mRNA_L-elsbetiae_contig10948.853.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10948.853.1
Unique NamemRNA_L-elsbetiae_contig10948.853.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10948.853.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10948contigL-elsbetiae_contig10948:1067..5519 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons4
Model size375
Cds size228
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10948.853.1prot_L-elsbetiae_contig10948.853.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10948 1067..2439 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815311.9315298-CDS-L-elsbetiae_contig10948:1066..11201622815311.9315298-CDS-L-elsbetiae_contig10948:1066..1120Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10948 1067..1120 -
1691682831.221772-CDS-L-elsbetiae_contig10948:1066..11201691682831.221772-CDS-L-elsbetiae_contig10948:1066..1120Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10948 1067..1120 -
1622815311.942086-CDS-L-elsbetiae_contig10948:1859..19041622815311.942086-CDS-L-elsbetiae_contig10948:1859..1904Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10948 1860..1904 -
1691682831.2306485-CDS-L-elsbetiae_contig10948:1859..19041691682831.2306485-CDS-L-elsbetiae_contig10948:1859..1904Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10948 1860..1904 -
1622815311.9512286-CDS-L-elsbetiae_contig10948:2310..24391622815311.9512286-CDS-L-elsbetiae_contig10948:2310..2439Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10948 2311..2439 -
1691682831.2387927-CDS-L-elsbetiae_contig10948:2310..24391691682831.2387927-CDS-L-elsbetiae_contig10948:2310..2439Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10948 2311..2439 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815311.9608903-UTR-L-elsbetiae_contig10948:2439..25261622815311.9608903-UTR-L-elsbetiae_contig10948:2439..2526Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10948 2440..2526 -
1691682831.2473967-UTR-L-elsbetiae_contig10948:2439..25261691682831.2473967-UTR-L-elsbetiae_contig10948:2439..2526Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10948 2440..2526 -
1622815311.970043-UTR-L-elsbetiae_contig10948:5461..55191622815311.970043-UTR-L-elsbetiae_contig10948:5461..5519Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10948 5462..5519 -
1691682831.2643394-UTR-L-elsbetiae_contig10948:5461..55191691682831.2643394-UTR-L-elsbetiae_contig10948:5461..5519Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10948 5462..5519 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10948.853.1

>prot_L-elsbetiae_contig10948.853.1 ID=prot_L-elsbetiae_contig10948.853.1|Name=mRNA_L-elsbetiae_contig10948.853.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=76bp
MTVPTAWWVGLLMSITGALVDANTKVKYDYTLIGCSSDNIKDRVLPVGPY
KASPMSAEICHAYCLGENWENFKYFG
