mRNA_L-elsbetiae_contig1004.87.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1004.87.1
Unique NamemRNA_L-elsbetiae_contig1004.87.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig1004.87.1 vs. uniprot
Match: A0A6H5K2A3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2A3_9PHAE)

HSP 1 Score: 245 bits (625), Expect = 1.530e-71
Identity = 144/220 (65.45%), Postives = 147/220 (66.82%), Query Frame = 1 
Query:    1 EGEVSFKGGIRRMLDERRRRLSGGSDTSSDASSMTDEDLDVQFIRVEKELKLKTKELELARVEDELRLRKSGAWFVTGPAAGAVPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGPYKKTPRMTDEAEREGVKAMVKAIGEAFQRAKVRTEVSGKRDAVHHYMALPSNQASRFYLVRYLVKNDAEFAPG 660
            EGEVSFKGGIRRMLDERR RLSGGSDT SD SS TDEDLDV FIRVEKELKL+TKELELARVEDELRLRKS AWFV GPA GAVPA                                                              KKTPR TDEA+REGVKAMVKAIGEAFQRAKVRTEV+ KRD VHHYMALPSNQASRFYLVRYLVKNDAEFAPG
Sbjct:  878 EGEVSFKGGIRRMLDERRGRLSGGSDTPSDISSTTDEDLDVHFIRVEKELKLRTKELELARVEDELRLRKSDAWFVAGPAVGAVPATGSYGAAPASGAAVSKQPKQGRRLYK------------------------------------KKTPRTTDEAKREGVKAMVKAIGEAFQRAKVRTEVNDKRDGVHHYMALPSNQASRFYLVRYLVKNDAEFAPG 1061
[Close]
BLAST of mRNA_L-elsbetiae_contig1004.87.1 vs. uniprot
Match: D8LJ26_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ26_ECTSI)

HSP 1 Score: 166 bits (421), Expect = 9.330e-49
Identity = 118/167 (70.66%), Postives = 121/167 (72.46%), Query Frame = 1 
Query:   37 MLDERRRRLSGGSDTSSDASSMTDEDLDVQFIRVEKELKLKTKELELARVEDELRLRKSGAWFVTGPAAGAVPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGPYKKTPRMTDEAEREGVKAMVKAIGEAFQRAKV 537
            MLDERR RLSGGSDTSSDASS TDEDLDVQFIRVEKELKLKTKELE+ARVEDELRLRKSGAWFVTGPAAGAVPAXXXXXXXXXXXXXXXXX                                         RGPYKKT R TDEAERE VKAMVKA+GEAFQRAK+
Sbjct:    1 MLDERRLRLSGGSDTSSDASSTTDEDLDVQFIRVEKELKLKTKELEMARVEDELRLRKSGAWFVTGPAAGAVPAXXXXXXXXXXXXXXXXXTNIPARAAISSVPKSAAPVTGSADGTASASGVAVSKQLKQGRGPYKKTSRTTDEAEREEVKAMVKAVGEAFQRAKL 167
[Close]
BLAST of mRNA_L-elsbetiae_contig1004.87.1 vs. uniprot
Match: D8LKS3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKS3_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 1.260e-20
Identity = 49/57 (85.96%), Postives = 51/57 (89.47%), Query Frame = 1 
Query:    1 EGEVSFKGGIRRMLDERRRRLSGGSDTSSDASSMTDEDLDVQFIRVEKELKLKTKEL 171
            EGEVSF GGIRR LDERRRRL GGSD  SDASS TD+DLDVQFIRVEKEL+LKTKEL
Sbjct:    2 EGEVSFSGGIRRKLDERRRRLRGGSDNPSDASSTTDQDLDVQFIRVEKELELKTKEL 58
[Close]
BLAST of mRNA_L-elsbetiae_contig1004.87.1 vs. uniprot
Match: D8LBS5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBS5_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 3.420e-10
Identity = 31/34 (91.18%), Postives = 34/34 (100.00%), Query Frame = 1 
Query:  436 GPYKKTPRMTDEAEREGVKAMVKAIGEAFQRAKV 537
            GPYKKTPR+TDEAEREGV+AMVKAIGEAFQRAK+
Sbjct:   48 GPYKKTPRITDEAEREGVEAMVKAIGEAFQRAKM 81
[Close]
BLAST of mRNA_L-elsbetiae_contig1004.87.1 vs. uniprot
Match: A0A6H5JH42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH42_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 4.530e-6
Identity = 32/41 (78.05%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    1 EGEVSFKGGIRRMLDERRRRLSGGSDTSSDASSMTDEDLDV 123
            EGEVS    IRRMLDER RRLSGGS+T SDASS TDED DV
Sbjct:  280 EGEVSSNRDIRRMLDERPRRLSGGSNTPSDASSTTDEDRDV 320
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1004.87.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5K2A3_9PHAE1.530e-7165.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJ26_ECTSI9.330e-4970.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LKS3_ECTSI1.260e-2085.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LBS5_ECTSI3.420e-1091.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JH42_9PHAE4.530e-678.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1004contigL-elsbetiae_contig1004:13088..13864 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size663
Cds size663
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815237.3575768-CDS-L-elsbetiae_contig1004:13087..135371622815237.3575768-CDS-L-elsbetiae_contig1004:13087..13537Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1004 13088..13537 +
1691682788.1430109-CDS-L-elsbetiae_contig1004:13087..135371691682788.1430109-CDS-L-elsbetiae_contig1004:13087..13537Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1004 13088..13537 +
1622815237.368091-CDS-L-elsbetiae_contig1004:13651..138641622815237.368091-CDS-L-elsbetiae_contig1004:13651..13864Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1004 13652..13864 +
1691682788.156993-CDS-L-elsbetiae_contig1004:13651..138641691682788.156993-CDS-L-elsbetiae_contig1004:13651..13864Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1004 13652..13864 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1004.87.1prot_L-elsbetiae_contig1004.87.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1004 13088..13864 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1004.87.1

