mRNA_L-elsbetiae_contig1094.847.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1094.847.1
Unique NamemRNA_L-elsbetiae_contig1094.847.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1094.847.1 vs. uniprot
Match: A0A6H5JEJ0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEJ0_9PHAE)

HSP 1 Score: 241 bits (615), Expect = 8.450e-72
Identity = 117/131 (89.31%), Postives = 128/131 (97.71%), Query Frame = 2 
Query:  332 RLLYAAAFAATEEACSDAWSEIFRHVKGSDCEDYVTGYLLRNHKHWSRCFFPTTMTLNMTATQRVEGIFGVLKKGRRVNRRCSLVRVKEELERRIAGFSLASNLLSSKAPSLGRKHIDDNVLKTAEHVFRQ 724
            RLL+AAAFAATEEACSDAWSEIFRHVKGSDCE+YVTG+LLR+H+HWSRCFFPTTMTLNMTATQRVEG+F VLKKGR VNRRCSLVRVK ELE+RIAGF+LASNLLS+KAPSLGR+HIDD+VLKTAEHVFRQ
Sbjct:  253 RLLHAAAFAATEEACSDAWSEIFRHVKGSDCEEYVTGHLLRHHRHWSRCFFPTTMTLNMTATQRVEGMFSVLKKGRIVNRRCSLVRVKAELEKRIAGFTLASNLLSTKAPSLGRQHIDDHVLKTAEHVFRQ 383
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BLAST of mRNA_L-elsbetiae_contig1094.847.1 vs. uniprot
Match: A0A6H5JJS4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJS4_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 5.360e-42
Identity = 93/115 (80.87%), Postives = 101/115 (87.83%), Query Frame = 1 
Query:    1 KEQDKGDGDGVDAATTGLEEAAAKQLPVYEESVLASELDAKKKARRYYELKEASSEAQKRSDTDKENKQLLWFSLTAEEELKKGRVSAAKARQAYEKALRNRNRALRALHKATLR 345
            KEQD GD DGVD AT   EEAAAKQLPVYEESVLA+ELDAKKKA RY+ELKEA S+A++RSD +KENKQL+WF L AEEEL KGRVSAAKAR+AYEKALRNRNRALRAL K TLR
Sbjct:  435 KEQDNGDEDGVDEATKKQEEAAAKQLPVYEESVLAAELDAKKKATRYHELKEALSQARQRSDANKENKQLVWFCLAAEEELGKGRVSAAKARRAYEKALRNRNRALRALGKITLR 549
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BLAST of mRNA_L-elsbetiae_contig1094.847.1 vs. uniprot
Match: D7FLF6_ECTSI (Putative far-red impaired response protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLF6_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 2.060e-23
Identity = 56/136 (41.18%), Postives = 85/136 (62.50%), Query Frame = 2 
Query:  320 EHCTRLLYA---AAFAATEEACSDAWSEIFRHVKGSDCEDYVTGYLLRNHKHWSRCFFPTTMTLNMTATQRVEGIFGVLKKGRRVNRRCSLVRVKEELERRIAGFSLASNLLSSKAPSLGRKHIDDNVLKTAEHVF 718
            E C  LL     A+ A + EA    W+++   VKG+DCE+Y+  +L    KHW+RCF PT MTL+MT++QRVEG F VLKKGR + R  +  +V+ + E+      LAS + ++K  SLG+ +++++V K+ E V 
Sbjct:  191 EKCADLLRRWTRASLATSIEAFDGVWTDVEDLVKGTDCEEYILKFLYERRKHWARCFHPTVMTLDMTSSQRVEGTFSVLKKGRVLRRNSTFRQVRAKCEQIAGELRLASTMQATKQTSLGKGYVENDVKKSMEKVM 326
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BLAST of mRNA_L-elsbetiae_contig1094.847.1 vs. uniprot
Match: A0A6H5K454_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K454_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 7.290e-18
Identity = 48/128 (37.50%), Postives = 74/128 (57.81%), Query Frame = 2 
Query:  272 LDRRTRRRCATEIEHYEHCTRLLYAAAFAATEEACSDAWSEIFRHVKGSDCEDYVTGYLLRNHKHWSRCFFPTTMTLNMTATQRVEGIFGVLKKGRRVNRRCSLVRVKEELERRIAGFSLASNLLSSK 655
