mRNA_L-elsbetiae_contig10995.889.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10995.889.1
Unique NamemRNA_L-elsbetiae_contig10995.889.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10995.889.1 vs. uniprot
Match: A0A6H5JKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS3_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 1.390e-6
Identity = 23/32 (71.88%), Postives = 25/32 (78.12%), Query Frame = 3 
Query:  186 DTERMPKRDGEPGVDKPVREAIGCLTWLAAFT 281
            + E  PKRD EPGVDKPVR+AIGCL W A FT
Sbjct: 1009 NAELGPKRDDEPGVDKPVRQAIGCLMWPATFT 1040
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BLAST of mRNA_L-elsbetiae_contig10995.889.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 2.620e-6
Identity = 22/27 (81.48%), Postives = 23/27 (85.19%), Query Frame = 3 
Query:  201 PKRDGEPGVDKPVREAIGCLTWLAAFT 281
            PKRD EPGVDKPVR+AIGCL W A FT
Sbjct: 1567 PKRDDEPGVDKPVRQAIGCLMWPATFT 1593
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BLAST of mRNA_L-elsbetiae_contig10995.889.1 vs. uniprot
Match: A0A6H5JK49_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK49_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 3.540e-6
Identity = 23/36 (63.89%), Postives = 26/36 (72.22%), Query Frame = 1 
Query:  115 KVVRALYGVEQSGREWGNEAADTLIQNGCRSETASP 222
            KV RALYG++QSGREWG E AD LI+NGC      P
Sbjct:  426 KVERALYGLKQSGREWGFEVADALIENGCEQCRVDP 461
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BLAST of mRNA_L-elsbetiae_contig10995.889.1 vs. uniprot
Match: A0A6H5JUB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUB8_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 4.820e-6
Identity = 25/54 (46.30%), Postives = 33/54 (61.11%), Query Frame = 1 
Query:   61 PGGAGSRSTCSAPQRLDTKVVRALYGVEQSGREWGNEAADTLIQNGCRSETASP 222
            P G G +S       + TK  RA+YG++QSGR+WG  AADTL++NG     A P
Sbjct:  377 PAGCGDKS------HMITKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADP 424
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BLAST of mRNA_L-elsbetiae_contig10995.889.1 vs. uniprot
Match: A0A6H5L5Z2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5Z2_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 4.920e-6
Identity = 25/36 (69.44%), Postives = 27/36 (75.00%), Query Frame = 1 
Query:  115 KVVRALYGVEQSGREWGNEAADTLIQNGCRSETASP 222
            KV RALYG++QSGREWG EAADTLI NG     A P
Sbjct:  393 KVERALYGLKQSGREWGFEAADTLIANGYEQCRADP 428
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BLAST of mRNA_L-elsbetiae_contig10995.889.1 vs. uniprot
Match: A0A6H5JC05_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC05_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 8.620e-6
Identity = 24/33 (72.73%), Postives = 27/33 (81.82%), Query Frame = 1 
Query:  115 KVVRALYGVEQSGREWGNEAADTLIQNG---CR 204
            KV RALYG++QSGREWG EAAD LI+NG   CR
Sbjct:   76 KVERALYGLKQSGREWGFEAADALIENGYEQCR 108
[Close]
BLAST of mRNA_L-elsbetiae_contig10995.889.1 vs. uniprot
Match: A0A6H5L9H4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9H4_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 8.780e-6
Identity = 24/36 (66.67%), Postives = 27/36 (75.00%), Query Frame = 1 
Query:  115 KVVRALYGVEQSGREWGNEAADTLIQNGCRSETASP 222
            KV RALYG++QSGREWG EAAD LI+NG     A P
Sbjct:  333 KVERALYGLKQSGREWGFEAADALIENGYEQCRADP 368
[Close]
BLAST of mRNA_L-elsbetiae_contig10995.889.1 vs. uniprot
