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Homology
BLAST of mRNA_L-elsbetiae_contig10044.91.1 vs. uniprot
Match: A0A6H5JM22_9PHAE (PPR_long domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM22_9PHAE) HSP 1 Score: 85.5 bits (210), Expect = 4.730e-16 Identity = 132/148 (89.19%), Postives = 139/148 (93.92%), Query Frame = 1
Query: 1 WRLIEPTAYNTILAALSRAGKWEEAVLLMKEMETREVPRDAYSYACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREMEVVDGLPGXXXXXXXXXXXXXXXXXXXXXXXXXVKMRKVGIKPNEI 444
W ++E AYNTILAALSRAGKWEEAVLL+KEMETR + RDA SYACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +MEVVDGLP XXXXXXXXXXXXXXXXXXXXXXXXX KM+KVGIKPNE+
Sbjct: 262 WPVVEQKAYNTILAALSRAGKWEEAVLLLKEMETRGIQRDAVSYACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMEVVDGLPXXXXXXXXXXXXXXXXXXXXXXXXXXAKMQKVGIKPNEV 409
BLAST of mRNA_L-elsbetiae_contig10044.91.1 vs. uniprot
Match: D7FWB8_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWB8_ECTSI) HSP 1 Score: 81.6 bits (200), Expect = 9.770e-15 Identity = 130/148 (87.84%), Postives = 138/148 (93.24%), Query Frame = 1
Query: 1 WRLIEPTAYNTILAALSRAGKWEEAVLLMKEMETREVPRDAYSYACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREMEVVDGLPGXXXXXXXXXXXXXXXXXXXXXXXXXVKMRKVGIKPNEI 444
W ++E AYNTILAALSRAGKWEEAVLL+KEMETR + RDA SYA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +MEVVDGLP XXXXXXXXXXXXXXXXXXXXXXXXX KM+KVG+KPNE+
Sbjct: 53 WLIVEQKAYNTILAALSRAGKWEEAVLLLKEMETRGIQRDAVSYAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDMEVVDGLPXXXXXXXXXXXXXXXXXXXXXXXXXXAKMQKVGVKPNEV 200
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Seed ortholog score | 82.0 |
Seed ortholog evalue | 3.1e-13 |
Seed eggNOG ortholog | 2880.D7FWB8 |
Hectar predicted targeting category | other localisation |
EggNOG free text desc. | endonuclease activity |
EggNOG OGs | KOG4197@1,KOG4197@2759 |
COG Functional cat. | S |
Best tax level | Eukaryota |
Best eggNOG OG | NA|NA|NA |
Ec32 ortholog description | Pentatricopeptide repeat |
Ec32 ortholog | Ec-25_003790.1 |
Exons | 4 |
Model size | 552 |
Cds size | 552 |
Stop | 1 |
Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815237.606225-CDS-L-elsbetiae_contig10044:307..456 | 1622815237.606225-CDS-L-elsbetiae_contig10044:307..456 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10044 308..456 + |
1691682788.3212037-CDS-L-elsbetiae_contig10044:307..456 | 1691682788.3212037-CDS-L-elsbetiae_contig10044:307..456 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10044 308..456 + |
