mRNA_L-elsbetiae_contig10040.90.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10040.90.1
Unique NamemRNA_L-elsbetiae_contig10040.90.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10040.90.1 vs. uniprot
Match: D7G031_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G031_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 1.230e-19
Identity = 45/56 (80.36%), Postives = 49/56 (87.50%), Query Frame = 1 
Query:  508 MCGASYTHVESSPGNGGSGTSGMLHHLFKKHPLIHAEIMKANPPSKNRKLEGAAAK 675
            +CGA+YTHVES PGNGGSGTSGMLHHLFKKHPLIHAEI++AN  SK RK EGA  K
Sbjct:    8 LCGATYTHVESRPGNGGSGTSGMLHHLFKKHPLIHAEIIRANSSSKMRKAEGAVVK 63
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10040.90.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G031_ECTSI1.230e-1980.36Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10040contigL-elsbetiae_contig10040:1013..5211 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size789
Cds size678
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10040.90.1prot_L-elsbetiae_contig10040.90.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10040 1013..5100 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815237.5392485-CDS-L-elsbetiae_contig10040:1012..11401622815237.5392485-CDS-L-elsbetiae_contig10040:1012..1140Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10040 1013..1140 -
1691682788.285754-CDS-L-elsbetiae_contig10040:1012..11401691682788.285754-CDS-L-elsbetiae_contig10040:1012..1140Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10040 1013..1140 -
1622815237.5515285-CDS-L-elsbetiae_contig10040:1435..15871622815237.5515285-CDS-L-elsbetiae_contig10040:1435..1587Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10040 1436..1587 -
1691682788.295771-CDS-L-elsbetiae_contig10040:1435..15871691682788.295771-CDS-L-elsbetiae_contig10040:1435..1587Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10040 1436..1587 -
1622815237.5641716-CDS-L-elsbetiae_contig10040:4702..51001622815237.5641716-CDS-L-elsbetiae_contig10040:4702..5100Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10040 4703..5100 -
1691682788.3047056-CDS-L-elsbetiae_contig10040:4702..51001691682788.3047056-CDS-L-elsbetiae_contig10040:4702..5100Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10040 4703..5100 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815237.574417-UTR-L-elsbetiae_contig10040:5100..52111622815237.574417-UTR-L-elsbetiae_contig10040:5100..5211Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10040 5101..5211 -