Match: A0A6H5JXU1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXU1_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 1.190e-5
Identity = 25/42 (59.52%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:   88 CSAPQRLDTKVVRALYGVEQSGREWGNEAADTLIQNG---CR 204
            CS+      K+ RALYG++QSGREWG EAAD LI+NG   CR
Sbjct:   67 CSSMSGKVVKIERALYGLKQSGREWGFEAADALIENGYEQCR 108
[Close]
BLAST of mRNA_L-elsbetiae_contig10995.889.1 vs. uniprot
Match: A0A6H5JNJ1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNJ1_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 1.200e-5
Identity = 25/44 (56.82%), Postives = 28/44 (63.64%), Query Frame = 1 
Query:  115 KVVRALYGVEQSGREWGNEAADTLIQNGCRSETASP------GW 228
            KV RALYG++QSGREWG EAAD LI+NG       P      GW
Sbjct:  402 KVERALYGLKQSGREWGFEAADALIENGYEQGRVDPCLPEGGGW 445
[Close]
BLAST of mRNA_L-elsbetiae_contig10995.889.1 vs. uniprot
Match: A0A6H5K164_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K164_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 1.250e-5
Identity = 25/54 (46.30%), Postives = 32/54 (59.26%), Query Frame = 1 
Query:   61 PGGAGSRSTCSAPQRLDTKVVRALYGVEQSGREWGNEAADTLIQNGCRSETASP 222
            P G G +S      R   K  RA+YG++QSGR+WG  AADTL++NG     A P
Sbjct:  503 PAGCGDKS------RKTLKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADP 550
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10995.889.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JKS3_9PHAE1.390e-671.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L175_9PHAE2.620e-681.48Uncharacterized protein n=9 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JK49_9PHAE3.540e-663.89Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JUB8_9PHAE4.820e-646.30Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L5Z2_9PHAE4.920e-669.44Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JC05_9PHAE8.620e-672.73Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L9H4_9PHAE8.780e-666.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JXU1_9PHAE1.190e-559.52Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JNJ1_9PHAE1.200e-556.82Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K164_9PHAE1.250e-546.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10995contigL-elsbetiae_contig10995:3074..4146 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-11_001720.2
Exons3
Model size283
Cds size240
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10995.889.1prot_L-elsbetiae_contig10995.889.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10995 3117..4146 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815314.8830457-UTR-L-elsbetiae_contig10995:3073..31161622815314.8830457-UTR-L-elsbetiae_contig10995:3073..3116Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10995 3074..3116 -
1691682833.1560886-UTR-L-elsbetiae_contig10995:3073..31161691682833.1560886-UTR-L-elsbetiae_contig10995:3073..3116Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10995 3074..3116 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815314.8942862-CDS-L-elsbetiae_contig10995:3116..31571622815314.8942862-CDS-L-elsbetiae_contig10995:3116..3157Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10995 3117..3157 -
1691682833.16916-CDS-L-elsbetiae_contig10995:3116..31571691682833.16916-CDS-L-elsbetiae_contig10995:3116..3157Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10995 3117..3157 -