1622815237.6189194-CDS-L-elsbetiae_contig10044:3101..3216 | 1622815237.6189194-CDS-L-elsbetiae_contig10044:3101..3216 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10044 3102..3216 + |
1691682788.3342957-CDS-L-elsbetiae_contig10044:3101..3216 | 1691682788.3342957-CDS-L-elsbetiae_contig10044:3101..3216 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10044 3102..3216 + |
1622815237.6306217-CDS-L-elsbetiae_contig10044:4754..4862 | 1622815237.6306217-CDS-L-elsbetiae_contig10044:4754..4862 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10044 4755..4862 + |
1691682788.3465579-CDS-L-elsbetiae_contig10044:4754..4862 | 1691682788.3465579-CDS-L-elsbetiae_contig10044:4754..4862 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10044 4755..4862 + |
1622815237.6405118-CDS-L-elsbetiae_contig10044:6122..6302 | 1622815237.6405118-CDS-L-elsbetiae_contig10044:6122..6302 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10044 6123..6302 + |
1691682788.3558323-CDS-L-elsbetiae_contig10044:6122..6302 | 1691682788.3558323-CDS-L-elsbetiae_contig10044:6122..6302 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10044 6123..6302 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig10044.91.1 >prot_L-elsbetiae_contig10044.91.1 ID=prot_L-elsbetiae_contig10044.91.1|Name=mRNA_L-elsbetiae_contig10044.91.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=184bp
WRLIEPTAYNTILAALSRAGKWEEAVLLMKEMETREVPRDAYSYACLIAA CGRGMQWKKALSSLVEMREAGIEANSFVYSAAIDACAKGRQWRKALVLLR EMEVVDGLPGNLICYNAAADACSKAGRPGEALALLVKMRKVGIKPNEISY LSAISACSRVGDWQQALWLLDEMMVFGVQPDHK* back to topmRNA from alignment at L-elsbetiae_contig10044:308..6302+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig10044.91.1 ID=mRNA_L-elsbetiae_contig10044.91.1|Name=mRNA_L-elsbetiae_contig10044.91.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5995bp|location=Sequence derived from alignment at L-elsbetiae_contig10044:308..6302+ (Laminarionema elsbetiae ELsaHSoW15) TGGCGGCTCATCGAGCCGACGGCGTACAACACCATATTGGCGGCGTTGAG
CCGGGCGGGGAAGTGGGAGGAGGCCGTGCTGCTGATGAAGGAGATGGAGA
CCAGAGAGGTCCCGAGGGATGCCTACAGCTACGCCTGCCTCATCGCTGCG
TGAGTCCCGTCTACTTCTTGCTTGTGTACTTTTCCGTACCCCTTTAGATA
GGACCATTATTCCTTCTTTATGCAGGCATCCCCGGCGCCCTAGTTATGGC
TGTCAATGTGCCTGCTGAAAAGCTCCGACAGAAAGAGCTCCAACATCGCC
ACGCTTTTGAGTTCTATATATGTATGCCGTGTTTAGCTCCCTTGTCCAGG
CAGCCCCGGCTCTCTTGTTCTGATTGTCAGGGTGCCTGCTGAAGAGCCCA
