mRNA_L-elsbetiae_contig11006.910.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11006.910.1
Unique NamemRNA_L-elsbetiae_contig11006.910.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11006.910.1 vs. uniprot
Match: A0A6H5KNN6_9PHAE (Utp12 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNN6_9PHAE)

HSP 1 Score: 305 bits (781), Expect = 7.640e-96
Identity = 171/207 (82.61%), Postives = 184/207 (88.89%), Query Frame = 1 
Query:    1 RAAKRLKAEGA--EAGMSIADRLEALSAAIDEEAERAGAPGGGVLALTAAAGEKDGAIQPKAESLATVLTQALQSGDESLLEQCLSVGEQGMIEATVERLPSSKVLQFLLRVVAKLEKRPNRAAALGRWIRALLSCHLGYLVSVPGLPDKLALLHQLIDRRVASFPKLLQLHGRLDLLLARAKAEASRGGDAGAGAMDRPESVYREE 615
            RA KRLK  G   EAGM+IADRLEALSAA+D EAERA A  GG +AL  A G + GA+QP+AESL+TVLTQALQSGDESLLEQCL V +QG+IEATVERLPSSKVLQFLLRVVAKLEKRPNRAA+LGRWIRALLSCHLGYLVSVPGLP+KLALLHQLIDRRVASFPKL+QLHGRLDLLLARAKAE+SR   AGA AMD PESVYREE
Sbjct:  139 RAPKRLKGGGEDEEAGMTIADRLEALSAAVDHEAERAWADKGGRMALAWAPGGEGGAVQPRAESLSTVLTQALQSGDESLLEQCLDVVDQGVIEATVERLPSSKVLQFLLRVVAKLEKRPNRAASLGRWIRALLSCHLGYLVSVPGLPEKLALLHQLIDRRVASFPKLIQLHGRLDLLLARAKAESSRRDAAGARAMDTPESVYREE 345
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BLAST of mRNA_L-elsbetiae_contig11006.910.1 vs. uniprot
Match: D7FJM9_ECTSI (Utp12 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJM9_ECTSI)

HSP 1 Score: 271 bits (692), Expect = 1.400e-79
Identity = 156/207 (75.36%), Postives = 166/207 (80.19%), Query Frame = 1 
Query:    1 RAAKRLKAEGAE--AGMSIADRLEALSAAIDEEAERAGAPGGGVLALTAAAGEKDGAIQPKAESLATVLTQALQSGDESLLEQCLSVGEQGMIEATVERLPSSKVLQFLLRVVAKLEKRPNRAAALGRWIRALLSCHLGYLVSVPGLPDKLALLHQLIDRRVASFPKLLQLHGRLDLLLARAKAEASRGGDAGAGAMDRPESVYREE 615
            RA KRLKA G E  AGM+IADRLE                           G + GA+QP+AESL+TVLTQALQSGDESLLEQCL V +QG+IEATVERLPSSKVLQFLLRVVAKLEKRPNRAA+LGRWIRALLSCHLGYLVSVPGLPDKLALLHQLIDRRVASFPKL+QLHGRLDLLLARAKAE+SR   AGA AMD PESVYREE
Sbjct:  422 RAPKRLKAGGGEEEAGMTIADRLEXXXX-----------------------GGEGGAVQPRAESLSTVLTQALQSGDESLLEQCLDVVDQGVIEATVERLPSSKVLQFLLRVVAKLEKRPNRAASLGRWIRALLSCHLGYLVSVPGLPDKLALLHQLIDRRVASFPKLIQLHGRLDLLLARAKAESSRRDAAGARAMDTPESVYREE 605
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BLAST of mRNA_L-elsbetiae_contig11006.910.1 vs. uniprot
Match: A0A836CF23_9STRA (Dip2/Utp12 family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF23_9STRA)

HSP 1 Score: 132 bits (331), Expect = 2.120e-31
Identity = 76/171 (44.44%), Postives = 110/171 (64.33%), Query Frame = 1 
Query:   43 MSIADRLEALSAAIDEEAERAGAPGGGVLALTAAAGEKDGAIQPKAESLATVLTQALQSGDESLLEQCLSVGEQGMIEATVERLPSSKVLQFLLRVVAKLEKRPNRAAALGRWIRALLSCHLGYLVSVPGLPDKLALLHQLIDRRVASFPKLLQLHGRLDLLLARAKAEAS 555
            MS+ +RL ALSA ++ +          +      A  K     P+A+SL TVL QALQS D+SLLE CL V +  +IEAT++R+P+++VL  L R+VAK EKRP R A L  WIR++L  H GYL+S+P L  +L  LHQ+I+ R+++F + L+L GRL  +LA A + ++