1622815314.9042542-CDS-L-elsbetiae_contig10995:3476..35711622815314.9042542-CDS-L-elsbetiae_contig10995:3476..3571Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10995 3477..3571 -
1691682833.1772792-CDS-L-elsbetiae_contig10995:3476..35711691682833.1772792-CDS-L-elsbetiae_contig10995:3476..3571Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10995 3477..3571 -
1622815314.9139965-CDS-L-elsbetiae_contig10995:4042..41461622815314.9139965-CDS-L-elsbetiae_contig10995:4042..4146Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10995 4043..4146 -
1691682833.1852465-CDS-L-elsbetiae_contig10995:4042..41461691682833.1852465-CDS-L-elsbetiae_contig10995:4042..4146Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10995 4043..4146 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10995.889.1

>prot_L-elsbetiae_contig10995.889.1 ID=prot_L-elsbetiae_contig10995.889.1|Name=mRNA_L-elsbetiae_contig10995.889.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=80bp
MRSALLRWRSALKWKKQKQKPGGAGSRSTCSAPQRLDTKVVRALYGVEQS
GREWGNEAADTLIQNGCRSETASPGWTSL*
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mRNA from alignment at L-elsbetiae_contig10995:3074..4146-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10995.889.1 ID=mRNA_L-elsbetiae_contig10995.889.1|Name=mRNA_L-elsbetiae_contig10995.889.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1073bp|location=Sequence derived from alignment at L-elsbetiae_contig10995:3074..4146- (Laminarionema elsbetiae ELsaHSoW15)
ATGCGTTCCGCGCTGCTGAGATGGCGTTCCGCGCTGAAGTGGAAGAAGCA
GAAGCAGAAGCCTGGGGGCGCGGGGTCAAGATCGACGTGCTCCGCACCCC
AGAGGTAAGCCCCAACTCGCCAATTGGGCACAAACCTACTGATGTAGAGG
CTATCCCGATGTCGTACAAAGATGTGGAAAGATCTCAATACAGAGACTTG
TGGGAAAGGGCCATGCAGAAAGAGATGGACGGTCATAAGACTACGGGAAC
TTTCGCGGATGTAGACAAAGTACCCGACGGGCGCAAACCTATCAGTTCTA
AGTGGGTGTTCTCGTGGAAGGTTAGCGAGCAGGGACTGATTATGGACCCA
AGACCCGTATGGTTGCTCGTGGATTCTCTCAGATCCCCAACGTGGATTCA
CCACTATTCCTCTGCATGCCCCGTCCGCGGCGCCCATCAAGACCGTGTTG
GCTGTAGCCAATGAAAAAGGAAGCCTGTGTACCACTGGGATGTCACGCAA
GCGTACACCCACGCCACGCTCAAGGAAGAAAATTATATGAGGTACTCCCC
TGGTTGCGGTGATTTATCTGGGCAGGTTAGATACCAAGGTGGTGCGTGCA
CTTTATGGCGTGGAGCAAAGTGGACGTGAGTGGGGAAACGAGGCTGCCGA
TACTCTGATACAGAACGGATGTGAGCAGTGCAGAGCTGATCCGTGCATTT
TCCGCAAGATGGTAAACGGTGTTGTGGTGAGCACCATTGTGGTGTGTGTG
GACGACCTCATGTATGGGGGTTGCGAGAAACAGCGTACGGAGTTGCTTGC
TTCCCTGCAGAAGAAGTTTCCCATCAAGGACTTGGGAGAGTGCGCATGGT
ACGGCGGATGTGGGATAGAGAGCAACGCCGAGTTGGGCACAACCACCCTG
TCTCAGAAGGCTTACATTGCAGGACTGATGGAACGGTTTGACGTAACGAC
AACCTCCGCCACCCCTGCTACCCCCGGTGCTGTTCTAAGGCCGAAGCGAG
ACGGCGAGCCCGGGGTGGACAAGCCTGTGAGAGAGGCGATCGGGTGCTTG
ACGTGGCTAGCTGCGTTTACGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10995:3074..4146-

>mRNA_L-elsbetiae_contig10995.889.1 ID=mRNA_L-elsbetiae_contig10995.889.1|Name=mRNA_L-elsbetiae_contig10995.889.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=480bp|location=Sequence derived from alignment at L-elsbetiae_contig10995:3074..4146- (Laminarionema elsbetiae ELsaHSoW15)
ATGCGTTCCGCGCTGCTGAGATGGCGTTCCGCGCTGAAGTGGAAGAAGCA
GAAGCAGAAGCCTGGGGGCGCGGGGTCAAGATCGACGTGCTCCGCACCCC
AGAGATGCGTTCCGCGCTGCTGAGATGGCGTTCCGCGCTGAAGTGGAAGA
AGCAGAAGCAGAAGCCTGGGGGCGCGGGGTCAAGATCGACGTGCTCCGCA
CCCCAGAGGTTAGATACCAAGGTGGTGCGTGCACTTTATGGCGTGGAGCA
AAGTGGACGTGAGTGGGGAAACGAGGCTGCCGATACTCTGATACAGAACG
GATGTTAGATACCAAGGTGGTGCGTGCACTTTATGGCGTGGAGCAAAGTG
GACGTGAGTGGGGAAACGAGGCTGCCGATACTCTGATACAGAACGGATGC
CGAAGCGAGACGGCGAGCCCGGGGTGGACAAGCCTGTGAGCCGAAGCGAG
ACGGCGAGCCCGGGGTGGACAAGCCTGTGA
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