mRNA_L-elsbetiae_contig10927.840.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10927.840.1
Unique NamemRNA_L-elsbetiae_contig10927.840.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig10927.840.1 vs. uniprot
Match: D7FI10_ECTSI (DNA polymerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FI10_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 1.330e-33
Identity = 71/89 (79.78%), Postives = 75/89 (84.27%), Query Frame = 1
Query:    1 LLDFNSLYPSLIQEYNLCFTTMNWAACDMSSVAQGG----------GAPAGPKLPALPADGMEIGVLPKVIRTLVERRSVVKKMLKKEK 237
            LLDFNSLYPSLIQEYNLCFTTMNWAACDMS+ AQGG           A AGPKLP LPA+GM+IGVLP+VIRTLVERRSVVKKMLKKEK
Sbjct:  977 LLDFNSLYPSLIQEYNLCFTTMNWAACDMSTPAQGGEDDMDEDDGAAASAGPKLPDLPAEGMDIGVLPRVIRTLVERRSVVKKMLKKEK 1065          
BLAST of mRNA_L-elsbetiae_contig10927.840.1 vs. uniprot
Match: B8LEG9_THAPS (DNA polymerase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LEG9_THAPS)

HSP 1 Score: 97.4 bits (241), Expect = 7.480e-22
Identity = 50/79 (63.29%), Postives = 61/79 (77.22%), Query Frame = 1
Query:    1 LLDFNSLYPSLIQEYNLCFTTMNWAACDMSSVAQGGGAPAGPKLPALPADGMEIGVLPKVIRTLVERRSVVKKMLKKEK 237
            LLDFNSLYPSLIQEYNLCFTTM W+  +  +  +GG  P G +LP LP +G++ GVLP+VI+TLV+RR  VKK LK EK
Sbjct:  520 LLDFNSLYPSLIQEYNLCFTTMEWSKSNAPANVEGGEVPQGDQLPPLPDEGLKRGVLPRVIKTLVDRRRNVKKFLKTEK 598          
BLAST of mRNA_L-elsbetiae_contig10927.840.1 vs. uniprot
Match: Q9SPV2_SKECO (DNA polymerase alpha (Fragment) n=2 Tax=Skeletonema costatum TaxID=2843 RepID=Q9SPV2_SKECO)

HSP 1 Score: 88.6 bits (218), Expect = 3.490e-21
Identity = 47/78 (60.26%), Postives = 58/78 (74.36%), Query Frame = 1
Query:    4 LDFNSLYPSLIQEYNLCFTTMNWAACDMSSVAQGGGAPAGPKLPALPADGMEIGVLPKVIRTLVERRSVVKKMLKKEK 237
            +DFN LYPSLIQEYNLCFTTM+W    M  VA+G  AP    LP LP + ++ GVLP+VI+TLV+RR  VKK++K EK
Sbjct:    2 MDFNWLYPSLIQEYNLCFTTMDWTKSVMPQVAEGA-APQADLLPPLPDESLDRGVLPRVIKTLVDRRRAVKKLVKTEK 78          
BLAST of mRNA_L-elsbetiae_contig10927.840.1 vs. uniprot
Match: A0A7S2L169_9STRA (DNA polymerase n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2L169_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 2.790e-19
Identity = 48/79 (60.76%), Postives = 62/79 (78.48%), Query Frame = 1
Query:    1 LLDFNSLYPSLIQEYNLCFTTMNWAACDMSSVAQGGGAPAGPKLPALPADGMEIGVLPKVIRTLVERRSVVKKMLKKEK 237
            LLDFNSLYPSLIQEYNLCFTTM+W+     + A+G  AP G +LP LP + ++ GVLP+VI+TLV+RR  VK+++K EK
Sbjct:  933 LLDFNSLYPSLIQEYNLCFTTMDWSKSVTPNNAEGV-APQGDQLPPLPDESLDRGVLPRVIKTLVDRRRAVKRLVKTEK 1010          
BLAST of mRNA_L-elsbetiae_contig10927.840.1 vs. uniprot
Match: K0T5T4_THAOC (DNA polymerase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T5T4_THAOC)

HSP 1 Score: 84.3 bits (207), Expect = 2.960e-17
Identity = 48/79 (60.76%), Postives = 59/79 (74.68%), Query Frame = 1
Query:    1 LLDFNSLYPSLIQEYNLCFTTMNWAACDMSSVAQGGGAPAGPKLPALPADGMEIGVLPKVIRTLVERRSVVKKMLKKEK 237
            LLDFNSLYPSLIQEYNLCFTTM+WA      +A   GA    +LP+LP + ++ GVLP+VI++LVERR  VKK +K EK
Sbjct:  387 LLDFNSLYPSLIQEYNLCFTTMDWAKD--KDIADEAGAQEN-QLPSLPDESLDRGVLPRVIKSLVERRRNVKKFMKSEK 462          
BLAST of mRNA_L-elsbetiae_contig10927.840.1 vs. uniprot
Match: A0A4D9CVK1_9STRA (DNA polymerase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CVK1_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 4.080e-17
