mRNA_L-elsbetiae_contig1094.848.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1094.848.1
Unique NamemRNA_L-elsbetiae_contig1094.848.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1094.848.1 vs. uniprot
Match: A0A6H5JJS4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJS4_9PHAE)

HSP 1 Score: 501 bits (1290), Expect = 3.570e-167
Identity = 253/324 (78.09%), Postives = 275/324 (84.88%), Query Frame = 1 
Query:    1 QRVRRDNAGAKGKIPSQRESLRTIAAACTWTKVFGTPEGVVPACPRPRPAKGEEMYDPQATMILTPELRQTFVALWVEGDGNCFWPSLARALWGTDKYWRQLKLAVLAWSAVNVEALVGKGGALFENG--IHYTEEIHGKHVYRGPNGEIDHTRDDYASMLLETTAKFSGNKQWGGSLAGVLFAERTGLVLKLPHPFDMRARIKADASGAAPTGTASYGGRS-DQFGDNRLSLLKVPTGDRKEILLRGVSGELDIVVEEIAITIVRGTSAVVGDESLFDIPVIEADTNLEPLNHFAAIVCADSDVHVRRPFPMSKAGPPLHTKF 963
            QR RR+NAGAKG+IPSQRE LR IAA CTW KVFGTPEGVVP   RP   KG+EMYDP+ATMILTPELR+TFVALWVEGDGNCFW S+A+ALWGTD+YWRQLKLAVLAWSAVNVEALVG+GGALF     IHY +EIH KH+YRGP+G++DH  DD ASMLLE+ AKFS N+QWGG LAGVLF ERTGLVLK+PHPFDMRARI+AD SGAA   TASYGG S D+FGD+R S  KVPT  RKEI+LRGVS E DIVVEEIAIT+    SAVVGD SL DIPVIEADTNL  LNHFAAIVCAD DVHVRRPFPMSKAGPPLH KF
Sbjct:   33 QRARRENAGAKGRIPSQREYLRAIAAECTWPKVFGTPEGVVPTVARP--GKGQEMYDPKATMILTPELRKTFVALWVEGDGNCFWRSMAKALWGTDEYWRQLKLAVLAWSAVNVEALVGEGGALFGRAGIIHYDDEIHAKHIYRGPDGKVDHRLDDDASMLLESIAKFSANRQWGGCLAGVLFTERTGLVLKMPHPFDMRARIRADTSGAAAKATASYGGGSEDEFGDHRYSFTKVPTAGRKEIILRGVSDEEDIVVEEIAITMASYDSAVVGDGSLSDIPVIEADTNLNHLNHFAAIVCADPDVHVRRPFPMSKAGPPLHAKF 354
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BLAST of mRNA_L-elsbetiae_contig1094.848.1 vs. uniprot
Match: A0A6H5K454_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K454_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 3.580e-25
Identity = 82/255 (32.16%), Postives = 125/255 (49.02%), Query Frame = 1 
Query:  205 RQTFVALWVEGDGNCFWPSLARALWGTDKYWRQLKLAVLAWSAVNVEALVGKGGALFENGIHYTEEIHGKHVYR------GPNGEIDHTRDDYASMLLETTAKFSGNKQWGGSLAGVLFAERTGLVLKLPHPFDMRARIKADASGAAPTGTASYGGRSDQFGDNRLSLLKVPTGDRKEILLRGVSGELDIVVEEIAITIVRGTSAVVGDESLFDIPVIEADTNLEPLNHFAAIVCADSDVHVRRPFPMSKAGPPL 951
            ++ +VALWV GDGNC W SLA+ LW +D+YW QLKL VLAW+A + E LV +G  L +  +H++++IH    Y       G    +  T    + MLL + A    +  WGG    +L ++   + +KL  P D+  R K D S A P      G + D+  D RLS   +       + ++G  G   +    + +T   G ++V   ++L +   +   T      HFAA+   D       PFP+ +A PPL
Sbjct:    3 KEGWVALWVRGDGNCCWRSLAKCLWESDEYWSQLKLVVLAWAAAHAEELVSEGRVLSDFSLHFSDDIHAGLGYAYSATCVGAAPSVAQT----SRMLLASVAYDCEDTVWGGDFTLLLASQALKITVKLLSPNDVMVR-KRDESSATPGTIRGAGRKGDKVDDTRLSQTFLADDAVSCLHIQG--GGRMVAEATVVLTSCTGQASVGELDNLVE---VTKSTACPRGVHFAAVSKKDRSTP---PFPLVRAAPPL 244
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1094.848.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JJS4_9PHAE3.570e-16778.09SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K454_9PHAE3.580e-2532.16SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1094contigL-elsbetiae_contig1094:25385..26606 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size964
