mRNA_L-elsbetiae_contig10927.840.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig10927.840.1 vs. uniprot
Match: D7FI10_ECTSI (DNA polymerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI10_ECTSI) HSP 1 Score: 130 bits (328), Expect = 1.330e-33 Identity = 71/89 (79.78%), Postives = 75/89 (84.27%), Query Frame = 1 Query: 1 LLDFNSLYPSLIQEYNLCFTTMNWAACDMSSVAQGG----------GAPAGPKLPALPADGMEIGVLPKVIRTLVERRSVVKKMLKKEK 237 LLDFNSLYPSLIQEYNLCFTTMNWAACDMS+ AQGG A AGPKLP LPA+GM+IGVLP+VIRTLVERRSVVKKMLKKEK Sbjct: 977 LLDFNSLYPSLIQEYNLCFTTMNWAACDMSTPAQGGEDDMDEDDGAAASAGPKLPDLPAEGMDIGVLPRVIRTLVERRSVVKKMLKKEK 1065
BLAST of mRNA_L-elsbetiae_contig10927.840.1 vs. uniprot
Match: B8LEG9_THAPS (DNA polymerase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LEG9_THAPS) HSP 1 Score: 97.4 bits (241), Expect = 7.480e-22 Identity = 50/79 (63.29%), Postives = 61/79 (77.22%), Query Frame = 1 Query: 1 LLDFNSLYPSLIQEYNLCFTTMNWAACDMSSVAQGGGAPAGPKLPALPADGMEIGVLPKVIRTLVERRSVVKKMLKKEK 237 LLDFNSLYPSLIQEYNLCFTTM W+ + + +GG P G +LP LP +G++ GVLP+VI+TLV+RR VKK LK EK Sbjct: 520 LLDFNSLYPSLIQEYNLCFTTMEWSKSNAPANVEGGEVPQGDQLPPLPDEGLKRGVLPRVIKTLVDRRRNVKKFLKTEK 598
BLAST of mRNA_L-elsbetiae_contig10927.840.1 vs. uniprot
Match: Q9SPV2_SKECO (DNA polymerase alpha (Fragment) n=2 Tax=Skeletonema costatum TaxID=2843 RepID=Q9SPV2_SKECO) HSP 1 Score: 88.6 bits (218), Expect = 3.490e-21 Identity = 47/78 (60.26%), Postives = 58/78 (74.36%), Query Frame = 1 Query: 4 LDFNSLYPSLIQEYNLCFTTMNWAACDMSSVAQGGGAPAGPKLPALPADGMEIGVLPKVIRTLVERRSVVKKMLKKEK 237 +DFN LYPSLIQEYNLCFTTM+W M VA+G AP LP LP + ++ GVLP+VI+TLV+RR VKK++K EK Sbjct: 2 MDFNWLYPSLIQEYNLCFTTMDWTKSVMPQVAEGA-APQADLLPPLPDESLDRGVLPRVIKTLVDRRRAVKKLVKTEK 78
BLAST of mRNA_L-elsbetiae_contig10927.840.1 vs. uniprot
Match: A0A7S2L169_9STRA (DNA polymerase n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2L169_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 2.790e-19 Identity = 48/79 (60.76%), Postives = 62/79 (78.48%), Query Frame = 1 Query: 1 LLDFNSLYPSLIQEYNLCFTTMNWAACDMSSVAQGGGAPAGPKLPALPADGMEIGVLPKVIRTLVERRSVVKKMLKKEK 237 LLDFNSLYPSLIQEYNLCFTTM+W+ + A+G AP G +LP LP + ++ GVLP+VI+TLV+RR VK+++K EK Sbjct: 933 LLDFNSLYPSLIQEYNLCFTTMDWSKSVTPNNAEGV-APQGDQLPPLPDESLDRGVLPRVIKTLVDRRRAVKRLVKTEK 1010
BLAST of mRNA_L-elsbetiae_contig10927.840.1 vs. uniprot
Match: K0T5T4_THAOC (DNA polymerase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T5T4_THAOC) HSP 1 Score: 84.3 bits (207), Expect = 2.960e-17 Identity = 48/79 (60.76%), Postives = 59/79 (74.68%), Query Frame = 1 Query: 1 LLDFNSLYPSLIQEYNLCFTTMNWAACDMSSVAQGGGAPAGPKLPALPADGMEIGVLPKVIRTLVERRSVVKKMLKKEK 237 LLDFNSLYPSLIQEYNLCFTTM+WA +A GA +LP+LP + ++ GVLP+VI++LVERR VKK +K EK Sbjct: 387 LLDFNSLYPSLIQEYNLCFTTMDWAKD--KDIADEAGAQEN-QLPSLPDESLDRGVLPRVIKSLVERRRNVKKFMKSEK 462
BLAST of mRNA_L-elsbetiae_contig10927.840.1 vs. uniprot
Match: A0A4D9CVK1_9STRA (DNA polymerase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CVK1_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 4.080e-17 Identity = 49/99 (49.49%), Postives = 60/99 (60.61%), Query Frame = 1 Query: 1 LLDFNSLYPSLIQEYNLCFTTMNWAACDMSSVAQGG---------------------GAPAGPKLPALPADGMEIGVLPKVIRTLVERRSVVKKMLKKE 234 LLDFNSLYPS+IQEYNLCFTT+NW+A S GG A G +LP LP ++ G+LP+VI+TLV+RRS VKK+LK E Sbjct: 966 LLDFNSLYPSIIQEYNLCFTTINWSAFARPSSTAGGDPLAKTAGDEDDVGLGADEDEAAAGGAQLPPLPDTALDQGILPRVIKTLVDRRSSVKKLLKAE 1064