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mRNA from alignment at L-elsbetiae_contig10948:1067..5519-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10948.853.1 ID=mRNA_L-elsbetiae_contig10948.853.1|Name=mRNA_L-elsbetiae_contig10948.853.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4453bp|location=Sequence derived from alignment at L-elsbetiae_contig10948:1067..5519- (Laminarionema elsbetiae ELsaHSoW15)
AGCCCACTTCAGCCGCCCGCTTGCTCCTTTATCAACCCTTCGAAGGAAGC
TGAGAAACGTGAGTTAAAACATTGCAGTTTAGAGATGCCTGCTATTTAAC
AGCAGCAGTGGTTGGGCCCGCCCCACACTACTCATTTGTCCTAAATAGTA
GACTAGATAGCCTAGAGGATGGTGTGAACCATATTGTGTTCTCTGCTTGA
TAGACTAGTATATACTTGTATCATACTTGTGTGCATTACATTTGTGCACA
TACATCGTGGAAGCGTGTGTGAGGTGCCGGTCGATGTACTACATGTGTAT
CTATATGTAGACTTCGCAGCCTCCAAAGGTTGGGACTTTATCGGGGAATA
AAACATATATATCTAGATACATCATCTTCGATAGATAATAATCTAGATAC
GGCCGATACGGCCGAACGTCATGGCGTCAGCATCGTCTGAAGCTACATCC
CGATCGTGTACGTAAGAGCGAGAGAGGGCGTGACTAGTGGAGGCTGGAGG
GGGAATGCAGCGATGCTTGGTGAATTGGTACCACACTGAATTGGGGACGG
TCCGGGAGCGCGAAAGTGTTCGCCTAAACCAGGTGCAATATCTAATAGTC
GATTCCTCCTGGGGGGCTTTTTGTCTCAAAAGGCTGAACGGAAACGGCCG
CCAGCAGGTTTTTCTAAAAAAAGCTCCGCAATCAATCTCAATTAATCAAA
ACCCCATGAGTTCATGACTGCCCACGAGTTGAGTGTCCGAAATTGATCAG
CCTGTTGGGAGAAGGCAAGATAGAGAAGAAGAGAGCAAGCGAGAGCTGTT
AACCCACTGAGATAGAGAGAGGAGGCAAAGAGTAGAAGACAGAGGGGCAG
AGAGACAGAGATCCGCCATCGGTTGATGCGTGGAGAACACCAAAGAAGCT
AACCGTCACTTTTCAGTCAAGACGACTCATTTTGATCCATTGTCAAAAAC
AAAGCATTGGTCAGAGAGAGACCGCATAGGCAAAAAGGGGCACCTTGAGG
GTAAGAATGGAGACAACTCTCAAGAGAGAATAGAGCGATAGACTGGAGGA
AGAGAGAGAGTTGTGCACACATCTAACGGCGCTATAATGGGAGTGGCGTA
TGTAGCGCAACGCTGACCGATCAATAGACTATCTATGACTCACGGCGGTG
TGATCGAGAAACCTATGAACCCCTCTCTCACCGCCGCCCCGACTCAAAAG
AAAGGTAAAACATCAGCACAACGTGTGGCTGATGGTGCTGTTTCAGGGAA
TGTAGTATGCGGTGTACACGATTTCCCGTGAATGAAATTATGTATGTATG
ATATATCTACATATCTATAGATATAATATATATTATATGTACATCATACA
TATGTACATAATTTCATTATATCTAGATGTGTTTCTCTTGTACGTACATG
GAAATCTGGGTAGTATTCCGTATGAAACGAACATGTGTACATACTAAATA
GGGGAAGAGACAAGGCCCCCCGGCCAAAAGCGGTCGCGAGAGCCCCAATG
ACCAGTGTACAGGGGCGTAGGAAGTAGGTTGCACAAGGAAAGAAAAAATG
TAAACACGAAAAGAGTAGTGGAGGAAGGAATGTCAATGACACCACAGAAC
AACAGAAAGGGGAAGGAAGTGGAAGGACCGAAGCCGCGCGAGGTGCGATT
AACGAAACTTAACTGCAGTTGGTTGCGCCGCGTCAGCCCGCCAAATGACT
GCGTGTGCACGGTGAACACAAATTTGGGGTTGTCTACGAGAAGCCGCGAA
TATAGATGCACTTGATGTCGCCTGCACAACAATTAGGAAAAGACAGGGAG
GGATCGTGGAAGAAGAATGAATGGTAGGAAAGCAGAGCTTACATTCGTGG
GACAGACATGCATGCGTGGTGGCATCGTGAGTTCGCGATCGTGCGATAGT
ACATGGACCAAATCCCACAAAAAAAAATTGATTAGTCTATCTAGATATAG
TATAGTCTTATGGTTTCGTCGCACATGTTCAGTGGCTGTAGAGGCGATCA
CGACTAATAGACAGGATGGCGGTAAGGTTATACGATGGCTAAGTTGCACA
GATTGCAACGCATTCGCGCAAGACGTTGTGCACTAGAAGTTAAGGGATTA
TTTGTATGTCATCTGACCGTAACAGTTGTTGTGTTGTATTCGGCGGTCGC
GGACCTCCGAGAGCACAGCAGTGCTACAAGCAGTGTTGATGTGTGCCTCT
GAAGTAATACTCATCGTCGAACGTGCTCATGGCGTAAGGATCCAGAGCTG
ATTCGGAAGTTGAATATCGTTCACTATCCATGCAAGTGCATCTGAAAATA
AGTGTATGGAAATGGGATGTGTGAAGGCGAATCGTGAGGCAAAGAGCGCA
GCAGGTGGTCTGTCGCATTGGACAAAATACGTGTATTGTGCAGCGCGATA
GCTCTGTATGATGGTAAGATGTACGAATAGTTATCGAACGCGTCAAGTTG
AAGGGAGCATACGTATCTGGATGTTGTTGGTGACTGTAAATGAAGGAAGT