            + +  +R+C  E+  +    R   AA+FA + +A    W+ +   V+G+ CE+Y+ GYL    KHW+RC  PTTMTL MTA+QRVEG F V+K G  V +  +   V++ +E      +LAS +  S+
Sbjct:  961 ISKNLKRKCGGEV--FADVIRRYTAASFATSMKAFERIWNNLKEVVEGTPCEEYINGYLFDQRKHWARCCHPTTMTLGMTASQRVEGSFSVIKNGGAVRKNSTFGAVRKRVETVAEDLALASRMWVSR 1086
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1094.847.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JEJ0_9PHAE8.450e-7289.31SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JJS4_9PHAE5.360e-4280.87SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FLF6_ECTSI2.060e-2341.18Putative far-red impaired response protein n=1 Tax... [more]
A0A6H5K454_9PHAE7.290e-1837.50SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1094contigL-elsbetiae_contig1094:23121..24872 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons7
Model size728
Cds size588
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1094.847.1prot_L-elsbetiae_contig1094.847.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1094 23403..24872 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815311.4739513-UTR-L-elsbetiae_contig1094:23120..232041622815311.4739513-UTR-L-elsbetiae_contig1094:23120..23204Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1094 23121..23204 -
1691682831.0002973-UTR-L-elsbetiae_contig1094:23120..232041691682831.0002973-UTR-L-elsbetiae_contig1094:23120..23204Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1094 23121..23204 -
1622815311.5452635-UTR-L-elsbetiae_contig1094:23348..234021622815311.5452635-UTR-L-elsbetiae_contig1094:23348..23402Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1094 23349..23402 -
1691682831.0114205-UTR-L-elsbetiae_contig1094:23348..234021691682831.0114205-UTR-L-elsbetiae_contig1094:23348..23402Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1094 23349..23402 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815311.5629654-CDS-L-elsbetiae_contig1094:23402..235371622815311.5629654-CDS-L-elsbetiae_contig1094:23402..23537Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1094 23403..23537 -
1691682831.0209856-CDS-L-elsbetiae_contig1094:23402..235371691682831.0209856-CDS-L-elsbetiae_contig1094:23402..23537Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1094 23403..23537 -
1622815311.573265-CDS-L-elsbetiae_contig1094:23730..238131622815311.573265-CDS-L-elsbetiae_contig1094:23730..23813Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1094 23731..23813 -
1691682831.0308974-CDS-L-elsbetiae_contig1094:23730..238131691682831.0308974-CDS-L-elsbetiae_contig1094:23730..23813Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1094 23731..23813 -
1622815311.583547-CDS-L-elsbetiae_contig1094:23970..240071622815311.583547-CDS-L-elsbetiae_contig1094:23970..24007Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1094 23971..24007 -