GGTACCCTTTCTTGTGCACACACGCCTCCTCCTGCCCATGGCTCTTGATG
TGTGTTTTGTATCCTCGTGGGACCGACCGCCTTCGCGAAGAATCCCTGTC
TAATTTATATAAAAAATAATAGACAGGGGTTCCGTAACCCAAACCCCAAA
CCGACCCCCCATTAGCCGTTTCCGTACTTTATCCCATATGATTTATTACA
GTAAAGCCTGCGAAGGCTACTGTCGTCGTCGTCCCCCCCCCCTCTCGTTA
TTTCCAGTGCTCGGTGGGCTCCTTGTCACGAGGACGTCTTGCCAGAGTAC
TAAACCGTGGTCACACAGAAGGGTTCCTTTCCCCAAGGCCCCCACTCCCC
CCCGTCTGCGGTGCTTGCCTAAGATTTTGTCGCGAGAAGGATTCAGCCGT
CCCTTTCCCTCGTCGACGGTGAAGTCGAAGTTGTATACCTTACTACCGGT
GTACGGTACTGTACCTTATTTTGAAGTGTGCATGTACCTTTTTTTCGTTG
TTTTCGAGGCCGTCATGCCCTGCGTGTGCTTTGCGCTGGCTGCTGTCCGC
AGGGTGAGATATGTTGTTGTGTCGTCACTTTACCGATGTCGCCCTCGCGA
ATCTCGAGCGTTGTGCCTTGGCTGTCGTGTTAGTTTTTGTTTGTTTTCCC
TCCCATTATTGGCTCATTCGTCGTCTGCCCCACTGGCCCCCACCCATACT
CCACTACGACTAGCTAGACGATCCAACGGGGGTCACACAGGGGGGGGGAG
GGAGTGCACCCCCTCCTACGGTGCCTGCCTGTTACGTCTTGTAATGTAGT
GCTTCCTCGATTCCTGGGCTTTGAAGGCAGAGCCACCACACACTGCACCC
CGGGAATCGGCGTGAATAGACGGTTGCTGACGATTCGGCGGTAAACGAAC
GAAATTGTTGCCCCATTCTTAAATCAATGTATGCGAATGTCAGCAGTCTA
CGTGCAGTCTTGCGAAAAAGTCGTTTTCCAGAGGACTAACTATTGTAGGA
ATATGTGTGTACCCACCACCTTTTTTCCGTCCAAAGAGATGTATGTATGT
ATGTTGTCTTCACATTAAAAACCGTTCCGATCTCTCCATCCAGTACCTCT
CAATGTCCGTACTAATCCAACACTTGATGCGGTCAATTCCCGTGGCCACA
GGCTAACTTATACCCAAGAAAAGGTATATACACGAAAAATAAAATGGACC
CGAAGGGCCAGCAAAGCAACAATAAAACAGATATCGAATCTGGAGCCCTC
CGCCCCCCTCTACACGCTACGTGAGCTAAAAACAAAACTGGAACTCTTCT
TTTTTATGTAGTCTCGCGTCTTGTGTGTGTTTTCGGGGGGACCCCCGGCC
TTAAAACCAAGGGGTACCCCCGGCCTTAAGCTAGGGGGCTGCGGACAACA
CGCTTGTGAAAGGGAAAAGCCACCCCAAAAGTTACGGGAAGAAAGAAAAC
GCAAGAAACCTTACAATAGTGAGAAACAGGACCTGGAAACTGTCTGTACA
AGCGACTTTTGTTGTGGGTCACGGCAGTATCTTCGCCTTAAGAGGTCCGC
ACATCCGCTGAATTCCCTGCATAACGCCGGCCCCATCGCTCACTGCCTGG
CACGCACGCGAGATTTTTTTTCCCTGCGTTTTTAGCTCCTCAGTTTTTTC
TTGATCAAGTTAACCAGTCATCAGCCAATGTGGAGCCCGTCAACGAATTT
GGCGCAGGGGGCATGCGGCGAAGAGGAGGACTGTTGTCTGCGACCAATCA
TTGCTTTGCTGACCCTTCGCACCGAATTTTTAGCTTTCAGTATGCCCTTT
CTAGAGTGTTACTCTGTGACGACGAGAATTGACCATGACCGCGTCAAGTA
TTGGGTCAGTACGGACAATGGAGGTACCGGATAGAGAGATTGGAACGGTT
TTGAATGTGAAGGCAACAACAATATCAAGCAAGCCAGTCAATCTATTCTG
CCCAGCAGAAGAGCCAACCAGTCGAATGCATCAAGCAACCATACCAATCG
CGAGCAATCATCCAGCACTTTCATTCCACAGACCAACCGACCCGAATCAT
CCACCAATCAACCCGAATCATCCGCCGATCAACCCGAATCGCCCGCCAAC
CAACCCGAATTATCCATCAATCACTATTGACAAAATCAGGTGCGGCCCGA
ATCATCCACCAATCAACCCGAATCGTCCACCAACCCACCCAAATCGTCCA
CCAGTCAATCCGAATCGTCCGCCAACCAACCCGATCTCTTCCACCAATCA
AATTTGACGAAATCAGGTGCGGCCCGAATCATCCACCAATCAACCCGAAT
CGTCCACCAACCAACCCAAATCGTCCACCAATCAACCCGAATCGTCCGCT