BLAST of mRNA_L-elsbetiae_contig10927.840.1 vs. uniprot
Match: A0A7S3QD78_9STRA (DNA polymerase n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QD78_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 1.420e-16 Identity = 50/94 (53.19%), Postives = 60/94 (63.83%), Query Frame = 1 Query: 1 LLDFNSLYPSLIQEYNLCFTTMNW------AACDMSSVAQGGGAPAGP---------KLPALPADGMEIGVLPKVIRTLVERRSVVKKMLKKEK 237 LLDFNSLYPS+IQEYN+CFTTMNW A D +S + G KLP +P + + GVLP+VI+TLVERR VKKMLK+EK Sbjct: 938 LLDFNSLYPSIIQEYNMCFTTMNWGDYVYKAGNDATSNSNGEDGDEDQVAEVVSMDDKLPPIPDESTKEGVLPRVIKTLVERRKAVKKMLKQEK 1031
BLAST of mRNA_L-elsbetiae_contig10927.840.1 vs. uniprot
Match: A0A7S2UH04_9STRA (DNA polymerase n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UH04_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 1.940e-16 Identity = 46/80 (57.50%), Postives = 61/80 (76.25%), Query Frame = 1 Query: 1 LLDFNSLYPSLIQEYNLCFTTMNWAACDMSSVAQGGGAPAGPK-LPALPADGMEIGVLPKVIRTLVERRSVVKKMLKKEK 237 LLDFNSLYPS+IQEYNLCFTT+NW++ ++ V P+G + LP + ++ GVLP+VI+TLVERR VKK+LK+EK Sbjct: 954 LLDFNSLYPSIIQEYNLCFTTLNWSSGGVAEVKSE--TPSGEDYMVPLPDESVKQGVLPRVIKTLVERRRNVKKLLKQEK 1031
BLAST of mRNA_L-elsbetiae_contig10927.840.1 vs. uniprot
Match: A0A7S4EF44_9STRA (DNA polymerase n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EF44_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 1.940e-16 Identity = 52/89 (58.43%), Postives = 60/89 (67.42%), Query Frame = 1 Query: 1 LLDFNSLYPSLIQEYNLCFTTMN-WAACDMSSVA-------QGGGAPA---GPKLPALPADGMEIGVLPKVIRTLVERRSVVKKMLKKE 234 LLDFNSLYPSLIQEYNLCFTT+N WA+ +A +G G + G LPALP D E GVL KVIR+LV+RR VK M+KKE Sbjct: 1007 LLDFNSLYPSLIQEYNLCFTTVNGWASFHQQQIAALKEESARGCGPNSNTTGAALPALPDDSQETGVLAKVIRSLVQRRRQVKGMMKKE 1095
BLAST of mRNA_L-elsbetiae_contig10927.840.1 vs. uniprot
Match: A0A7S1BTL0_9STRA (DNA polymerase (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BTL0_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 6.700e-16 Identity = 45/79 (56.96%), Postives = 56/79 (70.89%), Query Frame = 1 Query: 1 LLDFNSLYPSLIQEYNLCFTTMNWAACD--MSSVAQGGGAPAGPKLPALPADGMEIGVLPKVIRTLVERRSVVKKMLKK 231 LLDFNSLYPS+IQEYN CFTT+ W+A +++ A AP+G L LP +GVLP+VI+TLVERR VK M+KK Sbjct: 539 LLDFNSLYPSIIQEYNFCFTTVEWSAHQEKVAAEASENDAPSGDILAPLPDGDAGVGVLPRVIKTLVERRRNVKNMMKK 617 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10927.840.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig10927.840.1 >prot_L-elsbetiae_contig10927.840.1 ID=prot_L-elsbetiae_contig10927.840.1|Name=mRNA_L-elsbetiae_contig10927.840.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=79bp LLDFNSLYPSLIQEYNLCFTTMNWAACDMSSVAQGGGAPAGPKLPALPADback to top mRNA from alignment at L-elsbetiae_contig10927:672..1577- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig10927.840.1 ID=mRNA_L-elsbetiae_contig10927.840.1|Name=mRNA_L-elsbetiae_contig10927.840.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=906bp|location=Sequence derived from alignment at L-elsbetiae_contig10927:672..1577- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig10927:672..1577- >mRNA_L-elsbetiae_contig10927.840.1 ID=mRNA_L-elsbetiae_contig10927.840.1|Name=mRNA_L-elsbetiae_contig10927.840.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=474bp|location=Sequence derived from alignment at L-elsbetiae_contig10927:672..1577- (Laminarionema elsbetiae ELsaHSoW15)back to top |