Identity = 49/99 (49.49%), Postives = 60/99 (60.61%), Query Frame = 1
Query:    1 LLDFNSLYPSLIQEYNLCFTTMNWAACDMSSVAQGG---------------------GAPAGPKLPALPADGMEIGVLPKVIRTLVERRSVVKKMLKKE 234
            LLDFNSLYPS+IQEYNLCFTT+NW+A    S   GG                      A  G +LP LP   ++ G+LP+VI+TLV+RRS VKK+LK E
Sbjct:  966 LLDFNSLYPSIIQEYNLCFTTINWSAFARPSSTAGGDPLAKTAGDEDDVGLGADEDEAAAGGAQLPPLPDTALDQGILPRVIKTLVDRRSSVKKLLKAE 1064          
BLAST of mRNA_L-elsbetiae_contig10927.840.1 vs. uniprot
Match: A0A7S3QD78_9STRA (DNA polymerase n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QD78_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.420e-16
Identity = 50/94 (53.19%), Postives = 60/94 (63.83%), Query Frame = 1
Query:    1 LLDFNSLYPSLIQEYNLCFTTMNW------AACDMSSVAQGGGAPAGP---------KLPALPADGMEIGVLPKVIRTLVERRSVVKKMLKKEK 237
            LLDFNSLYPS+IQEYN+CFTTMNW      A  D +S + G                KLP +P +  + GVLP+VI+TLVERR  VKKMLK+EK
Sbjct:  938 LLDFNSLYPSIIQEYNMCFTTMNWGDYVYKAGNDATSNSNGEDGDEDQVAEVVSMDDKLPPIPDESTKEGVLPRVIKTLVERRKAVKKMLKQEK 1031          
BLAST of mRNA_L-elsbetiae_contig10927.840.1 vs. uniprot
Match: A0A7S2UH04_9STRA (DNA polymerase n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UH04_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 1.940e-16
Identity = 46/80 (57.50%), Postives = 61/80 (76.25%), Query Frame = 1
Query:    1 LLDFNSLYPSLIQEYNLCFTTMNWAACDMSSVAQGGGAPAGPK-LPALPADGMEIGVLPKVIRTLVERRSVVKKMLKKEK 237
            LLDFNSLYPS+IQEYNLCFTT+NW++  ++ V      P+G   +  LP + ++ GVLP+VI+TLVERR  VKK+LK+EK
Sbjct:  954 LLDFNSLYPSIIQEYNLCFTTLNWSSGGVAEVKSE--TPSGEDYMVPLPDESVKQGVLPRVIKTLVERRRNVKKLLKQEK 1031          
BLAST of mRNA_L-elsbetiae_contig10927.840.1 vs. uniprot
Match: A0A7S4EF44_9STRA (DNA polymerase n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EF44_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 1.940e-16
Identity = 52/89 (58.43%), Postives = 60/89 (67.42%), Query Frame = 1
Query:    1 LLDFNSLYPSLIQEYNLCFTTMN-WAACDMSSVA-------QGGGAPA---GPKLPALPADGMEIGVLPKVIRTLVERRSVVKKMLKKE 234
            LLDFNSLYPSLIQEYNLCFTT+N WA+     +A       +G G  +   G  LPALP D  E GVL KVIR+LV+RR  VK M+KKE
Sbjct: 1007 LLDFNSLYPSLIQEYNLCFTTVNGWASFHQQQIAALKEESARGCGPNSNTTGAALPALPDDSQETGVLAKVIRSLVQRRRQVKGMMKKE 1095          
BLAST of mRNA_L-elsbetiae_contig10927.840.1 vs. uniprot
Match: A0A7S1BTL0_9STRA (DNA polymerase (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BTL0_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 6.700e-16
Identity = 45/79 (56.96%), Postives = 56/79 (70.89%), Query Frame = 1
Query:    1 LLDFNSLYPSLIQEYNLCFTTMNWAACD--MSSVAQGGGAPAGPKLPALPADGMEIGVLPKVIRTLVERRSVVKKMLKK 231
            LLDFNSLYPS+IQEYN CFTT+ W+A    +++ A    AP+G  L  LP     +GVLP+VI+TLVERR  VK M+KK
Sbjct:  539 LLDFNSLYPSIIQEYNFCFTTVEWSAHQEKVAAEASENDAPSGDILAPLPDGDAGVGVLPRVIKTLVERRRNVKNMMKK 617          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10927.840.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FI10_ECTSI1.330e-3379.78DNA polymerase n=2 Tax=Ectocarpus TaxID=2879 RepID... [more]
B8LEG9_THAPS7.480e-2263.29DNA polymerase (Fragment) n=1 Tax=Thalassiosira ps... [more]