Cds size963
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815311.6525724-CDS-L-elsbetiae_contig1094:25385..261861622815311.6525724-CDS-L-elsbetiae_contig1094:25385..26186Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1094 25386..26186 -
1691682831.085726-CDS-L-elsbetiae_contig1094:25385..261861691682831.085726-CDS-L-elsbetiae_contig1094:25385..26186Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1094 25386..26186 -
1622815311.6644628-CDS-L-elsbetiae_contig1094:26444..266061622815311.6644628-CDS-L-elsbetiae_contig1094:26444..26606Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1094 26445..26606 -
1691682831.0941203-CDS-L-elsbetiae_contig1094:26444..266061691682831.0941203-CDS-L-elsbetiae_contig1094:26444..26606Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1094 26445..26606 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1094.848.1prot_L-elsbetiae_contig1094.848.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1094 25386..26606 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1094.848.1

>prot_L-elsbetiae_contig1094.848.1 ID=prot_L-elsbetiae_contig1094.848.1|Name=mRNA_L-elsbetiae_contig1094.848.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=321bp
QRVRRDNAGAKGKIPSQRESLRTIAAACTWTKVFGTPEGVVPACPRPRPA
KGEEMYDPQATMILTPELRQTFVALWVEGDGNCFWPSLARALWGTDKYWR
QLKLAVLAWSAVNVEALVGKGGALFENGIHYTEEIHGKHVYRGPNGEIDH
TRDDYASMLLETTAKFSGNKQWGGSLAGVLFAERTGLVLKLPHPFDMRAR
IKADASGAAPTGTASYGGRSDQFGDNRLSLLKVPTGDRKEILLRGVSGEL
DIVVEEIAITIVRGTSAVVGDESLFDIPVIEADTNLEPLNHFAAIVCADS
DVHVRRPFPMSKAGPPLHTKF
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mRNA from alignment at L-elsbetiae_contig1094:25385..26606-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1094.848.1 ID=mRNA_L-elsbetiae_contig1094.848.1|Name=mRNA_L-elsbetiae_contig1094.848.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1222bp|location=Sequence derived from alignment at L-elsbetiae_contig1094:25385..26606- (Laminarionema elsbetiae ELsaHSoW15)
CAGCGGGTACGACGAGATAACGCTGGCGCGAAAGGAAAAATCCCAAGTCA
GAGGGAGTCCCTAAGAACTATCGCTGCGGCTTGCACGTGGACGAAGGTGT
TCGGCACCCCGGAGGGAGTGGTGCCGGCGTGTCCGCGGCCCCGGCCAGCG
AAGGGGGAAGAGGTACGATGTAAGAGCAGAGCGGCGGGTGGGGCCGGGTG
GAGGAACCGCGTGTTTATGGGTGTCTGTAGGGTCGGGAGGGTGTTCAGGT
CGATTATATACTGCCACGCGTAGGTGTTGGGTTGGTGTTGAACCAACCAA
AGCCGCCACTCTTTGGTTTGCACGAGATAATGTCAACATTCCAACCTTGT
TCTGACCGTGAGCACCAAGAGGGCTGATCTGTCGTGTACTTGGTTTGAAC
GCACGCCTCTTTGTGCGCAGATGTATGACCCGCAGGCGACCATGATCCTC
ACACCGGAGTTGCGGCAGACGTTTGTGGCGTTGTGGGTCGAGGGCGACGG
CAATTGCTTTTGGCCGTCTTTGGCCAGGGCGCTGTGGGGTACAGATAAGT
ACTGGCGCCAGCTGAAGCTCGCAGTACTTGCGTGGAGTGCTGTAAACGTC
GAGGCTCTGGTCGGGAAGGGAGGGGCCCTTTTTGAGAACGGTATCCACTA
CACAGAAGAGATTCATGGAAAGCATGTCTACCGCGGCCCCAATGGGGAAA
TTGATCACACGCGTGATGACTACGCGTCTATGCTCCTGGAGACTACTGCG