>prot_L-elsbetiae_contig1004.87.1 ID=prot_L-elsbetiae_contig1004.87.1|Name=mRNA_L-elsbetiae_contig1004.87.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=221bp
EGEVSFKGGIRRMLDERRRRLSGGSDTSSDASSMTDEDLDVQFIRVEKEL
KLKTKELELARVEDELRLRKSGAWFVTGPAAGAVPATGSSTDVAPMTGTA
ACATTVAAGAAVSSVPKSATPVTGCADGTAPASGAAVSKKPKQGRGPYKK
TPRMTDEAEREGVKAMVKAIGEAFQRAKVRTEVSGKRDAVHHYMALPSNQ
ASRFYLVRYLVKNDAEFAPGV
back to top

mRNA from alignment at L-elsbetiae_contig1004:13088..13864+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1004.87.1 ID=mRNA_L-elsbetiae_contig1004.87.1|Name=mRNA_L-elsbetiae_contig1004.87.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=777bp|location=Sequence derived from alignment at L-elsbetiae_contig1004:13088..13864+ (Laminarionema elsbetiae ELsaHSoW15)
GAGGGGGAAGTGTCTTTCAAGGGGGGCATCAGGAGAATGCTGGACGAGCG
ACGTCGCCGGCTCAGCGGGGGATCGGACACCTCCTCGGATGCCAGCAGCA
TGACCGACGAAGACCTTGACGTGCAGTTCATCCGAGTCGAGAAGGAGCTG
AAGTTGAAGACGAAGGAACTCGAGTTGGCGAGGGTGGAGGACGAACTCCG
CCTCCGCAAGTCTGGCGCATGGTTCGTGACCGGCCCCGCCGCCGGCGCCG
TACCTGCCACCGGCTCGTCTACTGATGTGGCACCCATGACTGGGACTGCT
GCTTGCGCTACAACCGTTGCTGCTGGCGCTGCTGTCTCGAGCGTACCCAA
GAGCGCCACACCCGTGACTGGCTGTGCAGATGGTACTGCACCCGCTTCTG
GCGCGGCTGTCTCGAAAAAGCCCAAGCAAGGCCGGGGCCCGTACAAGAAG
GTGAGCGTGTTTGTTCCTTTATATCATGAGAAGAGTTGGGGTTAGATATG
GGAACACTCAATACTTTGAGAAAAAAAGTACTAATGGTGTACAATACCGA
CGAATCAATTACAGACGCCTCGGATGACCGACGAGGCCGAACGCGAAGGG
GTGAAGGCGATGGTGAAGGCGATTGGCGAAGCCTTCCAGCGAGCCAAGGT
CAGGACCGAGGTCAGCGGCAAGAGAGACGCTGTTCATCACTACATGGCTT
TGCCCAGCAACCAAGCTTCGAGGTTTTATCTGGTTAGGTACTTGGTAAAG
AACGACGCCGAGTTCGCCCCAGGGGTA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1004:13088..13864+