Sbjct:    1 MSLGERLLALSAELEADTAAQERHRNALGLPREDAQAKAAKEPPRADSLVTVLMQALQSMDDSLLEHCLQVNDSAIIEATIDRMPAARVLLLLSRLVAKFEKRPQRGAVLCTWIRSVLVRHTGYLLSIPDLSVRLGRLHQMIESRLSTFTRFLELDGRLKQILAHAPSSSA 171
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BLAST of mRNA_L-elsbetiae_contig11006.910.1 vs. uniprot
Match: A0A7S2MLY1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MLY1_9STRA)

HSP 1 Score: 123 bits (308), Expect = 1.700e-26
Identity = 82/204 (40.20%), Postives = 122/204 (59.80%), Query Frame = 1 
Query:    4 AAKRLKAEGAEAGMSIADRLEALSAAIDEEAERAGAPGGGVLALTAAAGEKDGAIQPKAESLATVLTQALQSGDESLLEQCLSVGEQGMIEATVERLPSSKVLQFLLRVVAKLEKRPNRAAALGRWIRALLSCHLGYLVSVPGLPDKLALLHQLIDRRVASFPKLLQLHGRLDLLLARAKAEASRGGDAGAGAMDRPESVYREE 615
            A+KR K EG +  +++ +RLEALS ++    E                 EK  A  PKA+S ATVL QALQS D+SLLEQCL + +Q +IE +++RL   +VL  +L++  K+E+ P R   L  W+RA+++ H  YL+S+P L  KL+ L+Q +++R++ FPKLL L GRL+L LA          D+   A   P++VY +E
Sbjct:  303 ASKRAK-EGDKNQLTLGERLEALSQSLKPPIE-----------------EKQEA--PKADSFATVLAQALQSSDDSLLEQCLGMQDQKVIETSIDRLALDRVLPLVLKIHEKMERTPTRN--LHVWLRAIVTKHTSYLMSIPDLQTKLSGLYQTLNQRISLFPKLLSLSGRLELALANVMCSND---DSAEDAASIPQAVYDDE 481
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BLAST of mRNA_L-elsbetiae_contig11006.910.1 vs. uniprot
Match: A0A1Y1IL79_KLENI (U3 small nucleolar RNA-associated protein 5 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IL79_KLENI)

HSP 1 Score: 123 bits (308), Expect = 4.170e-26
Identity = 80/173 (46.24%), Postives = 102/173 (58.96%), Query Frame = 1 
Query:   97 ERAGAPGGGVLALTAAAGEKDGAIQPKAESLATVLTQALQSGDESLLEQCLSVGEQGMIEATVERLPSSKVLQFLLRVVAKLEKRPNRAAALGRWIRALLSCHLGYLVSVPGLPDKLALLHQLIDRRVASFPKLLQLHGRLDLLLARAKAEA-SRGGDAGAGAMDRPESVYRE 612
            E AGA GG       A G   G+  P+A SL  +LTQAL S D  LLE+CL+VG++ +I  TV RL +S     L  + AKL+ RP+R   L  WIRA L  H G L++ PG    L  LHQLID R+A FP LL L GRLDL++A+  A + +  G  GA A+D   +VY E
Sbjct:  457 ELAGAAGGSGRQDEVAGGAA-GSSAPRAHSLQVLLTQALASQDGQLLEKCLAVGDEKVIGNTVRRLRASDAAALLASLTAKLQARPSRGMTLLPWIRAALLQHAGTLMAAPGAQPSLLALHQLIDARLAVFPPLLALSGRLDLMMAQVAAFSDAHHGSGGASALDAGTAVYEE 628
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BLAST of mRNA_L-elsbetiae_contig11006.910.1 vs. uniprot
Match: A0A482SP61_9ARCH (Utp12 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SP61_9ARCH)

HSP 1 Score: 117 bits (293), Expect = 4.530e-26
Identity = 64/149 (42.95%), Postives = 96/149 (64.43%), Query Frame = 1 
Query:  172 PKAESLATVLTQALQSGDESLLEQCLSVGEQGMIEATVERLPSSKVLQFLLRVVAKLEKRPNRAAALGRWIRALLSCHLGYLVSVPGLPDKLALLHQLIDRRVASFPKLLQLHGRLDLLLARAKAEASRGGDAGAGAMDRPESVYREED 618
            P A+SL T+L QALQSGDE LLEQCLS  +  +I +T ++L + +VL  L ++VAK E+RP+R   + +W+ A+L  HL YL++VP L  +LA L Q++++R  S+ +L  L GRLDLL+ +  +       A      +P +VY E+D
