mRNA_L-elsbetiae_contig10987.885.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10987.885.1
Unique NamemRNA_L-elsbetiae_contig10987.885.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10987.885.1 vs. uniprot
Match: D7FPN5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPN5_ECTSI)

HSP 1 Score: 121 bits (304), Expect = 1.500e-34
Identity = 61/76 (80.26%), Postives = 68/76 (89.47%), Query Frame = 1 
Query:   10 FELFWKVFKSGLLATNAVTILHRQRFLRKYQLEEVDRSPSASAMKNQVVGLIAAAAYLRAPLIALNTLACVVAMFP 237
            F L WK+FK+GLLATNAVTILH+QRFLRKY+L+EVD SPSASAMKNQVVGLIAA AYLR PLI LN+L CV+AM P
Sbjct:    5 FNLLWKLFKAGLLATNAVTILHKQRFLRKYRLDEVDHSPSASAMKNQVVGLIAAVAYLRGPLIVLNSLTCVIAMLP 80
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BLAST of mRNA_L-elsbetiae_contig10987.885.1 vs. uniprot
Match: A0A835YX81_9STRA (Yos1-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX81_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 2.750e-16
Identity = 38/66 (57.58%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:   22 WKVFKSGLLATNAVTILHRQRFLRKYQLEEVDRSPSASAMKNQVVGLIAAAAYLRAPLIALNTLAC 219
            W +FK+GLL TNAV ILH++RFLR     E D +  +S +KNQ +GLI A AYLR PLIA+N L C
Sbjct:    5 WSLFKTGLLVTNAVAILHKERFLRPLGWAEPDPALGSSNLKNQAIGLINAVAYLRGPLIAINLLTC 70
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BLAST of mRNA_L-elsbetiae_contig10987.885.1 vs. uniprot
Match: K8ZAA6_NANGC (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8ZAA6_NANGC)

HSP 1 Score: 69.7 bits (169), Expect = 5.250e-14
Identity = 36/68 (52.94%), Postives = 50/68 (73.53%), Query Frame = 1 
Query:   22 WKVFKSGLLATNAVTILHRQRFLRKYQLEEVDRSPSASAMKNQVVGLIAAAAYLRAPLIALNTLACVV 225
            W ++KSGLL TN V +LHR+RFLRKY L+  + + + S ++NQVVGL+ A  YL+ PLIALN +  V+
Sbjct:    6 WSLYKSGLLFTNGVAVLHRKRFLRKYGLDVAEVADTTS-IRNQVVGLLNAVQYLKVPLIALNIVTVVI 72
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BLAST of mRNA_L-elsbetiae_contig10987.885.1 vs. uniprot
Match: A0A2P6UYX9_9CHLO (Immediate early response 3-interacting 1-like n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6UYX9_9CHLO)

HSP 1 Score: 57.8 bits (138), Expect = 2.870e-9
Identity = 30/69 (43.48%), Postives = 43/69 (62.32%), Query Frame = 1 
Query:   22 WKVFKSGLLATNAVTILHRQRFLRKY-----QLEEVDRSPSASAMKNQVVGLIAAAAYLRAPLIALNTL 213
            W + +  LL  N + +L+ +RFL KY     Q+      PS +A+K Q++GL+ AAAY+R PLI LNTL
Sbjct:    4 WTLLQGALLIMNGLAVLNNERFLEKYGWGFSQMGNNPMGPSPNALKYQIIGLLHAAAYMRVPLIVLNTL 72
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BLAST of mRNA_L-elsbetiae_contig10987.885.1 vs. uniprot
Match: E1ZJ94_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZJ94_CHLVA)

HSP 1 Score: 56.2 bits (134), Expect = 1.160e-8
Identity = 30/69 (43.48%), Postives = 44/69 (63.77%), Query Frame = 1 
Query:   22 WKVFKSGLLATNAVTILHRQRFLRKY-----QLEEVDRSPSASAMKNQVVGLIAAAAYLRAPLIALNTL 213
            W + +  LL +N + IL+ +RFL KY     QL      PS +A+K Q++G++ A+A+LR PLI LNTL
Sbjct:    4 WTLLQGVLLVSNGLAILNNERFLEKYGWGFSQLGNNPMGPSPNALKYQIIGMLHASAFLRVPLIVLNTL 72
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10987.885.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FPN5_ECTSI1.500e-3480.26Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YX81_9STRA2.750e-1657.58Yos1-like protein n=1 Tax=Tribonema minus TaxID=30... [more]
K8ZAA6_NANGC5.250e-1452.94Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A2P6UYX9_9CHLO2.870e-943.48Immediate early response 3-interacting 1-like n=1 ... [more]
E1ZJ94_CHLVA1.160e-843.48Uncharacterized protein n=1 Tax=Chlorella variabil... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10987contigL-elsbetiae_contig10987:5197..6026 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.5
Seed ortholog evalue5e-08
Seed eggNOG ortholog112098.XP_008608353.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Yos1-like
EggNOG OGs2E2PC@1,2S9WB@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionYos1-like
Ec32 orthologEc-16_001310.1
Exons2
Model size240
Cds size240
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815314.460567-CDS-L-elsbetiae_contig10987:5196..52931622815314.460567-CDS-L-elsbetiae_contig10987:5196..5293Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10987 5197..5293 +
1691682832.8669937-CDS-L-elsbetiae_contig10987:5196..52931691682832.8669937-CDS-L-elsbetiae_contig10987:5196..5293Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10987 5197..5293 +
1622815314.4704592-CDS-L-elsbetiae_contig10987:5883..60261622815314.4704592-CDS-L-elsbetiae_contig10987:5883..6026Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10987 5884..6026 +
1691682832.879825-CDS-L-elsbetiae_contig10987:5883..60261691682832.879825-CDS-L-elsbetiae_contig10987:5883..6026Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10987 5884..6026 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10987.885.1prot_L-elsbetiae_contig10987.885.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10987 5197..6026 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10987.885.1