Q9SPV2_SKECO3.490e-2160.26DNA polymerase alpha (Fragment) n=2 Tax=Skeletonem... [more]
A0A7S2L169_9STRA2.790e-1960.76DNA polymerase n=1 Tax=Skeletonema marinoi TaxID=2... [more]
K0T5T4_THAOC2.960e-1760.76DNA polymerase n=1 Tax=Thalassiosira oceanica TaxI... [more]
A0A4D9CVK1_9STRA4.080e-1749.49DNA polymerase n=1 Tax=Nannochloropsis salina CCMP... [more]
A0A7S3QD78_9STRA1.420e-1653.19DNA polymerase n=1 Tax=Chaetoceros debilis TaxID=1... [more]
A0A7S2UH04_9STRA1.940e-1657.50DNA polymerase n=1 Tax=Attheya septentrionalis Tax... [more]
A0A7S4EF44_9STRA1.940e-1658.43DNA polymerase n=1 Tax=Pseudo-nitzschia australis ... [more]
A0A7S1BTL0_9STRA6.700e-1656.96DNA polymerase (Fragment) n=1 Tax=Corethron hystri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10927contigL-elsbetiae_contig10927:672..1577 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.0
Seed ortholog evalue3e-29
Seed eggNOG ortholog2880.D7FI10
Preferred namePOLA1
KEGG rclassRC02795
KEGG koko:K02320
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,map00230,map00240,map01100,map03030
KEGG ModuleM00261
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000082,GO:0000083,GO:0000166,GO:0000228,GO:0000278,GO:0000428,GO:0000723,GO:0000726,GO:0000731,GO:0000734,GO:0000781,GO:0000784,GO:0000785,GO:0000790,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003688,GO:0003690,GO:0003697,GO:0003824,GO:0003887,GO:0003896,GO:0003899,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005657,GO:0005658,GO:0005694,GO:0005730,GO:0005737,GO:0005739,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006269,GO:0006270,GO:0006271,GO:0006272,GO:0006273,GO:0006278,GO:0006279,GO:0006281,GO:0006302,GO:0006303,GO:0006310,GO:0006312,GO:0006355,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007275,GO:0007530,GO:0007531,GO:0007533,GO:0007534,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009059,GO:0009653,GO:0009889,GO:0009965,GO:0009987,GO:0010016,GO:0010468,GO:0010556,GO:0012505,GO:0016043,GO:0016070,GO:0016363,GO:0016740,GO:0016772,GO:0016779,GO:0017076,GO:0018130,GO:0019103,GO:0019219,GO:0019222,GO:0019438,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0022402,GO:0022413,GO:0022414,GO:0022616,GO:0030154,GO:0030880,GO:0030894,GO:0031323,GO:0031326,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032200,GO:0032201,GO:0032501,GO:0032502,GO:0032505,GO:0032774,GO:0032991,GO:0032993,GO:0033260,GO:0033554,GO:0034061,GO:0034062,GO:0034399,GO:0034641,GO:0034645,GO:0034654,GO:0035822,GO:0035861,GO:0036094,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043596,GO:0043601,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044770,GO:0044772,GO:0044786,GO:0044843,GO:0045165,GO:0046483,GO:0046982,GO:0046983,GO:0048366,GO:0048367,GO:0048731,GO:0048827,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051276,GO:0051321,GO:0051716,GO:0055029,GO:0060249,GO:0060255,GO:0061695,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090734,GO:0097159,GO:0097747,GO:0098687,GO:0099402,GO:0140097,GO:0140098,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902292,GO:1902295,GO:1902315,GO:1902318,GO:1902494,GO:1902969,GO:1902975,GO:1902981,GO:1903046,GO:1903047,GO:1903506,GO:1905392,GO:1990234,GO:1990837,GO:2000112,GO:2001141