Sbjct:  129 PTADSLVTLLDQALQSGDEELLEQCLSRADMAIITSTTQKLSTHRVLILLKKLVAKFERRPSRGLLITQWLSAVLRQHLAYLITVPDLTRQLAGLSQILEQRTQSYTRLASLAGRLDLLMTQVSSSREL---AQKDTAFQPAAVYHEDD 274
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BLAST of mRNA_L-elsbetiae_contig11006.910.1 vs. uniprot
Match: A0A0D2UKQ3_CAPO3 (Uncharacterized protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2UKQ3_CAPO3)

HSP 1 Score: 122 bits (307), Expect = 5.910e-26
Identity = 68/158 (43.04%), Postives = 101/158 (63.92%), Query Frame = 1 
Query:  148 GEKDGAIQPKAESLATVLTQALQSGDESLLEQCLSVGEQGMIEATVERLPSSKVLQFLLRVVAKLEKRPNRAAALGRWIRALLSCHLGYLVSVPGLPDKLALLHQLIDRRVASFPKLLQLHGRLDLLLAR--AKAEASRGGDAGAGAMDRPESVYREE 615
            G   G   PKA SL  +L QAL SGD  LLE CLSV  + +I  T+++LP+S V+ FL  +V K + +P+R   L  WIR LL  H  YL++VP L + L+ L+QL+D R++ F KLL+L GRLDL++++  ++A+   G +     + RP +VY+E+
Sbjct:  466 GGLSGRAPPKAHSLVQMLVQALHSGDNQLLEDCLSVSNEAVIRNTMKKLPASYVIPFLTLIVEKFQAKPSRGLTLLIWIRGLLLVHTAYLMTVPNLVEALSGLYQLVDARLSVFKKLLKLSGRLDLIISQIASRAQVEVGDNDIDEELTRPRTVYQED 623
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BLAST of mRNA_L-elsbetiae_contig11006.910.1 vs. uniprot
Match: A0A7S1UEK8_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UEK8_9STRA)

HSP 1 Score: 111 bits (277), Expect = 3.030e-24
Identity = 66/178 (37.08%), Postives = 103/178 (57.87%), Query Frame = 1 
Query:   46 SIADRLEALSAAIDE-------EAERAGAPGGGVLALTAAAGEKDGAIQPKAESLATVLTQALQSGDESLLEQCLSVGEQGMIEATVERLPSSKVLQFLLRVVAKLEKRPNRAAALGRWIRALLSCHLGYLVSVPGLPDKLALLHQLIDRRVASFPKLLQLHGRLDLLLARAKAEASR 558
            +I +RL+AL+A ++        EA R+ APG                    AESL++VLTQAL+S D  LLE CL   +  +I+ T+ +L  + ++  +  +V KLE+RP R + L  WI A++S H  Y++SVP + +KL +LHQL++ R    P L+ + GRLDL+ ++A+A   R
Sbjct:   18 TIGERLKALAADLERKKREDEAEASRSQAPG--------------------AESLSSVLTQALKSKDRKLLEHCLQFHDDAVIDRTILKLSPTLLVPLVNEIVNKLERRPARLSELSTWISAVMSHHTAYILSVPAIQEKLGMLHQLLEERTRVLPSLMSVSGRLDLIFSQARASMDR 175
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BLAST of mRNA_L-elsbetiae_contig11006.910.1 vs. uniprot
Match: A0A4D9D9A1_9STRA (Utp12 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D9A1_9STRA)

HSP 1 Score: 117 bits (293), Expect = 3.160e-24
Identity = 65/127 (51.18%), Postives = 85/127 (66.93%), Query Frame = 1 
Query:  175 KAESLATVLTQALQSGDESLLEQCLSVGEQGMIEATVERLPSSKVLQFLLRVVAKLEKRPNRAAALGRWIRALLSCHLGYLVSVPGLPDKLALLHQLIDRRVASFPKLLQLHGRLDLLLARAKAEAS 555
            KA+SL TVL+QAL+SGDE LLEQCL+V +  ++  TV  L +  V  F+  +V KLEKRPNRA +L  WIR +L  H  YL+  PGL  +LA LH++  RRV   P+LL L GRL+L+LA+     S
Sbjct:  479 KADSLFTVLSQALKSGDEELLEQCLAVQDTQILSKTVRLLTAPLVFPFINTLVRKLEKRPNRAVSLCPWIRFVLLHHTSYLIGTPGLDQRLAGLHKVATRRVTVLPRLLGLSGRLELMLAQISKHGS 605
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BLAST of mRNA_L-elsbetiae_contig11006.910.1 vs. uniprot
