mRNA_L-elsbetiae_contig10930.845.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10930.845.1
Unique NamemRNA_L-elsbetiae_contig10930.845.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10930.845.1 vs. uniprot
Match: A0A6H5KM66_9PHAE (RWD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KM66_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 2.460e-19
Identity = 42/44 (95.45%), Postives = 43/44 (97.73%), Query Frame = 1 
Query:    1 WLADNNVPSAVDGSMHGEMLRRMAEGDRDRRKVEEVKEAEAKVR 132
            WLADNNVPSAVDGSMHGEMLRRMAEGDRDRRKVE+VKEAEAK R
Sbjct:  116 WLADNNVPSAVDGSMHGEMLRRMAEGDRDRRKVEQVKEAEAKAR 159
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10930.845.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KM66_9PHAE2.460e-1995.45RWD domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10930contigL-elsbetiae_contig10930:244..3472 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.1
Seed ortholog evalue9e-15
Seed eggNOG ortholog2880.D7FTA4
Preferred nameRWDD4
KEGG koko:K20032
KEGG TC9.B.37.1,9.B.37.3
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0002181,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005844,GO:0006355,GO:0006357,GO:0006412,GO:0006518,GO:0006807,GO:0006950,GO:0006979,GO:0007154,GO:0007165,GO:0007568,GO:0007569,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009719,GO:0009725,GO:0009755,GO:0009889,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010469,GO:0010556,GO:0010646,GO:0010647,GO:0014070,GO:0019219,GO:0019222,GO:0019538,GO:0023051,GO:0023052,GO:0023056,GO:0030518,GO:0030521,GO:0030522,GO:0031323,GO:0031326,GO:0032101,GO:0032103,GO:0032104,GO:0032106,GO:0032107,GO:0032109,GO:0032502,GO:0032870,GO:0032991,GO:0033143,GO:0033145,GO:0033554,GO:0033574,GO:0033993,GO:0034599,GO:0034641,GO:0034645,GO:0042221,GO:0043043,GO:0043170,GO:0043401,GO:0043603,GO:0043604,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044464,GO:0048518,GO:0048522,GO:0048545,GO:0048583,GO:0048584,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051090,GO:0051091,GO:0051171,GO:0051252,GO:0051716,GO:0060255,GO:0060765,GO:0065007,GO:0065009,GO:0070887,GO:0071310,GO:0071383,GO:0071394,GO:0071396,GO:0071407,GO:0071495,GO:0071704,GO:0080090,GO:0080134,GO:0080135,GO:1901564,GO:1901566,GO:1901576,GO:1901654,GO:1901655,GO:1901700,GO:1901701,GO:1903506,GO:1903832,GO:1903833,GO:1990904,GO:2000112,GO:2000273,GO:2000823,GO:2000825,GO:2001141
EggNOG free text desc.positive regulation of androgen receptor activity
EggNOG OGsKOG4018@1,KOG4018@2759
EC2.3.1.225
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04131
Ec32 ortholog descriptionRWD domain
Ec32 orthologEc-13_003860.1
Exons2
Model size135
Cds size135