1691682831.0414667-CDS-L-elsbetiae_contig1094:23970..240071691682831.0414667-CDS-L-elsbetiae_contig1094:23970..24007Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1094 23971..24007 -
1622815311.5965154-CDS-L-elsbetiae_contig1094:24217..243941622815311.5965154-CDS-L-elsbetiae_contig1094:24217..24394Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1094 24218..24394 -
1691682831.0534654-CDS-L-elsbetiae_contig1094:24217..243941691682831.0534654-CDS-L-elsbetiae_contig1094:24217..24394Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1094 24218..24394 -
1622815311.6064405-CDS-L-elsbetiae_contig1094:24542..246171622815311.6064405-CDS-L-elsbetiae_contig1094:24542..24617Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1094 24543..24617 -
1691682831.0650158-CDS-L-elsbetiae_contig1094:24542..246171691682831.0650158-CDS-L-elsbetiae_contig1094:24542..24617Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1094 24543..24617 -
1622815311.6159132-CDS-L-elsbetiae_contig1094:24791..248721622815311.6159132-CDS-L-elsbetiae_contig1094:24791..24872Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1094 24792..24872 -
1691682831.0764275-CDS-L-elsbetiae_contig1094:24791..248721691682831.0764275-CDS-L-elsbetiae_contig1094:24791..24872Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1094 24792..24872 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1094.847.1

>prot_L-elsbetiae_contig1094.847.1 ID=prot_L-elsbetiae_contig1094.847.1|Name=mRNA_L-elsbetiae_contig1094.847.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=196bp
KEQDKGDGDGVDAATTGLEEAAAKQLPVYEESVLASELDAKKKARRYYEL
KEASSEAQKRSDTDKENKQLLWFSLTAEEELKKGRVSAAKARQAYEKALR
NRNRALRALHKATLRRCVRCYRGGMLRRLVGDLSSRQGLRLRRLRHGVPV
AEPQALVALLLPDDDDAQHDSDTEGGGDLRCVEERTTCEPPLFSG*
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mRNA from alignment at L-elsbetiae_contig1094:23121..24872-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1094.847.1 ID=mRNA_L-elsbetiae_contig1094.847.1|Name=mRNA_L-elsbetiae_contig1094.847.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1752bp|location=Sequence derived from alignment at L-elsbetiae_contig1094:23121..24872- (Laminarionema elsbetiae ELsaHSoW15)
AAAGAACAGGACAAGGGTGACGGGGACGGAGTCGACGCGGCAACCACGGG
GCTGGAAGAGGCTGCGGCGAAGCAGCTACCGGTGAGTTCACGCGGCCCCA
ACAATGTAGCGGGTTGTGAGTATTGTTGGCGAAGGAGGTGTCGAGGACAA
CGTCACCATGTTGACCATGTGTGGGTGTTTTAGTGGAGTGTTTTGCTCGC
ATCTGACTTTCGGCCCTTGTTCAATGTCTGCCCCGAAAACGTGGGCGACT
CGCAGGTATACGAGGAGAGCGTCCTGGCTTCCGAGCTCGACGCGAAGAAG
AAAGCTAGAAGATACTACGAGCTAAAGGAGGTGAGTGCATGCTGGGATGC
AGTGACTGGTCTTGATTGTAGTGGTGTGGGGCTAATGTTTAACGAGGTAC
CGAGCAGGTGCTCAATACATTACAGTTCCCGCCGGCTAAACCATGCCCCC
TTGGCCTCCTTCTGTCTGCGGCGAATAGGCTTCGTCTGAGGCCCAAAAAA
GATCAGATACGGACAAGGAAAACAAGCAACTGCTCTGGTTTTCTCTGACG