Match: A0A7R9U6H1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U6H1_9STRA)

HSP 1 Score: 114 bits (285), Expect = 2.890e-23
Identity = 57/124 (45.97%), Postives = 89/124 (71.77%), Query Frame = 1 
Query:  181 ESLATVLTQALQSGDESLLEQCLSVGEQGMIEATVERLPSSKVLQFLLRVVAKLEKRPNRAAALGRWIRALLSCHLGYLVSVPGLPDKLALLHQLIDRRVASFPKLLQLHGRLDLLLARAKAEA 552
            ESL +VLTQAL+S D  L+E CL   + G+I+AT++RL +S VL FL  VV +LE+RP R   L  W++A+++ H  Y++SVP + +KLA++HQ+++ R  +   L+ + GRLDL+L++A+A A
Sbjct:  426 ESLQSVLTQALKSSDRKLVELCLQTTDSGVIDATIKRLSASLVLPFLQEVVNRLERRPARLPELCPWLQAVMTHHTSYVLSVPAVHEKLAVVHQVLEERTRTLHSLMSISGRLDLILSQARASA 549
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11006.910.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KNN6_9PHAE7.640e-9682.61Utp12 domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FJM9_ECTSI1.400e-7975.36Utp12 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A836CF23_9STRA2.120e-3144.44Dip2/Utp12 family-domain-containing protein n=1 Ta... [more]
A0A7S2MLY1_9STRA1.700e-2640.20Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A1Y1IL79_KLENI4.170e-2646.24U3 small nucleolar RNA-associated protein 5 n=1 Ta... [more]
A0A482SP61_9ARCH4.530e-2642.95Utp12 domain-containing protein n=1 Tax=archaeon T... [more]
A0A0D2UKQ3_CAPO35.910e-2643.04Uncharacterized protein n=1 Tax=Capsaspora owczarz... [more]
A0A7S1UEK8_9STRA3.030e-2437.08Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A4D9D9A1_9STRA3.160e-2451.18Utp12 domain-containing protein n=2 Tax=Monodopsid... [more]
A0A7R9U6H1_9STRA2.890e-2345.97Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11006contigL-elsbetiae_contig11006:714..5752 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score262.7
Seed ortholog evalue1.7e-67
Seed eggNOG ortholog2880.D7FJM9
Preferred nameWDR43
KEGG rclassRC00097,RC00609
KEGG koko:K01966,ko:K14546
KEGG ReactionR01859
KEGG Pathwayko00280,ko00630,ko00640,ko01100,ko01120,ko01130,ko01200,ko03008,map00280,map00630,map00640,map01100,map01120,map01130,map01200,map03008
KEGG ModuleM00373,M00741
Hectar predicted targeting categoryother localisation
GOsGO:0000462,GO:0000785,GO:0000792,GO:0001650,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0006139,GO:0006355,GO:0006356,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006950,GO:0007154,GO:0008150,GO:0008152,GO:0009267,GO:0009605,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0009991,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016070,GO:0016072,GO:0019219,GO:0019222,GO:0022613,GO:0030490,GO:0030515,GO:0030684,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0033553,GO:0033554,GO:0034455,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0042594,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0045893,GO:0045935,GO:0045943,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0071496,GO:0071704,GO:0071840,GO:0080090,GO:0090069,GO:0090070,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:1990904,GO:2000112,GO:2000232,GO:2000234,GO:2001141