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815311.3318965-CDS-L-elsbetiae_contig10930:243..2811622815311.3318965-CDS-L-elsbetiae_contig10930:243..281Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10930 244..281 +
1691682830.912761-CDS-L-elsbetiae_contig10930:243..2811691682830.912761-CDS-L-elsbetiae_contig10930:243..281Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10930 244..281 +
1622815311.34278-CDS-L-elsbetiae_contig10930:3375..34721622815311.34278-CDS-L-elsbetiae_contig10930:3375..3472Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10930 3376..3472 +
1691682830.9320095-CDS-L-elsbetiae_contig10930:3375..34721691682830.9320095-CDS-L-elsbetiae_contig10930:3375..3472Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10930 3376..3472 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10930.845.1prot_L-elsbetiae_contig10930.845.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10930 244..3472 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10930.845.1

>prot_L-elsbetiae_contig10930.845.1 ID=prot_L-elsbetiae_contig10930.845.1|Name=mRNA_L-elsbetiae_contig10930.845.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=45bp
WLADNNVPSAVDGSMHGEMLRRMAEGDRDRRKVEEVKEAEAKVRA
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mRNA from alignment at L-elsbetiae_contig10930:244..3472+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10930.845.1 ID=mRNA_L-elsbetiae_contig10930.845.1|Name=mRNA_L-elsbetiae_contig10930.845.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3229bp|location=Sequence derived from alignment at L-elsbetiae_contig10930:244..3472+ (Laminarionema elsbetiae ELsaHSoW15)
TGGCTCGCCGACAACAACGTGCCGTCTGCGGTGGATGGGTGAGGTTTTGA
TCGGGGGCTTGGAAGCAAAACTAAGCCGCCGTGTACATATGTTTACGTTT
TGCGTTTTGCCGCTGCCGTTTCAGTAGCGATGTGTATGCATGCGTTCGTT
GGTTGCACCCGCGCCCGGTCGAATGATTGAGTGATAAGTACGTCGGTGAA
CCCTTTGGTGGGTGTGTAACATGCCTGCTCGCGATAAAAACATCCAAGGC
AGGCACCGCAGGAGGGGGTCCAACAATTCCCCCTCCTGTGTGACCCCGGT
TGGGTCGTCTAGCTATTGTCGTAGTGGAGGATGGGGGCCAGTGGGGCAGA
CGACAAGTATACAGATATGCCAATGATGGGCGGGAAAAAAAAAAATGTTG
CTGCTGCTTCTTTTGCCTTTCGGCACTCATCCAAGAAGAGCGAGCAAGTC
TCGTTGCAGACGATGTCCATATCGTCTCCTAAAAGTCGGAAAATGCGTAT
TGACTTGGATTTGTATGGATTAATTAAATTTGGCTCTATTCCCTGCCCCA
AGCCAAATACTTTAATTAATAATTACATAAACTTAAACACCCATATGTAT
AAAATACCCTGCCCCAAACCAAATAATTAATACTTCGTAATTAAATAAAA
TTAAACACCCCATATATATAATATATTATTAGAAGATTGTACATTGTACA
TACGACACCAACCTGTTTTGCAGGCTATTCCCTGCCCCAAACCATAATTA
ATGGTTAAATAAAATTAAACACACCATACGATATAATATATCTATTCTGT
TGTTCAAAATCGCACGCCTCGGAGTTATCGCACCGGGGTGTCCCCGTTGT
TGTTCACAATAATGAAGTTATTGTTCACAAGAATGAAGTTAGCATTGTTG
GCGGGTATGGGAAGCCTCGGCTTTCGATAGCTCTCTTTCTGTTTGTTTTT
TTTCGAGTCGTGGTATAGTCTACAGAAGTATCTGTTTATTTTATTTTATT
TTATTTTATTTTATTTTTTTGATCACGGGCCCTACAAAACTTCCACTCCT
CTATCTACTCTGAGGTATCGCGTTTCTCGTTCTGCAAACAGGATCCCCCA
TGTACAACCGATGCGATCGACGCTCCTCGACAGGTCACCTTTCCTCCGAG
TTTGCTTTCCTTCTCTTGGCTGAATTACAGGCAAACTACCGTAGGTGACA