AACCACCCCGAATCTCTTCCACCAATCAAAATCGACGAAATCAGGTGCGG
CCGGGGCATGCAGTGGAAGAAGGCGCTGTCGTCGCTCGTGGAGATGAGGG
AGGCGGGCATCGAAGCCAACTCGTTTGTGTACTCGGCAGCGATCGACGCT
TGTGCAAAGGTAACCTCACCCTCAGTTTGTCAGCGCCTTCCCTTGCGCTT
TATCTGCCCTTTGTTGCGATTTATTTATGTAGTCTTGCTCCGTGGTATGT
ACAGCAGTGAATGCATTTTATTTATTTTATTTTTTCTTCACATTTATTTC
CAGTGCTCGACGGGCTCCTTGCCACGAGGGTATCTTGCCAAAATACCAAA
CCGTTGTCGCACATAAGGGTTTCTCCCATCCCCGAGCCCCCCCCCCCCAC
CTTCTGCGTTGCTTGCCTACATACATACATAAAAATATTTTATCGCGAGA
AAGGGTCAGCCTGTGTACGTTCGGTGATTATCTACCACGCAATTGCTCGG
CAGCGATCGATACCATGCCAGCCTGCCTCGCGCGTGAAGGTTGATTGGTC
CGCCCTATTTACTTTATAGAGTCCCTATCTGTGGCGTTTTTTTATTTTTT
CCATGCTTTTTGCTGACTCTTTGGGTCTACCTTTTGATTTTTCGGCATAC
CCTTTCTTAGGGTAAGTTAGCCTGTGACCACAGGAATCGACCGCGTCGAG
TGTCTGATTAGTACGGACGTACGGAGGTACTGGGTGGAGAGATCGGAACG
GTTTTTAATGTGAAGAAAACAACAACGACAACAGAGTACTGGATGGAGAG
ATCGGAACGTTTTTTAATGTGAAGACAGCAACAACGACAACAGAGCCCCT
TCAGAGCGTTGCTGTGGATTTGGCATTGGTGCACAGCAGCAGCAGCAGCA
GTAGCACGTGTAGCGACGATGCAGACTTCAATTTGTTTTGGCGACGTGGG
TGTTACTTGTGGGCAGCTGGCCACATTTTACTGCAAGATATTCATTTTTC
AGTATACCCTTTTTTTAGGGTAAGTTATCCTGTGACCACGGGAATCGACC
GCGTCAGTCCTGGATTGGCACGGAGTTATGGAGGTGTACTGGATATGTAG
AGAGATCGGAACGGTTTTTAATGTGAACACAACACACTAACACACACACA
TTGGTACAGTTTACTGCACGATATTGGTGCCGGGGAGGGATAAACGGTTA
TCATCACCGTCGAAGTTATTGAAGTTTGTATTATTGAAGAATTTTCGGGC
CGGGGAGGCCCGGACGGTTATCATCAATATTGGCCCTCTCAATATGTACG
TATGCAGCATCAGTGCTGATCCTCTCATCGTTGCTGTGCGTTGCCGTCAG
CCAGTGCTGTTGACGTGCAGATTTTCAAACGCTCTCGTCGGACTGACAAC
TATTCCCGACCAGCCTGCCGCAAATCCCGGCCTATTCCTTAACCCTAACC
CGGACAAAAGAGCATCGTAGGTACACGCTTGCCGCGAATCCCAGTCTTTC
CGACCCCCAACCACAACACACAACAAACTGCTGCCGTGAACTTTTCAGTA
CTGCTGTAGCGCGTTCACCTTGTCCGCTCCCCCGCGCCAGACCTGCATAA
ATACCAGAGGTTTCTGTCTTTGCTTGACCTCGGTCGTGCTGCTGCTGCTG
CTGCTGCTGCTTGCTGCTGTTGCTGCTGCTGTTGCTGCTGCTACCAGGGG
CGGCAGTGGCGGAAGGCTCTGGTCCTTCTGCGGGAGATGGAGGTTGTGGA
CGGCCTGCCGGGCAACTTGATTTGCTACAATGCAGCCGCCGACGCCTGCA
GCAAGGTCAGTCTATTTTGTCATTTGTCGGCCTTATTTTGTTCCGTTCTG
CGAAATTAGTCCAGTCTGGCTTCTCGGTGGATATGGCATCTTTATCTTCA
CTCCTGTAGTTAGTCCCCACGTGGTCTGTCTACATACCGTAGGTGACACA
AGATACCACACCCCCTGGACCGACTTTTAGAGCTCCATTACTCCGTAACG
AAGAAGGCGCCAGCACCAAACGACACATTTTCGGACAGCCCTCGACTAGA
TATTTTCAACGCCACCCCCTTTCGGCAGTGGCGCTCTTCTTGCTGGGGAG
GAATCGAGCTTTGAAAATCTGTCCAGGGGGTGTGGTATCTTGTGTCACCT
ACGGTAGAGGTTAAACTAATTCAAGTTATCGACTGATGCCCACTTTTTTG
TTGTTGTGCCGCAAAGGTAGGTATTCGACTTACCTGTGTACCGTAGGTGA
CACAAGATACCACACGCTTTGGACAGATTTTCGAAGCTCGATTCCTCCCC
AGCAAGAAGAGCGCCACTGCCGAAAGGGGGTGGCGTTGAAAATATCTAGT
CCAGGGCTGTCTGAACATGTGTCGTTTGGTGCAGCTGGCACCCTCTTCGT