EggNOG free text desc.positive regulation of rRNA processing
EggNOG OGsKOG4547@1,KOG4547@2759
EC2.1.3.15,6.4.1.3
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03009
Exons5
Model size1541
Cds size723
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815316.760093-UTR-L-elsbetiae_contig11006:713..14891622815316.760093-UTR-L-elsbetiae_contig11006:713..1489Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11006 714..1489 -
1691682834.4596624-UTR-L-elsbetiae_contig11006:713..14891691682834.4596624-UTR-L-elsbetiae_contig11006:713..1489Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11006 714..1489 -
1622815316.8697884-UTR-L-elsbetiae_contig11006:5710..57521622815316.8697884-UTR-L-elsbetiae_contig11006:5710..5752Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11006 5711..5752 -
1691682834.5253413-UTR-L-elsbetiae_contig11006:5710..57521691682834.5253413-UTR-L-elsbetiae_contig11006:5710..5752Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11006 5711..5752 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815316.7711012-CDS-L-elsbetiae_contig11006:1489..16051622815316.7711012-CDS-L-elsbetiae_contig11006:1489..1605Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11006 1490..1605 -
1691682834.4738522-CDS-L-elsbetiae_contig11006:1489..16051691682834.4738522-CDS-L-elsbetiae_contig11006:1489..1605Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11006 1490..1605 -
1622815316.814652-CDS-L-elsbetiae_contig11006:3356..34481622815316.814652-CDS-L-elsbetiae_contig11006:3356..3448Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11006 3357..3448 -
1691682834.48381-CDS-L-elsbetiae_contig11006:3356..34481691682834.48381-CDS-L-elsbetiae_contig11006:3356..3448Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11006 3357..3448 -
1622815316.8318107-CDS-L-elsbetiae_contig11006:4080..43111622815316.8318107-CDS-L-elsbetiae_contig11006:4080..4311Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11006 4081..4311 -
1691682834.493105-CDS-L-elsbetiae_contig11006:4080..43111691682834.493105-CDS-L-elsbetiae_contig11006:4080..4311Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11006 4081..4311 -
1622815316.8477986-CDS-L-elsbetiae_contig11006:4861..49801622815316.8477986-CDS-L-elsbetiae_contig11006:4861..4980Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11006 4862..4980 -
1691682834.5059588-CDS-L-elsbetiae_contig11006:4861..49801691682834.5059588-CDS-L-elsbetiae_contig11006:4861..4980Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11006 4862..4980 -
1622815316.857716-CDS-L-elsbetiae_contig11006:5545..57101622815316.857716-CDS-L-elsbetiae_contig11006:5545..5710Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11006 5546..5710 -