CAAGATACCACACCCCCTGGACCGAATGTTAGAGCTCCATTACTCCGTAA
CGAAGACGGCGCAAGCACCAAACGACAGATTTTCGAACAGCCCTCGACTA
GACCTTTCCAACGCCACCCCTTCCGGCACTGGCACCCTCTTCGTTACGGA
GTAATGCAGCTCTGAAATTCGGTCCGGGGGGTGTGGTATCTTGTGTCACC
TACGGTATAATAGAACTGCAGCTTAGACGGGGACGCTAAGGTTCCATCCC
CTTATTTTTTATTTTTAACGAATTTGATAACGCCTTCGACAAATAACGCT
TTCCGCGAGAACGCTACATTTTTTATTTTATTTTTTCCGTGTGGTGGTAT
ATGTACATAAAGTAGTGCCTTCTGTTTTTTTAGTTGTAAAGAAGAACAAA
ACAAAATGTGAGATTCGGGGTATCTTCGAATCTGTGTTTTGTGGAAGGGG
ATTGGAAATTTCCTGAATTATATATGTACATAGAGTAGTGCCTTCTGTTT
TTTTTAGTTGTGAAGAAGAACAACACAAAATGTGAGATTCGGGGTATCTT
CGAATCTGTGTTTAGTGGAAGGGGATTGGAAATTTCCTGAATTATATATG
TACATCCAGTAGTGGTGCCCTCTGTTTTTTTGAGTTGCCAGCGAGACGCA
CGACTCCTTCGGGAGTCAGTTTGGTATCGCCTGGCGCGTACAATGCATCA
TACTCTTGTCTTGAAAGATAAGCAGATAATCAAAAATGGATCACAAATGG
AACCTAACCCACATTGAAGACGGGACTCCCGTGAGAATTTTCGGTATTCC
ATATAGACTAGTGACGTAATATTGGGCCGGCCGAGTAGAAAAACACCTAA
AATATTACTTCTAGAAGATTCAACATCTCCCCTGCAGTTCTCTGCCAGGT
CAAACAACATGTATTCCGGGGAGAAACCCTCCGTGATGCCGTGATATTGT
CAACAACTTCTATGTTTTACTTTTTCTTCAGCGGCGTCGAGACTGTGCCC
CCTTAAGTGTTTTGGTGACCACGGGCCGGGCCCCCATGGATGTAGAGGAC
TAATGTGAGAAACAACAACAACAACACACGGCACTGTCGGCGGGACTGTC
AACAATAACGTGAGAGAAACCACAACAGCAGCACACGGCACTGTCAGCGG
GACTGTCAACAGCAACAATTTCTGGACTATTTAGAGAGCTAATGAGAGAA
ACAACAGCAGCACACGGTACTGTCAGCGGGGCTGTCAACAACAACAATTT
CTGGACTATTTAGAGAGCTAATGACAGAAACAACAACAACAACAACAACA
ACAACAACAACAACAACGTATACACGGGACTGTCAGCGGGACTGTCAACA
ACAATAATTTCTGGACTATTTAGAGAGCTAATGAGAGAAGCAACAACAAC
AACAACAATATACCCACGGGACTGTCAGCGCGAATGCTAACAACAACACA
CACACGGGCATTGAAGACAACACCACGGGGAGATGTGTGATCTAATGGTT
GTTGTTTTTGGTGTTGTTGCCTTTACATGAAAGACCGTTCCGATCCCTCT
ATCCGGTACATCTCCACGAGTCTGTACCGATCCAACACTGACAGTCTCGC
GGTCGATTCGGTTCCCGTGGTCACAGGATAGCTTACATAGTAATATACCC
TAAAAAGGGGATACTGAAAAAGAAGAAAATAGTGCTGCCACCCTAGAATG
CACCCGCATGCCCTGGCTGCATACACATGGGACTGTCAGCGGGACTTGTC
AACAACAAAAACATACACACGTGCGTTGAATTGCATTTGTGTAGTTCGAT
GCACGGGGAGATGAGAAACAACAACATATACACGGGACTGTGAGCAACAT
ACACACGGGACTGTCAGCGGGACTGTCAACAACAACAACAACAACATACC
CACGTGCGTTAAATTGCAACTCTGCTGTGTAGGTCGATGCACGGGGAGAT
GCTCCGCAGGATGGCGGAGGGCGACAGGGACCGGCGAAAAGTGGAAGAGG
TTAAGGAGGCCGAGGCAAAGGTGCGGGCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10930:244..3472+

>mRNA_L-elsbetiae_contig10930.845.1 ID=mRNA_L-elsbetiae_contig10930.845.1|Name=mRNA_L-elsbetiae_contig10930.845.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=270bp|location=Sequence derived from alignment at L-elsbetiae_contig10930:244..3472+ (Laminarionema elsbetiae ELsaHSoW15)
TGGCTCGCCGACAACAACGTGCCGTCTGCGGTGGATGGTGGCTCGCCGAC
AACAACGTGCCGTCTGCGGTGGATGGGTCGATGCACGGGGAGATGCTCCG
CAGGATGGCGGAGGGCGACAGGGACCGGCGAAAAGTGGAAGAGGTTAAGG
AGGCCGAGGCAAAGGTGCGGGCAGTCGATGCACGGGGAGATGCTCCGCAG
GATGGCGGAGGGCGACAGGGACCGGCGAAAAGTGGAAGAGGTTAAGGAGG
CCGAGGCAAAGGTGCGGGCA
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