1691682788.3127751-UTR-L-elsbetiae_contig10040:5100..52111691682788.3127751-UTR-L-elsbetiae_contig10040:5100..5211Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10040 5101..5211 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10040.90.1

>prot_L-elsbetiae_contig10040.90.1 ID=prot_L-elsbetiae_contig10040.90.1|Name=mRNA_L-elsbetiae_contig10040.90.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=226bp
MADQSQVDTASASSQPPAPPSSQAPTQPLATPPSSQALGTGPPAPAVVLP
LPPQQHGGAGVVASAAAAATAAGLGQHQLYTPSGRKRKQRTSGVWRYFEQ
FTPAAPKGRNVRCTILVDAPADPALGVPQRSVMCGASYTHVESSPGNGGS
GTSGMLHHLFKKHPLIHAEIMKANPPSKNRKLEGAAAKVGGSATGNGKDS
SSSPPGTTAAAARPRARIGGGGGGDG
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mRNA from alignment at L-elsbetiae_contig10040:1013..5211-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10040.90.1 ID=mRNA_L-elsbetiae_contig10040.90.1|Name=mRNA_L-elsbetiae_contig10040.90.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4199bp|location=Sequence derived from alignment at L-elsbetiae_contig10040:1013..5211- (Laminarionema elsbetiae ELsaHSoW15)
TCCGCACCGGTCTCTTTCCCGACGCCCTTCCACACACCGCACCGGTCTCT
TTCCCGGGAACGAAGCCTCGGCCTCCGGCACACGGATCTTGCGTTTTGCT
GATTTTGCAACATGGCGGATCAGTCGCAGGTTGACACAGCGTCCGCATCA
TCTCAACCCCCAGCTCCGCCATCGTCTCAAGCCCCCACTCAACCATTGGC
TACTCCGCCATCGTCTCAAGCCCTTGGTACTGGTCCTCCTGCCCCTGCGG
TCGTCTTGCCCCTGCCACCCCAACAACATGGCGGTGCCGGTGTTGTGGCA
TCAGCGGCGGCGGCGGCGACGGCGGCGGGCCTTGGGCAGCATCAGCTGTA
CACTCCATCCGGGAGGAAGAGGAAGCAGAGGACGTCGGGGGTATGGCGGT
ATTTCGAGCAGTTCACACCGGCGGCTCCGAAAGGCCGGAACGTGCGCTGT
ACGATTCTAGTCGACGCCCCGGCTGACCCTGCGCTGGGAGTGCCGCAACG
CTCAGTTATGTGAGTTTTGCCTGCTGGGTTATGTGCATTCCATGGGACTG
GTGAACTTATACAGGAGGTCGCGGAGTTCGCTGCCCGGGGTCCCCTGCTC
CTTTTGGCGTTCGTTGTGTTGTCTCCACATTAAAAACGATTCCATTGTTT
GCAGGGGCGGGGAATGTCCAACGGAAAGCGTGGAGTCTGCACGGATCTAC
GTATGTTTGTATGATCGTTCAGCGGTGACAGTAGTACAGTAGTTTTAGCT
TTGGTTGGCAGCTCTCCGTAGTACAAATGGCGCCACCATCAGCCTAAGAT
ACGTAATTACTCCGTATGTAAAATAAGTATTCAAATATAAGAAACTTTCA
ACTTTCCATTTTGTAAGAATTTGAACATAGTCTATTGTACAAATCCGACG
TGCCCAGAGGGGGAGAACAAGAACCCTATTTAACCCGCAGATGAGATGCA
TTCCTGCCACCATGAAAATAACATACATACATATTTAATTGTATACACAC
TAGAGTCGGCGGCCGAAGATACGAACATCGCCGAGGGTTTGCGCGTGATG
GGGGCGGGACCCAAAGATCCAGGATCGATCTTCAAGATACCCCCCCCCAC
ACAGCAGCAGGATATCAGAGGATGGTGCGGCGGGCAGGGGCTGCCGATGA
TGTAAGGGCATGAAAAGGACTCGTGGGCATTGCGAATGGGATGCCAGCTG
GGCATAAGAACAAGAACCCGTGCTCGGTTTGGGCGGCCAGTAAGCCGCGA