1691682834.516258-CDS-L-elsbetiae_contig11006:5545..57101691682834.516258-CDS-L-elsbetiae_contig11006:5545..5710Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11006 5546..5710 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11006.910.1prot_L-elsbetiae_contig11006.910.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11006 1490..5710 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11006.910.1

>prot_L-elsbetiae_contig11006.910.1 ID=prot_L-elsbetiae_contig11006.910.1|Name=mRNA_L-elsbetiae_contig11006.910.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=241bp
MSIADRLEALSAAIDEEAERAGAPGGGVLALTAAAGEKDGAIQPKAESLA
TVLTQALQSGDESLLEQCLSVGEQGMIEATVERLPSSKVLQFLLRVVAKL
EKRPNRAAALGRWIRALLSCHLGYLVSVPGLPDKLALLHQLIDRRVASFP
KLLQLHGRLDLLLARAKAEASRGGDAGAGAMDRPESVYREEDDEEGSGKE
DEDSEEDSGEDGEGSGDQDDMDEDDESEDDDEDEEEAEEE*
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mRNA from alignment at L-elsbetiae_contig11006:714..5752-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11006.910.1 ID=mRNA_L-elsbetiae_contig11006.910.1|Name=mRNA_L-elsbetiae_contig11006.910.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5039bp|location=Sequence derived from alignment at L-elsbetiae_contig11006:714..5752- (Laminarionema elsbetiae ELsaHSoW15)
AGGGCGGCGAAGCGGTTGAAGGCCGAAGGGGCCGAGGCCGGCATGAGCAT
CGCCGACCGCCTGGAGGCCTTGTCGGCCGCCATCGACGAGGAGGCCGAGA
GGGCCGGTGCGCCCGGGGGAGGCGTGTTGGCGTTAACCGCAGCCGCCGGG
GAGAAGGACGGGGCTATTCAGCCAAAGGCGGAGTCTTTGGCCACGGTGCT
CACGCAGGTACATCCCATGTACAGTATCATGAATGCATACCATGTATCAT
GTATGCACGGGCGTCTTGCCTCCTCCCCGCCTTTGTGCGGTTGGGTGTTT
CCTTCGTGTGCTGACCGCGCGTTGTTTCGGTGCGCCGAGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGATTTATTCTGGTATTTATGTATGCAGATTGA
CTCGAGAGGTTTCGCTGGTGGGTTGTCTCAGCTCTGTGAGTTGTCGGGTT
GAGCTGAGATCGGTGTTGGTTTTACCACTCCTTCGGTTCGCAAGGCTTTT
TAAGATTGTGTAGCGGGGTTCATTAGGTTGTTCTGTCTCCCGGGGGTCAA
GCTCAAACGCCAGGCTCTCGTTTGTCGCCCCCCCCCCCCCCCCCCCCCCC
CCCCCGCCCCGCCACCCGGGGGCCGAGCCCTGCGGGGGCCGGGGCCGCCC
GTGGGGGGGGGGGGNNNNNNNNNNTTGTGGGGGGGGGTTTTTTGGTTTTT
TTTTTCTCCCGGGGGGAAGGCCCAACCCCCGGGCTCTGTTTTTTCCCCCC
CCCCCCCCCCCCCCCTACCCAGGCGCTGCAATCCGGGGACGAGAGCTTGC
TGGAGCAGTGCCTGTCTGTGGGGGAGCAGGGCATGATCGAGGCCACCGTG
GAGCGCCTGCCTTCTTCCAAGGTCTTGCAGTTCCTGCTCAGGTACGTACG
CAAGCATAGGCCATTCTTCACCATGCGCTCTATTCGAAATACTTACTACT
GGGGGGTGTTGGCGATATCACACTTAGTGTTGTTGGCGATATCACACTTA
ATATTTAGTCTATGAGTGGTTTGCATGTTCTGGCATTTGGACGACGGGGG
AGTATGGCGTGCCGAACACGTCAGCGACGGGGCCGCTTTTCGGTTTTGTC
GTCTCGCGCGGGTTCTGTGCTGTCGCTCAGTCACGGTTCAGGCCAGACCT
TGTCTTGGGGCATCCACACATGGAACCGAGTCCTGCACCCCTGCCCGCCC
GCCCGCCACTTGGTCTCGGTCAACACCCCCCTTTCTGCTGTTGTTGCCCC
CCTCAAGGTTTAGCCTCGCCCGACACCGCACCGCACTTCATTTGCCGCCG
TTTCCCCGGATCATTTCAAAACTAATCTAAATTTGCTCGGATCCTCGTCC
GAGCGCTGGTAAACTCAGTCGGTAAACTTGTGGGTATCCGTAAAAGAAAA