TGCGGAGTACTGGAGCTCTAAAACCCGGTCGAGAGGGTGTGGCATCTTGT
GTCACCTACAATACGGTACGTGCGTGTAACTTGCGTAGGTGTTTGTTTCT
ACGTATTGGGCGCGCTTGTTCCAAATATCATTTTCCCTTGGCACAGGTGC
TTGAGTCAAGAAGCAAAAAGCAAGAAATCAAGATGTATTCCCAACACCAA
AACCGATTTTACCCCCAGAGCTGTAATAGTTTAATGTTGTCTCGCGTGTG
CTCGCTTTTCTGCATCCGCGGTCTTGTCGAACACCCTTTGAGACATACTA
CAGGCGTTATGTATTCCAAAAATCGATCGAAAGCCTGTCTACAAACACTT
CTTTTCGATCTTGTGATCAGCAACCCACGAAAAAAATCGCATCCTTTATG
TACTGCCGCTTGAATCCAGAATGATGACCCACAAAGAACCCGAATAATAA
TTGATTTCACTGCTTCCTAATTCACCACAAGCCGTCGTATCTTCAGCATC
AAGTTGTTTTCTGAACGACGTTCACCCACAATGCTGTTGTTGTTGTTGTT
GTTGTCGCTGTTGTTGTCTTCACACATGAAAAACTCTCTGTCTAGTACCT
CCAATCTTGTCCGAAGTGGTAACCCCCCCCCCCGCCACCCACAAAACCCC
ACTTGTGGAAATCAGGCGGGTAGACCCGGCGAAGCGCTGGCCCTCCTGGT
CAAGATGCGGAAGGTGGGCATCAAGCCGAACGAGATATCGTACCTTTCTG
CGATCTCGGCGTGCTCTCGCGTCGGGGACTGGCAGCAGGCGCTGTGGCTG
TTGGACGAGATGATGGTGTTCGGCGTGCAGCCGGATCATAAGTGA back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig10044:308..6302+ >mRNA_L-elsbetiae_contig10044.91.1 ID=mRNA_L-elsbetiae_contig10044.91.1|Name=mRNA_L-elsbetiae_contig10044.91.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1104bp|location=Sequence derived from alignment at L-elsbetiae_contig10044:308..6302+ (Laminarionema elsbetiae ELsaHSoW15) TGGCGGCTCATCGAGCCGACGGCGTACAACACCATATTGGCGGCGTTGAG CCGGGCGGGGAAGTGGGAGGAGGCCGTGCTGCTGATGAAGGAGATGGAGA CCAGAGAGGTCCCGAGGGATGCCTACAGCTACGCCTGCCTCATCGCTGCT GGCGGCTCATCGAGCCGACGGCGTACAACACCATATTGGCGGCGTTGAGC CGGGCGGGGAAGTGGGAGGAGGCCGTGCTGCTGATGAAGGAGATGGAGAC CAGAGAGGTCCCGAGGGATGCCTACAGCTACGCCTGCCTCATCGCTGCGT GCGGCCGGGGCATGCAGTGGAAGAAGGCGCTGTCGTCGCTCGTGGAGATG AGGGAGGCGGGCATCGAAGCCAACTCGTTTGTGTACTCGGCAGCGATCGA CGCTTGTGCAAAGGTGCGGCCGGGGCATGCAGTGGAAGAAGGCGCTGTCG TCGCTCGTGGAGATGAGGGAGGCGGGCATCGAAGCCAACTCGTTTGTGTA CTCGGCAGCGATCGACGCTTGTGCAAAGGGGCGGCAGTGGCGGAAGGCTC TGGTCCTTCTGCGGGAGATGGAGGTTGTGGACGGCCTGCCGGGCAACTTG ATTTGCTACAATGCAGCCGCCGACGCCTGCAGCAAGGGGCGGCAGTGGCG GAAGGCTCTGGTCCTTCTGCGGGAGATGGAGGTTGTGGACGGCCTGCCGG GCAACTTGATTTGCTACAATGCAGCCGCCGACGCCTGCAGCAAGGCGGGT AGACCCGGCGAAGCGCTGGCCCTCCTGGTCAAGATGCGGAAGGTGGGCAT CAAGCCGAACGAGATATCGTACCTTTCTGCGATCTCGGCGTGCTCTCGCG TCGGGGACTGGCAGCAGGCGCTGTGGCTGTTGGACGAGATGATGGTGTTC GGCGTGCAGCCGGATCATAAGTGAGCGGGTAGACCCGGCGAAGCGCTGGC CCTCCTGGTCAAGATGCGGAAGGTGGGCATCAAGCCGAACGAGATATCGT ACCTTTCTGCGATCTCGGCGTGCTCTCGCGTCGGGGACTGGCAGCAGGCG CTGTGGCTGTTGGACGAGATGATGGTGTTCGGCGTGCAGCCGGATCATAA GTGA back to top
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