AAGTTTTCCGGAAACAAACAATGGGGTGGGAGTCTTGCCGGCGTTTTGTT
TGCTGAAAGAACTGGCCTAGTGTTGAAGCTGCCGCATCCTTTTGACATGC
GGGCAAGGATCAAGGCTGACGCGAGCGGTGCGGCGCCTACTGGAACGGCA
AGCTATGGTGGTCGTAGCGACCAGTTCGGCGACAACCGATTATCGTTGCT
GAAAGTACCGACAGGAGACCGTAAGGAGATCCTGTTACGTGGAGTTAGCG
GTGAGCTAGACATTGTGGTGGAAGAGATAGCCATCACAATCGTGCGCGGC
ACCAGCGCGGTGGTCGGAGACGAAAGCCTCTTTGACATTCCCGTCATAGA
GGCTGATACAAATCTTGAGCCTTTGAATCACTTCGCGGCGATAGTGTGCG
CAGACTCGGACGTTCACGTCAGGCGTCCGTTCCCGATGAGCAAAGCTGGG
CCGCCGCTTCACACGAAGTTTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1094:25385..26606-

>mRNA_L-elsbetiae_contig1094.848.1 ID=mRNA_L-elsbetiae_contig1094.848.1|Name=mRNA_L-elsbetiae_contig1094.848.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1926bp|location=Sequence derived from alignment at L-elsbetiae_contig1094:25385..26606- (Laminarionema elsbetiae ELsaHSoW15)
CAGCGGGTACGACGAGATAACGCTGGCGCGAAAGGAAAAATCCCAAGTCA
GAGGGAGTCCCTAAGAACTATCGCTGCGGCTTGCACGTGGACGAAGGTGT
TCGGCACCCCGGAGGGAGTGGTGCCGGCGTGTCCGCGGCCCCGGCCAGCG
AAGGGGGAAGAGCAGCGGGTACGACGAGATAACGCTGGCGCGAAAGGAAA
AATCCCAAGTCAGAGGGAGTCCCTAAGAACTATCGCTGCGGCTTGCACGT
GGACGAAGGTGTTCGGCACCCCGGAGGGAGTGGTGCCGGCGTGTCCGCGG
CCCCGGCCAGCGAAGGGGGAAGAGATGTATGACCCGCAGGCGACCATGAT
CCTCACACCGGAGTTGCGGCAGACGTTTGTGGCGTTGTGGGTCGAGGGCG
ACGGCAATTGCTTTTGGCCGTCTTTGGCCAGGGCGCTGTGGGGTACAGAT
AAGTACTGGCGCCAGCTGAAGCTCGCAGTACTTGCGTGGAGTGCTGTAAA
CGTCGAGGCTCTGGTCGGGAAGGGAGGGGCCCTTTTTGAGAACGGTATCC
ACTACACAGAAGAGATTCATGGAAAGCATGTCTACCGCGGCCCCAATGGG
GAAATTGATCACACGCGTGATGACTACGCGTCTATGCTCCTGGAGACTAC
TGCGAAGTTTTCCGGAAACAAACAATGGGGTGGGAGTCTTGCCGGCGTTT
TGTTTGCTGAAAGAACTGGCCTAGTGTTGAAGCTGCCGCATCCTTTTGAC
ATGCGGGCAAGGATCAAGGCTGACGCGAGCGGTGCGGCGCCTACTGGAAC
GGCAAGCTATGGTGGTCGTAGCGACCAGTTCGGCGACAACCGATTATCGT
TGCTGAAAGTACCGACAGGAGACCGTAAGGAGATCCTGTTACGTGGAGTT
AGCGGTGAGCTAGACATTGTGGTGGAAGAGATAGCCATCACAATCGTGCG
CGGCACCAGCGCGGTGGTCGGAGACGAAAGCCTCTTTGACATTCCCGTCA
TAGAGGCTGATACAAATCTTGAGCCTTTGAATCACTTCGCGGCGATAGTG
TGCGCAGACTCGGACGTTCACGTCAGGCGTCCGTTCCCGATGAGCAAAGC
TGGGCCGCCGCTTCACACGAAGTTTATGTATGACCCGCAGGCGACCATGA
TCCTCACACCGGAGTTGCGGCAGACGTTTGTGGCGTTGTGGGTCGAGGGC
GACGGCAATTGCTTTTGGCCGTCTTTGGCCAGGGCGCTGTGGGGTACAGA
TAAGTACTGGCGCCAGCTGAAGCTCGCAGTACTTGCGTGGAGTGCTGTAA
ACGTCGAGGCTCTGGTCGGGAAGGGAGGGGCCCTTTTTGAGAACGGTATC
CACTACACAGAAGAGATTCATGGAAAGCATGTCTACCGCGGCCCCAATGG
GGAAATTGATCACACGCGTGATGACTACGCGTCTATGCTCCTGGAGACTA
CTGCGAAGTTTTCCGGAAACAAACAATGGGGTGGGAGTCTTGCCGGCGTT
TTGTTTGCTGAAAGAACTGGCCTAGTGTTGAAGCTGCCGCATCCTTTTGA
CATGCGGGCAAGGATCAAGGCTGACGCGAGCGGTGCGGCGCCTACTGGAA
CGGCAAGCTATGGTGGTCGTAGCGACCAGTTCGGCGACAACCGATTATCG
TTGCTGAAAGTACCGACAGGAGACCGTAAGGAGATCCTGTTACGTGGAGT
TAGCGGTGAGCTAGACATTGTGGTGGAAGAGATAGCCATCACAATCGTGC
GCGGCACCAGCGCGGTGGTCGGAGACGAAAGCCTCTTTGACATTCCCGTC
ATAGAGGCTGATACAAATCTTGAGCCTTTGAATCACTTCGCGGCGATAGT
GTGCGCAGACTCGGACGTTCACGTCAGGCGTCCGTTCCCGATGAGCAAAG
CTGGGCCGCCGCTTCACACGAAGTTT
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