GCCTCGGCAAAAAATAAGAGTTTCTTAAAAGGGGTTGCTGACAACCGATC
TTGGGGTTGGCTGGGTTTGAAAAAGACCGAACGAGCACCCCACAACCACA
CAGCAGATACACCAGACCAGTAGGGAAGGGTTGCGCAAGAAGAGAAGTGC
TGGTTCGCTCACCCAGCGGCGAGCGGGGCTGCTCTTTATATACGTATCAC
GTAGTTTACCACCCCCCCCCCCAACAGTCTGAAATCAGGATAAATATTAC
AGCAGTCTAATATCAAGTCAAAAGAGCCAAAACAGCGGGCGCTCAAATGA
GGTCTGCCTTGGTAAGTTAAGCAGTTTCGGGCATGGAATCACTAGAGCTA
ACCATGGAAAGGTCACGTGTGTATTGACGCGCTCAGATCTGCTGCTGGGG
CGGAGAGATCGAGAGTCAAAGCAGCGACCGAGAATCTCCGCAAATTGACC
GACACACCCTGTCTCCCACTGCCGTGCTCGCCGCCACGGACCCCAATCTC
CTGAACTGCGGGTCTACAGCAGTAGCTGACACCACCAGCTACTGCTGAGG
ACCCGCAGTTCAGGCGGTTACGGCCCGTGGCGGCAAGCACAGCCGCGACA
AACGTTTGTTATTGGTCAAATTTGCAGACAGTCCAGCGACTGCTGCGACC
TTCGATATCTCCGCTCAAGCAGCAGATCTGAGCGCGCCAACATACACGTG
ACTTCTCCATGGTTAGCTCTAGTGATTCCATGCCCGAAACTGCTTAACTT
TCGACGGGAAGTTGGTTTTCGTTATACTCGGCCTTGTTATCTTGATTTTA
GTGGGAAACTGCTTAACCACCGTTGTCAGCACCCCCTTAAGGCTGCACCA
CGCAGCACAGCTTTGAAATCTGGGGTAGGGGTTCCAGGAGAGAGCCCGTA
GAGATACTTGTTTTTTTTATGGCGGTTCTTTTCCGCCATCTCCCACAGTA
AATGCCGTAATCTCTCTCCAGCTGCCCTATAGAGTATCTCACCGCAAAAT
CGATTTTTGCGCTTCGAAACAAGAGCCGATACCAAAACTCCTCAGTCGGT
CCTTGGAGTTGGCTGTCTCAGGTAGATCTTACTGTTGGTATCAGAGCAGA
GAGCAATATGTACCACGGTCGATCGTTTTAATCCTAGTCTGCACCAAGAA
AACTACATTTTTGTTTGTCCGCAAAAGCGGGGCATGCGCGCTTGGGTAGA
CAGCAGCGAGGGTCGGCCATGGAGCACTGGAGGTCTTTGGAGACATGGTA
TTCGGCTGAGCAACCCTTATAAGACCCTCGGAGGAACATAGTCGGAGCAC
AGCAGGAGCGGGGCACAATAGCTTTCGATCTGGAGAACTTCGTGTTCTCA
AACCGTCTCACTACGCCCCCCTTTTTCGTAAACCTGGTCGGGTTTTGCTC
AACGAACAAAGGCACACGCGCCTTGCGCACCAGCCCAAACAGCAGACACA
CGAAGATAGCCAGGATGTTACCAGTCAAGAAAATGGGGCTGAAGACAGCA
GTCAAACGGATCCCGACCCCCATAGAAATTGCGGTGCCAAACACGTGTTC
TTAATGTACTGATTTCAAAGCGGAAGAAACCAGAACCAACAGTCTATTCC
CCGCAACTTCAACTACGTGGTGCACCCTTAAGTGGTGGCGTCATCTGTAC
CGAACAAGCGTTCTGAAGGGTCGGTACCTTCGAGTCCGTCTTATTTCTTT
CATTTTTCAGTACACTTTTTTTGGGGTAAGTTATCCTGTGACCACGGGAA
TCGACCGCGACAGTGGTGGATTAGTACGGACTCGTGGAGGTGTACTGGAT
AGAGAGTTCGGAACGGTTTTGAATGCGACACAACAACAACAACAACAACA
ACAACAACAACACAACATGTATGTATGTACACTCATGTCCCCCCGGAAAT
ATGAAAATAAGCAGTGAACACCCACCCCCAAGAAAAAACACTGAGACTGC
TCACGCTTTCAAAACCTGAAGTCAACACGTGATGGCAAAGGTGCCCATGA
CAAAAAGGGAATTTTCAGTTGTTGGCACTGCTGCTCATCGGGCGTTGTGT
GCGTCACAATGTATGTATGTACGTACCCGTGTACCGTAGGTGACATAAGA
TATGACACCCCCTGGGCCGAGATTGAAAGCTTGGTTACTCCGCAACGAAT
ACGATTCTAACCGCAAACGCCTCGTTTTCGGACAGCTCTCGACGAGATAT
TTCCAACGCCGCCCTTTTCGGGACTGTCGCTCTGCTTGCTACTGTGGAGT
ACTTGAGCTTTGAAAATCGGTCCAGGGGGTGTCTTATCTTATGTCATCTA
CGGTAGACGTCTCGTGCTTATCCCGACGGCCGGCCGCCGCTGTGCAACCT