GTTGTCAGCATGTGTAACAACGGTGTGCCCAGCAAGGACATGGCGCAAAC
AAGAAAGTGAAAAATTATAGATATATACCATAGATAGTTACTATTTTCTA
GAAGTGTGGCGTAAGACGACATTCTGTGAGTACTAAGTTAGCAGGATGTA
GCGCTAAAAGCGGAAACTTGGCGACCGATTGCAGAGATAGAGTGATCTAT
CAAAGGCGCAATATTTCCCAGATACCTCACCGGGCCCCCCACTGTAGTAG
TAGCAGTCTAAGTTGTTTTGTCTCGAATTCGATTTCCTTTGAAAGGCACA
CAGCTTACGTTCTATCTGTCCGGCACTTCGTTTCTGATAAGAGACCGCGT
TTGTCTGTGATCTCTCTACCTAGTCTAGATACCTAACCTAACCATAAGAT
TTGCGGATATTCAACTATTGAGTGACTGTTCGGCGTCTCGCTCCCCCCCT
CGCTCTCTTCTTTCTCTCCTCCCTAACTCGATCGTCACGGCAGACAGAGA
GCAGCCACCGTGCAGGAATAACAACACGAGGGTACATATTCTGAGGAGTA
TCTAGATCGAGAAAGATCTACCTAATCGTGATGACAGTGCCTACGGCATG
GTGGGTGGGACTCCTGATGAGCATAACCGGTGCTCTCGTCGATGCCAACA
CGAAAGTGAAATACGACTACACGTTGATTGGCTGCAGCTCGGACAACATA
AAGGATCGGGTGAGAAAGATGGGGCCGGTGTATGGCGTCGTCTGGTAGCA
GTGAAGGTAGTGGTGGTGGCTACAATATGCTCGTAGCCTGTAAGAAATAA
AGCCGTGTCTACCAGCAGCTACATACGGCGGCAGTAATGCCGTGGTCGAT
TCGGTTTAGTAACCAAAAACGATAGAATTCTAGACTTCACCAAAACGCCG
ACGGTAAGAAATGCTGCGCATACAGGTCTATATATCTATATATATCTAGA
CTAGTTGAAATGAACGATTTCTCAGCTTGTACCTCCGGCAATGCTTGGCC
GACAACGGTCTCACTAACTGAACCGGCCCTGACATACGAAACTACCGATA
CATAAGTCATGTGTGTTGAGTGTTCGTGTGTCTGTTCGGCGGCGCGCTTC
GGGTGTTGACCGCAGGTCCTGCCGGTGGGCCCGTACAAGGCCAGCCCCAT
GTCTGCAGAGGTGGGTTGGTTTCAGATTGACTCAGGAGGCAGGGGTCTAT
CGCTCACATGCCGGTTGTTGTAGCCATCACATTTAACCCATTGGGACGCT
ACTTGTGCAGGTGCAAGAAAAACTTGCTTTGAGGGTGTTTGCTGGTGCCG
ATTATCTAGTTGAGAAACAAATGATTGGACATCACGAGAGGAAAGCCGCA
GAACCAACAAACGACACAGATAGGGGGCCACAACCAGCTTTCTACGCTTT
TACTCTCAGTCTCATTCCCAGATCTGCCCGGAATAAGATGTTCCATATTT
CAGAGATATATGATACTGCCTTTAGTTGGTGCGAACAAACTACAGCGAAT
CGCATGAATGTCGAATAATTTTTATGTTGGGTGTACGTGTACCGTACGAC
GCAGAAAGCGCTTTAGGGTACACTTGAAGGGATCCTTGCCAACGTGAGCT
ATAGTACATGTACCTTTAATCTGAACAACTTGTTTTTAGTAACAACACCA
CTTGAGGGGATCCTTGCCAACGTGAGCTATAGTACATGTACCTTTGATCT
CTTATGATGAACAACTTGTTTTAGTAACAACACCAATCCTCCACACGCGA
CATGCCAGCACTACTTCCACCATTACCATCTGTTCCATGCCCACCTCTCC
TTTCCTTCACCAACCGGGTAGTCTGCATAATTGCAAAATATCGAAAATAT
TTGTTGATCGCATGATGAGCTATGTTCTTCCTGTTGTATGCGCGCGTAGA
TCTGTCATGCCTACTGCTTGGGCGAGAACTGGGAAAATTTTAAGTACTTC
GGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10948:1067..5519-

>mRNA_L-elsbetiae_contig10948.853.1 ID=mRNA_L-elsbetiae_contig10948.853.1|Name=mRNA_L-elsbetiae_contig10948.853.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=456bp|location=Sequence derived from alignment at L-elsbetiae_contig10948:1067..5519- (Laminarionema elsbetiae ELsaHSoW15)
ATGACAGTGCCTACGGCATGGTGGGTGGGACTCCTGATGAGCATAACCGG
TGCTCTCGTCGATGCCAACACGAAAGTGAAATACGACTACACGTTGATTG
GCTGCAGCTCGGACAACATAAAGGATCGGATGACAGTGCCTACGGCATGG
TGGGTGGGACTCCTGATGAGCATAACCGGTGCTCTCGTCGATGCCAACAC
GAAAGTGAAATACGACTACACGTTGATTGGCTGCAGCTCGGACAACATAA
AGGATCGGGTCCTGCCGGTGGGCCCGTACAAGGCCAGCCCCATGTCTGCA
GAGGTCCTGCCGGTGGGCCCGTACAAGGCCAGCCCCATGTCTGCAGAGAT
CTGTCATGCCTACTGCTTGGGCGAGAACTGGGAAAATTTTAAGTACTTCG
GGATCTGTCATGCCTACTGCTTGGGCGAGAACTGGGAAAATTTTAAGTAC
TTCGGG
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