>mRNA_L-elsbetiae_contig1004.87.1 ID=mRNA_L-elsbetiae_contig1004.87.1|Name=mRNA_L-elsbetiae_contig1004.87.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1326bp|location=Sequence derived from alignment at L-elsbetiae_contig1004:13088..13864+ (Laminarionema elsbetiae ELsaHSoW15)
GAGGGGGAAGTGTCTTTCAAGGGGGGCATCAGGAGAATGCTGGACGAGCG
ACGTCGCCGGCTCAGCGGGGGATCGGACACCTCCTCGGATGCCAGCAGCA
TGACCGACGAAGACCTTGACGTGCAGTTCATCCGAGTCGAGAAGGAGCTG
AAGTTGAAGACGAAGGAACTCGAGTTGGCGAGGGTGGAGGACGAACTCCG
CCTCCGCAAGTCTGGCGCATGGTTCGTGACCGGCCCCGCCGCCGGCGCCG
TACCTGCCACCGGCTCGTCTACTGATGTGGCACCCATGACTGGGACTGCT
GCTTGCGCTACAACCGTTGCTGCTGGCGCTGCTGTCTCGAGCGTACCCAA
GAGCGCCACACCCGTGACTGGCTGTGCAGATGGTACTGCACCCGCTTCTG
GCGCGGCTGTCTCGAAAAAGCCCAAGCAAGGCCGGGGCCCGTACAAGAAG
GAGGGGGAAGTGTCTTTCAAGGGGGGCATCAGGAGAATGCTGGACGAGCG
ACGTCGCCGGCTCAGCGGGGGATCGGACACCTCCTCGGATGCCAGCAGCA
TGACCGACGAAGACCTTGACGTGCAGTTCATCCGAGTCGAGAAGGAGCTG
AAGTTGAAGACGAAGGAACTCGAGTTGGCGAGGGTGGAGGACGAACTCCG
CCTCCGCAAGTCTGGCGCATGGTTCGTGACCGGCCCCGCCGCCGGCGCCG
TACCTGCCACCGGCTCGTCTACTGATGTGGCACCCATGACTGGGACTGCT
GCTTGCGCTACAACCGTTGCTGCTGGCGCTGCTGTCTCGAGCGTACCCAA
GAGCGCCACACCCGTGACTGGCTGTGCAGATGGTACTGCACCCGCTTCTG
GCGCGGCTGTCTCGAAAAAGCCCAAGCAAGGCCGGGGCCCGTACAAGAAG
ACGCCTCGGATGACCGACGAGGCCGAACGCGAAGGGGTGAAGGCGATGGT
GAAGGCGATTGGCGAAGCCTTCCAGCGAGCCAAGGTCAGGACCGAGGTCA
GCGGCAAGAGAGACGCTGTTCATCACTACATGGCTTTGCCCAGCAACCAA
GCTTCGAGGTTTTATCTGGTTAGGTACTTGGTAAAGAACGACGCCGAGTT
CGCCCCAGGGGTAACGCCTCGGATGACCGACGAGGCCGAACGCGAAGGGG
TGAAGGCGATGGTGAAGGCGATTGGCGAAGCCTTCCAGCGAGCCAAGGTC
AGGACCGAGGTCAGCGGCAAGAGAGACGCTGTTCATCACTACATGGCTTT
GCCCAGCAACCAAGCTTCGAGGTTTTATCTGGTTAGGTACTTGGTAAAGA
ACGACGCCGAGTTCGCCCCAGGGGTA
back to top