>prot_L-elsbetiae_contig10987.885.1 ID=prot_L-elsbetiae_contig10987.885.1|Name=mRNA_L-elsbetiae_contig10987.885.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=80bp
MQLFELFWKVFKSGLLATNAVTILHRQRFLRKYQLEEVDRSPSASAMKNQ
VVGLIAAAAYLRAPLIALNTLACVVAMFP*
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mRNA from alignment at L-elsbetiae_contig10987:5197..6026+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10987.885.1 ID=mRNA_L-elsbetiae_contig10987.885.1|Name=mRNA_L-elsbetiae_contig10987.885.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=830bp|location=Sequence derived from alignment at L-elsbetiae_contig10987:5197..6026+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGCTCTTTGAACTGTTCTGGAAAGTGTTCAAGTCTGGTTTGTTGGC
TACGAACGCTGTTACCATTCTTCACAGGCAGCGCTTCCTAAGGAAATGTG
AGTGTCGAATCCAACAGGTACATCACACGTACCTGCCAGGCCTTCTTCAC
AACTCGCAGACGCCGAGTGCTCCGTAGTGCTTTGTGGTTTCTCTTCCGTT
TCAGCGATCACAGCGGTGGCCTATCGGTATCTGTTATCGGATGTTTGTAC
CCTCTGCATCTGCATCATCGAACAAAACTGCTGCCCAGGCACTTGGTACA
GGACACTATGCGGTGTTGGAACACCGACTGCAGGAGGCCCGCAAGCTACC
CGATGCCAGCATTAACCTACCCTCTGATCCTCTACGTACACTCGACCATC
TTAAGGCATCTTTTGTGCGTTTATGCAATCAACAGATAGTCGTCATTGTA
CGATAGAACATCGTCAGCAGACCCCGGCCGAACGTACACATACATAGATA
CCCCGCCGACCCTATTGCACGGCTTCTCCTCCTCTCCATCTGTTCCTTAC
AATAGCGCCCGGGCTTGGTTTAGATCGACTACAGGCAGTTCTCCATCTTA
TTCCCCTCCTCATATTTGCCCCATCATATTCACGCCATACTGACTGCTGT
GGTGCCTTCCTCGTTTCGTTTCAACTTGGTTTGGAAGACCAACTGGAGGA
GGTGGACCGCTCGCCGTCGGCTTCCGCGATGAAGAACCAGGTGGTCGGCC
TGATCGCCGCGGCGGCGTATCTCCGAGCCCCGCTGATCGCCCTCAACACC
CTCGCCTGCGTCGTAGCGATGTTTCCATGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10987:5197..6026+

>mRNA_L-elsbetiae_contig10987.885.1 ID=mRNA_L-elsbetiae_contig10987.885.1|Name=mRNA_L-elsbetiae_contig10987.885.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=480bp|location=Sequence derived from alignment at L-elsbetiae_contig10987:5197..6026+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGCTCTTTGAACTGTTCTGGAAAGTGTTCAAGTCTGGTTTGTTGGC
TACGAACGCTGTTACCATTCTTCACAGGCAGCGCTTCCTAAGGAAATATG
CAGCTCTTTGAACTGTTCTGGAAAGTGTTCAAGTCTGGTTTGTTGGCTAC
GAACGCTGTTACCATTCTTCACAGGCAGCGCTTCCTAAGGAAATACCAAC
TGGAGGAGGTGGACCGCTCGCCGTCGGCTTCCGCGATGAAGAACCAGGTG
GTCGGCCTGATCGCCGCGGCGGCGTATCTCCGAGCCCCGCTGATCGCCCT
CAACACCCTCGCCTGCGTCGTAGCGATGTTTCCATGAACCAACTGGAGGA
GGTGGACCGCTCGCCGTCGGCTTCCGCGATGAAGAACCAGGTGGTCGGCC
TGATCGCCGCGGCGGCGTATCTCCGAGCCCCGCTGATCGCCCTCAACACC
CTCGCCTGCGTCGTAGCGATGTTTCCATGA
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