ACTGCCGTAACTTCGTCTATCTAGGTGCGGAGCTTCGTACACCCACGTCG
AGTCGAGCCCCGGCAACGGAGGCTCTGGCACTTCCGGCATGCTGCACCAC
CTCTTCAAGAAGCACCCGCTCATCCACGCCGAGATCATGAAGGCTAATCC
CCCCTCCAAGAATCGGAAGCTGGAAGGTACGGCAATGTGCTGCTGTATTA
TTGTAAATTTAAATTACAGCGTACGTGCAAATACATGTACCTACGAAGTA
CGTCCGTCCCGGAAGTGTTATCATTGCTGGCTGCATTTCCAGTTTTGTTT
TCTACCTCACGTATTGCAGCGTGTCGAGGGGGGCGGAGGGTTCCAGACTG
TCTGTGTCTTGTCTGATCTATACATATATACATACGGTACATGTTTTTTC
CTTTCAATCACACCCTTGAAACCGTGGCGCGCGCCGGGTATCGGGGGTGC
CGTCGTTCTTTCTCTCGGCAGGCGCGGCAGCGAAGGTGGGGGGCTCCGCC
ACCGGGAACGGCAAAGACTCGTCGTCGTCTCCTCCCGGCACCACGGCGGC
GGCGGCCCGACCGAGGGCGCGCATCGGCGGCGGCGGCGGCGGGGATGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10040:1013..5211-

>mRNA_L-elsbetiae_contig10040.90.1 ID=mRNA_L-elsbetiae_contig10040.90.1|Name=mRNA_L-elsbetiae_contig10040.90.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1356bp|location=Sequence derived from alignment at L-elsbetiae_contig10040:1013..5211- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGGATCAGTCGCAGGTTGACACAGCGTCCGCATCATCTCAACCCCC
AGCTCCGCCATCGTCTCAAGCCCCCACTCAACCATTGGCTACTCCGCCAT
CGTCTCAAGCCCTTGGTACTGGTCCTCCTGCCCCTGCGGTCGTCTTGCCC
CTGCCACCCCAACAACATGGCGGTGCCGGTGTTGTGGCATCAGCGGCGGC
GGCGGCGACGGCGGCGGGCCTTGGGCAGCATCAGCTGTACACTCCATCCG
GGAGGAAGAGGAAGCAGAGGACGTCGGGGGTATGGCGGTATTTCGAGCAG
TTCACACCGGCGGCTCCGAAAGGCCGGAACGTGCGCTGTACGATTCTAGT
CGACGCCCCGGCTGACCCTGCGCTGGGAGTGCCGCAACGCTCAGTTATAT
GGCGGATCAGTCGCAGGTTGACACAGCGTCCGCATCATCTCAACCCCCAG
CTCCGCCATCGTCTCAAGCCCCCACTCAACCATTGGCTACTCCGCCATCG
TCTCAAGCCCTTGGTACTGGTCCTCCTGCCCCTGCGGTCGTCTTGCCCCT
GCCACCCCAACAACATGGCGGTGCCGGTGTTGTGGCATCAGCGGCGGCGG
CGGCGACGGCGGCGGGCCTTGGGCAGCATCAGCTGTACACTCCATCCGGG
AGGAAGAGGAAGCAGAGGACGTCGGGGGTATGGCGGTATTTCGAGCAGTT
CACACCGGCGGCTCCGAAAGGCCGGAACGTGCGCTGTACGATTCTAGTCG
ACGCCCCGGCTGACCCTGCGCTGGGAGTGCCGCAACGCTCAGTTATGTGC
GGAGCTTCGTACACCCACGTCGAGTCGAGCCCCGGCAACGGAGGCTCTGG
CACTTCCGGCATGCTGCACCACCTCTTCAAGAAGCACCCGCTCATCCACG
CCGAGATCATGAAGGCTAATCCCCCCTCCAAGAATCGGAAGCTGGAAGGT
GCGGAGCTTCGTACACCCACGTCGAGTCGAGCCCCGGCAACGGAGGCTCT
GGCACTTCCGGCATGCTGCACCACCTCTTCAAGAAGCACCCGCTCATCCA
CGCCGAGATCATGAAGGCTAATCCCCCCTCCAAGAATCGGAAGCTGGAAG
GCGCGGCAGCGAAGGTGGGGGGCTCCGCCACCGGGAACGGCAAAGACTCG
TCGTCGTCTCCTCCCGGCACCACGGCGGCGGCGGCCCGACCGAGGGCGCG
CATCGGCGGCGGCGGCGGCGGGGATGGGGCGCGGCAGCGAAGGTGGGGGG
CTCCGCCACCGGGAACGGCAAAGACTCGTCGTCGTCTCCTCCCGGCACCA
CGGCGGCGGCGGCCCGACCGAGGGCGCGCATCGGCGGCGGCGGCGGCGGG
GATGGG
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