AAAAAGAAAAAAAAATCCTAATTCTTCTGTTCTTGTTTCAGGGTGGTGGC
GAAGCTGGAGAAGCGCCCGAACCGTGCGGCCGCGCTGGGGCGGTGGATAC
GCGCCCTGCTGTCGTGCCACCTGGGGTACCTGGTGTCCGTGCCGGGGTTG
CCGGACAAGCTGGCGTTGCTGCACCAGCTCATCGATCGCAGGGTGGCCTC
GTTCCCCAAGCTGCTCCAGCTCCACGGCCGCCTCGACCTGCTTCTCGCAC
GCGCTAAGGCGGAGGCCAGCAGGTGGGAAGGAACTTGAGTTTTATTTTAC
ATACGCCTCTCTTCCTCTGTGCGTGTTTTACTACGGACTGTATGTTTGTC
ACAGCTACTGCCGTATGTGTGTACGTGTGGTGTGTTTCGTTTGCTGTTCG
GTCCTGTCTTTCTCGACGATTGCGGTGTCTTGAGGGAAGCTTGAAGCTTT
CGCCCGGGTTTGCTGGTAGAATGCCAGTGGCGAGAGTGATTTTTGTTTTG
TTCATTGTTGTAACGAGTCAAAAAAGGATGCTCGTTGTTGCGTTCATTTT
GGAGGACGTGTTTGGTCGTCGCCAAGTTTTTTTTTACCTTTGGTGGCCCC
TTTCGACCGCGTCGAGGCGAGGTCGGGCGCAGCAGGCATGTGGCAGTTTT
GGAAGGGGTTCGTTTCGTCGTCGGTGAGCTGATGCCACTGCCATGGCCGC
CCGCACATCAGTCCTTGCTGCGTGTGGACAATCTGCTGCCCCCTATGCTC
TTGTGTTTGTTGGCCAGCATCCTTTGCCTTTGCCTCCCCAAGCCTGACGG
CGAGGCAAAAGAAAAACGGCGCTCAGAGTCATCACCGGCAGCGCTATCTT
GAGTCTGGTGTTTTTCGTCCCCTTTTGTGTGTGTGTGTGTGTGTGTGTGT
GTAGGGGGGGCGATGCGGGAGCAGGGGCTATGGACAGACCGGAGTCCGTC
TACAGGGAGGAGGATGACGAGGAGGGAAGCGGTAAAGAAGACGAAGGTAG
GCTCGGCTGCGCTTTGGACGGCGGCTCAGACGTCCATCCGGTTCAGGGCA
GACATAAGTTGTGACTAGGTTTCTCTTCTTGTTGCGATGTACGTTTCGCG
AGAAGAAATGCGTTGTTCCAGGCACGGTTTGTACATGGTGTTATTTTAAT
TAATGTATACAAATGTCAGCAGGCTAAATATGTCCAGTCTGCGAAAGAAT
TGTTCCAGAGGGAACGTTGTAGGCATGCTATTTTGTGTGTTTTTGTCATC
TCTATCGCATGTTGCAGGCCGCAATTGTGCACGGTCACGGGCATTGTCGG
AAAGGAGCAGCTTCATTCTGTTTTTTTTTGTTGTGTGTATAGATGCAAGG
TCTGGCCGCTTACGCGGCCCGGCTCAGTTGAAAGCGGTTCCAAGGCAAAG
ATAAATATCTACTTCCTTCCTATAAAAAGCTGCTGTTGTCGAAAAGTTGT
ACGGCAGAGTGTTTGTGCGTGTGGCAATGGAAGCACAAACAACACAGCAG
TTGCTTTTTATACTTCCGAAAAACACGCGTCAGTAGGGAGGCCAATGCAT
ACTTTTCCACCAGCGACCTCATTTAGAGTGCACATTGCACAAAGGATGTG
CAAGCAGAACTGCCCTTGTTGTATTTGACGGAGCCACCGTGAGTGTAATT
GCGTGTGCACAACAAAGGATGTGCACAACCATTAAAGTATTGGGTCTTTG
GCTGAGGCCTCCTGCCCACCTCGTCCAGTGGGTTTTCTCCGTTTTCCTCA
CTCTAGTCACTGTCAAGCTTTTAGGGGGAATAAGAGAAGAGGAGTGATCA
CCTGGTGGGGTCATACCCCCAGTCATATCGGGGGTCATTGGTGGGGGTAA
ATCTGTGCCATATTTTCCCCTCCGCTGTGCCCCCAGTGTTACACATGTGT
ACATAGAGTGCTTCGCAGAGGGTACAATACACGTCCGGCTCGCGCATTGA
CCCCTTCGGCACGTTTACCAGTTCGGCGAATTAACGGAGTATGTATGTAC
ATGGATCTGAGTCAAATTCCCAAAAAGTAAAAAATCTACGTTGCATGTAG
AGCAGCAGTTGAGTGTGACAGAAAAACGAACAGAGGCGCTGTCGCGAGTG
TACCCGTGTGCACAACAATACACACATGTTCATAAGTCTAGTGCCTCGCA
GAGGGTACAATGAACGTTCGGCTCGCGCATTGACCCCTTCCGGAGGAGCG
TTCACCAGTTCGGCGAATTAACGGAGTACATATGTATGTACATAATAGAT
CAGAGTCAAATTTCCAAACAAATAAAATGCATGCGTATTTAGAGCGTGAC
AAACATACAGACAAGGGCTAGGGCTGCCAGGAAGAAAGAGAGCGAGAGAG
AAGAGGATGAGCTGTGGAGGGTGCGTAGCAGTAGGGGGTGGTCAAAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGTGGGAAGCGGTGCAGC
CTTTACCGAGTGAGTGGAGGAACTTTTCAATTCCAACGGTTCAGAAATAC
TGCTCTCAAAGCGCTCGAAAAAATGGAGATCCGGCTCTGTGAGCCCTCTA
CAGCCGGCGAAATGGAGAGATTTCAGGCGGATCTTAATACTCTCTAAAAG
AACTAGATACAGCCTTGTCTTTCCCTTGTAGGCACTCTCGCCAGAATGCG
AACGAACACTGACTGTGGACGAGCGTAGCATCACTCACTCACTCACCTTA
ATTCTCACGCAACGCTGCAACCCCAACTCTTTCTGACCGGTTCGCAGATA