GCCGAAGAAGAGCTGAAGAAGGGACGGGTTTCAGCAGCAAAGGCTCGACA
GGCGTACGAGAAGGCGTTGCGCAACAGAAATAGAGCACTACGAGCACTGC
ACAAGGTGAGAAAATGTTAGTCGGCAGGTACCGCAGACCTGAACATACAC
GGGAGACCTTCACCTGGTTTTAGGGGCGTAACTGTGATGTGCTTGTTGGA
CATGTGGGGAAGCGGGAAAAGGCAACTACTGAAAGCCTCGCCATACAGGC
CGGGGCCGGGCGTCGCAAACCCTGACTCCTGACTGCGTTTCCGCTTCTCG
TTTCCGCTTCTACAGGCTACTCTACGCCGCTGCGTTCGCTGCTACAGAGG
AGGTGAGTGCCCTTTGCGCTCGGCGGGGAACCGAGCACCAAAACGCGCGC
GTCGTACTCCGTACATACATGTGGACGTTCATAAGTTCAACTGTTTCGCT
CTAAACCCTTGGGTATATGCCTCTTAGACTTAACACGCTCTACCGGCCGT
ATTTCGCAGGCATGCTCAGACGCCTGGTCGGAGATCTTTCGTCACGTCAA
GGGCTCCGACTGCGAAGATTACGTCACGGGGTACCTGTTGCGGTGAGTGG
GGCTTTGTTTTGTCGGGGTTTGTAGGTGAGTCTGGTGTGGTGGCGACAGA
GCGTCCGTGGGAGTTGACGGTAGGCTCTCTTCGTTTTTCCCTTGTACATG
TTGCTCGTCTTGCTCGTGATTGTTTGTTGATGAAATAGAAGGCCTTACTG
CTGTGCGAACCATTGTGGAAACGTACCCATCCCAGGAACCACAAGCACTG
GTCGCGCTGCTTCTTCCCGACGACGATGACGCTCAACATGACAGCGACAC
AGAGGGTGGAGGGGATCTTCGGTGTGTTGAAGAAAGGACGACGTGTGAAC
CGCCGCTGTTCTCTGGTTAGGGTCAAAGAAGAGCTGGAGAGGCGGATCGC
AGGTTTTTCTTTGGCGTCGAATCTGTGAGTGTCTTGACCGCCATACTATT
TCGCTTTATTGCACCAATCATGCCATCGAGAGAAGCGTCTACTCTATGCC
TCCCTGAGCTCCCCCCTCCTCTTTCCAACGAACGTCGACCCTTTTGTTTC
TCCTCAATGACCAACCAGACTCAGCTCCAAGGCCCCCAGCCTTGGCAGGA
AGCACATCGACGACAACGTGCTCAAGACTGCGGAGCATGTCTTCAGACAA
CT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1094:23121..24872-

>mRNA_L-elsbetiae_contig1094.847.1 ID=mRNA_L-elsbetiae_contig1094.847.1|Name=mRNA_L-elsbetiae_contig1094.847.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1176bp|location=Sequence derived from alignment at L-elsbetiae_contig1094:23121..24872- (Laminarionema elsbetiae ELsaHSoW15)
AAAGAACAGGACAAGGGTGACGGGGACGGAGTCGACGCGGCAACCACGGG
GCTGGAAGAGGCTGCGGCGAAGCAGCTACCGAAAGAACAGGACAAGGGTG
ACGGGGACGGAGTCGACGCGGCAACCACGGGGCTGGAAGAGGCTGCGGCG
AAGCAGCTACCGGTATACGAGGAGAGCGTCCTGGCTTCCGAGCTCGACGC
GAAGAAGAAAGCTAGAAGATACTACGAGCTAAAGGAGGTATACGAGGAGA
GCGTCCTGGCTTCCGAGCTCGACGCGAAGAAGAAAGCTAGAAGATACTAC
GAGCTAAAGGAGGCTTCGTCTGAGGCCCAAAAAAGATCAGATACGGACAA
GGAAAACAAGCAACTGCTCTGGTTTTCTCTGACGGCCGAAGAAGAGCTGA
AGAAGGGACGGGTTTCAGCAGCAAAGGCTCGACAGGCGTACGAGAAGGCG
TTGCGCAACAGAAATAGAGCACTACGAGCACTGCACAAGGCTTCGTCTGA
GGCCCAAAAAAGATCAGATACGGACAAGGAAAACAAGCAACTGCTCTGGT
TTTCTCTGACGGCCGAAGAAGAGCTGAAGAAGGGACGGGTTTCAGCAGCA
AAGGCTCGACAGGCGTACGAGAAGGCGTTGCGCAACAGAAATAGAGCACT
ACGAGCACTGCACAAGGCTACTCTACGCCGCTGCGTTCGCTGCTACAGAG
GAGGCTACTCTACGCCGCTGCGTTCGCTGCTACAGAGGAGGCATGCTCAG
ACGCCTGGTCGGAGATCTTTCGTCACGTCAAGGGCTCCGACTGCGAAGAT
TACGTCACGGGGTACCTGTTGCGGCATGCTCAGACGCCTGGTCGGAGATC
TTTCGTCACGTCAAGGGCTCCGACTGCGAAGATTACGTCACGGGGTACCT
GTTGCGGAACCACAAGCACTGGTCGCGCTGCTTCTTCCCGACGACGATGA
CGCTCAACATGACAGCGACACAGAGGGTGGAGGGGATCTTCGGTGTGTTG
AAGAAAGGACGACGTGTGAACCGCCGCTGTTCTCTGGTTAGGAACCACAA
GCACTGGTCGCGCTGCTTCTTCCCGACGACGATGACGCTCAACATGACAG
CGACACAGAGGGTGGAGGGGATCTTCGGTGTGTTGAAGAAAGGACGACGT
GTGAACCGCCGCTGTTCTCTGGTTAG
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