCGGGAATCAAGGAGACTTCTCTCG
AGTTACCCGGAAACAGCTCCTCCATCGCCAAGCTCAGGGAACAAATCGTC
GTGATGTTGCCGGGCCTGAAGCCGGTGGCGGAGACGGTGACTCTTGCGCT
GAACCAGGAGTACCTGGACCCGGAACAAGATGCGGCCCTCAAAGACGGCG
ACGAAGTCGCCTTCATTCCGCCGATAAGCGGCGGGTAAAGTGCCCCCTTC
GTGTTTCCCATTTTCGCGCATGGCATGGAGTAGTACCCGTACATATGACC
TCTCATATAGCGGGTGGCGGGGTGTGGTGTGGTGCTGGTCGAGTGGCCGC
CAGTCCTTTTTTCAGTTCAGTGCCTTCGTTGGTGCATCTGCTGCGGATGC
TGGTGGCGCTGATCTCGCCGCCCTGGAGGCTTATCACGTTACGTTGTTTC
ATAGATGTACCGTTAGGGCTGGTGCTGCGAATATATTCGAGGAGTGCAGC
GAGCGCCTGGTAGTGCTGCTGGAACTGCAAGAGCTCCCACGCGCATTTCA
CCTCGGAAACTCGGCGAGCACATTCTTTGTTTCTGCTCTTGTCGCCCGCT
CTTAGCAGTAGGTGGGGGCGGGAGGAGGTGTAATCCTTAACCTTACATAC
GTGGTATATTCGGGGTTTCATAAGCCGTCTTTACGTTGGTGCGGGTTGGA
TTGTACCGTTCTCTCCTCGGTTGCGGAATCTTGTGTTCATTTCCCTCGCT
GAGGTAGGTGCACTTGGTGCTCGTTCCATGGCGTTTTGTCTGTGCGTTGT
AGCGTACGGTTTGTTCACTTCGGCAATGCGTTCAGACCGGTATCGATAAT
TCGGTGCGTTTTGCTTTTCCTTTAAGGTGGTGACGGGCTGTTTGTTTGCT
CCAGTAGAGTTGATAAACTTTGTCGGATGGATTTGGAAGGTTCCAGTTGT
CCACTCATGGCGATTACGGTACTTGTGCCTGCCCCCAAAACTGCTAGTCG
CGACAAGTTAGGCGCTAGCATATTTAAGTATGTTTTCATCTGCGCGGGAA
AAGAGAACGGCATTCTTGGATGTGAAGTTTTCTGCCTGTTGTAGGAAGGG
GTCTAGACATATTTGAAATAAGGGTAACACGATTTTGAAATTGGTGAGGT
TTGTGTGTGTTTCAGGATACAAAGCCGATGTTTTACCTTGCCACATGTCA
GTGTTTCGCTGGTATTGCTTAACTACGAATGATGGTTCATTTTTTTTCCT
CGTGCGTCTGAAGCCAGAATTCACGTGTTGTACGACTGATTCAAGAACAC
AGGACAAAGAAAGTTCTGAAGAAAGTTACCCTTGACCGCAATTACCGAAG
CTGTGGCAGGGAGACTCGATGAGGTACTTGCGAGCGCCCACGTATGAGCT
GAACTTGGGTGTGTGGTGTGAGAGCTATACAGGGCGAATTGTCCACATGG
GCTTGTTTGATTACGAACAGAACAGGGTAAAGTTGCTTATGTTTGGCCCC
TTGCTTCCGTAGAGCTTCCTCGCCTCTATGACCAATGGCAGTCGCACAAG
CAGAGCGGTGTACTAGCGCGGAGTAGTAGGGCAGAGAGAGGGAGAGAGGG
AAGAAGCGCACAACGATGAGCTCGGCGGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11007:2055..3733+

>mRNA_L-elsbetiae_contig11007.911.1 ID=mRNA_L-elsbetiae_contig11007.911.1|Name=mRNA_L-elsbetiae_contig11007.911.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=432bp|location=Sequence derived from alignment at L-elsbetiae_contig11007:2055..3733+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGGGAATCAAGGAGACTTCTCTCGAGTTACCCGGAAACAGCTCCTC
CATCGCCAAGCTCAGGGAACAAATCGTCGTGATGTTGCCGGGCCTGAAGC
CGGTGGCGGAGACGGTGACTCTTGCGCTGAACCAGGAGTACCTGGACCCG
GAACAAGATGCGGCCCTCAAAGACGGCGACGAAGTCGCCTTCATTCCGCC
GATAAGCGGCGGGTAAATGGCGGGAATCAAGGAGACTTCTCTCGAGTTAC
CCGGAAACAGCTCCTCCATCGCCAAGCTCAGGGAACAAATCGTCGTGATG
TTGCCGGGCCTGAAGCCGGTGGCGGAGACGGTGACTCTTGCGCTGAACCA
GGAGTACCTGGACCCGGAACAAGATGCGGCCCTCAAAGACGGCGACGAAG
TCGCCTTCATTCCGCCGATAAGCGGCGGGTAA
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