GCGAAGAGGACAGCGGCGAGGATGGGGAGGGAAGTGGGGACCAAGACGAC
ATGGATGAAGACGATGAGAGCGAAGATGATGACGAGGACGAGGAGGAGGC
AGAGGAAGAATGAATGCATTTGCTTGGGGTGCACGGTTAACCCTGCTTCC
CGATTACTCTTTCGTACTTTCTGTTCGCATGTAGTGACTTGTGAGACCAC
ATCGTGTTGTGGAAAAGGCGAATTCTCACCTTTATTGGGCGTGTTGCTCA
TCTTGAAATTGAGATTTTTTAGTGGTGTCTGCGGGGCGAAATTGAAATGC
CGGACTACATATATAGCAAAAAGAGAGTGTGTTTGCTGCTGAGTCGGGAC
GGCCTTGATTTATCTGAGCGCAGTCAGTACTTTTGGCTCTACGGTTGGGT
GCCATGAACCTTCGGGGCTTGTCGCATGCCGAAGGCACGCGGTGTGTAGC
TGTCGGCAGAGATTTCACTCTTGCGGGAGCCATGCATGCCGTCCAGAGTC
CGGACGGGGACACGGGTTATGGTCTTCTGAAGCGCGCTGCGTCTTAAAAC
TGGTACCCCGTATCACACATAAAATATGACTTGTTCGTACTCTGCACATG
CATATCTATTCGTCTTGCGGCACTTTGCGGCTGGGCGGAGTATTTAGGAT
GCATAGACTACTGCGCTTGGCCAGCTTGTAGCCCGAGGAAATGTCAGGCC
TACCCTAAAACCTCGAGTTAGGCCAGGTTATTAGGTTTGCTGTAGTTTCC
AAACCATCGCAAAAGTATGCCTATCCTGCAGAGCATACACACACTCGATC
GGGTGGCAAAGGGTGAATGTGAAGGAAGACATGGCAGCCTCCCATGGTTC
TAGACACGCAACCGGGCTTCCGGCTCGGGAAGAGAGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11006:714..5752-

>mRNA_L-elsbetiae_contig11006.910.1 ID=mRNA_L-elsbetiae_contig11006.910.1|Name=mRNA_L-elsbetiae_contig11006.910.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1446bp|location=Sequence derived from alignment at L-elsbetiae_contig11006:714..5752- (Laminarionema elsbetiae ELsaHSoW15)
ATGAGCATCGCCGACCGCCTGGAGGCCTTGTCGGCCGCCATCGACGAGGA
GGCCGAGAGGGCCGGTGCGCCCGGGGGAGGCGTGTTGGCGTTAACCGCAG
CCGCCGGGGAGAAGGACGGGGCTATTCAGCCAAAGGCGGAGTCTTTGGCC
ACGGTGCTCACGCAGATGAGCATCGCCGACCGCCTGGAGGCCTTGTCGGC
CGCCATCGACGAGGAGGCCGAGAGGGCCGGTGCGCCCGGGGGAGGCGTGT
TGGCGTTAACCGCAGCCGCCGGGGAGAAGGACGGGGCTATTCAGCCAAAG
GCGGAGTCTTTGGCCACGGTGCTCACGCAGGCGCTGCAATCCGGGGACGA
GAGCTTGCTGGAGCAGTGCCTGTCTGTGGGGGAGCAGGGCATGATCGAGG
CCACCGTGGAGCGCCTGCCTTCTTCCAAGGTCTTGCAGTTCCTGCTCAGG
CGCTGCAATCCGGGGACGAGAGCTTGCTGGAGCAGTGCCTGTCTGTGGGG
GAGCAGGGCATGATCGAGGCCACCGTGGAGCGCCTGCCTTCTTCCAAGGT
CTTGCAGTTCCTGCTCAGGGTGGTGGCGAAGCTGGAGAAGCGCCCGAACC
GTGCGGCCGCGCTGGGGCGGTGGATACGCGCCCTGCTGTCGTGCCACCTG
GGGTACCTGGTGTCCGTGCCGGGGTTGCCGGACAAGCTGGCGTTGCTGCA
CCAGCTCATCGATCGCAGGGTGGCCTCGTTCCCCAAGCTGCTCCAGCTCC
ACGGCCGCCTCGACCTGCTTCTCGCACGCGCTAAGGCGGAGGCCAGCAGG
GTGGTGGCGAAGCTGGAGAAGCGCCCGAACCGTGCGGCCGCGCTGGGGCG
GTGGATACGCGCCCTGCTGTCGTGCCACCTGGGGTACCTGGTGTCCGTGC
CGGGGTTGCCGGACAAGCTGGCGTTGCTGCACCAGCTCATCGATCGCAGG
GTGGCCTCGTTCCCCAAGCTGCTCCAGCTCCACGGCCGCCTCGACCTGCT
TCTCGCACGCGCTAAGGCGGAGGCCAGCAGGGGGGGCGATGCGGGAGCAG
GGGCTATGGACAGACCGGAGTCCGTCTACAGGGAGGAGGATGACGAGGAG
GGAAGCGGTAAAGAAGACGAAGGGGGGGCGATGCGGGAGCAGGGGCTATG
GACAGACCGGAGTCCGTCTACAGGGAGGAGGATGACGAGGAGGGAAGCGG
TAAAGAAGACGAAGATAGCGAAGAGGACAGCGGCGAGGATGGGGAGGGAA
GTGGGGACCAAGACGACATGGATGAAGACGATGAGAGCGAAGATGATGAC
GAGGACGAGGAGGAGGCAGAGGAAGAATGAATAGCGAAGAGGACAGCGGC
GAGGATGGGGAGGGAAGTGGGGACCAAGACGACATGGATGAAGACGATGA
GAGCGAAGATGATGACGAGGACGAGGAGGAGGCAGAGGAAGAATGA
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