EggNOG free text desc.leading strand elongation
EggNOG OGsCOG0417@1,KOG0970@2759
EC2.7.7.7
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032
Exons2
Model size237
Cds size237
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815310.9426801-CDS-L-elsbetiae_contig10927:671..8061622815310.9426801-CDS-L-elsbetiae_contig10927:671..806Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10927 672..806 -
1691682830.6588879-CDS-L-elsbetiae_contig10927:671..8061691682830.6588879-CDS-L-elsbetiae_contig10927:671..806Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10927 672..806 -
1622815310.9572127-CDS-L-elsbetiae_contig10927:1475..15771622815310.9572127-CDS-L-elsbetiae_contig10927:1475..1577Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10927 1476..1577 -
1691682830.6769629-CDS-L-elsbetiae_contig10927:1475..15771691682830.6769629-CDS-L-elsbetiae_contig10927:1475..1577Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10927 1476..1577 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10927.840.1prot_L-elsbetiae_contig10927.840.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10927 672..1577 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10927.840.1

>prot_L-elsbetiae_contig10927.840.1 ID=prot_L-elsbetiae_contig10927.840.1|Name=mRNA_L-elsbetiae_contig10927.840.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=79bp
LLDFNSLYPSLIQEYNLCFTTMNWAACDMSSVAQGGGAPAGPKLPALPAD
GMEIGVLPKVIRTLVERRSVVKKMLKKEK
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mRNA from alignment at L-elsbetiae_contig10927:672..1577-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10927.840.1 ID=mRNA_L-elsbetiae_contig10927.840.1|Name=mRNA_L-elsbetiae_contig10927.840.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=906bp|location=Sequence derived from alignment at L-elsbetiae_contig10927:672..1577- (Laminarionema elsbetiae ELsaHSoW15)
CTGCTCGACTTCAACAGCCTCTACCCGTCGCTGATCCAGGAGTACAACCT CTGCTTCACCACCATGAACTGGGCGGCCTGCGACATGTCCAGCGTTGCTC AGGTAGGGTTTTGTTCGGCCGGGGGAGTGACGGGGTGGGGGGCGGTGGGG GGCCGGCGGGGCCGGGGCGGTGGTGTGGGCTCCTTGGTTGGAGGGGAGTT TTGCGGGTAGTGGCTGGTTGTCGGTGGTCTCTAGGCAGGCTTTCAGTCAG CAAAACATATGGGATAAAGTATGGAATCGGAGGAATGGGGGGGGGGGTCG TGGTTCGGGTTCGGGTTACGGAACCCCCTCACTCTATTTGACATCCGTAT GAACCTGAATTTGACGATTTTCTGCGCGTAGGTGCTCCCTGGTTGTTATC GTTGGGTATTAATTGGATGCTGGCTTTGGTGATGCAGGCTTTGGTCCGTT GCGTACGTACATATGAAGGTTGCTGGTGTCGGATGGTGTTGGTCCTTGTT GTCGTTGCGACTGCTAATTTTTATACCATACAATACGTCGTTGTGTTATT TTACATTACATGGCGTTCTTTTTCTTCTTGTAAATACCATACCATATGTA TTTAGCAAAAGCTACTTTTTCTGGGCATTTTCTTAACCTACAGCAGTACC GCCCGCCCCCCCCCCCCCCCCCCCCCCCCCCCTCGCGCGCCCGGCCTCCG TGCGTGCATTCCCCGCCACGCTACACAACGGACAGGGAGGGGAAGCAGAC GATGTGGACATGGATGGGGAGGGCGGCGGCGCCCCCGCCGGCCCCAAGCT CCCTGCCTTGCCTGCCGACGGCATGGAGATCGGCGTGCTGCCGAAGGTCA TCCGCACCCTCGTCGAGCGGCGCTCCGTGGTGAAGAAGATGCTCAAGAAG GAGAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10927:672..1577-

>mRNA_L-elsbetiae_contig10927.840.1 ID=mRNA_L-elsbetiae_contig10927.840.1|Name=mRNA_L-elsbetiae_contig10927.840.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=474bp|location=Sequence derived from alignment at L-elsbetiae_contig10927:672..1577- (Laminarionema elsbetiae ELsaHSoW15)
CTGCTCGACTTCAACAGCCTCTACCCGTCGCTGATCCAGGAGTACAACCT
CTGCTTCACCACCATGAACTGGGCGGCCTGCGACATGTCCAGCGTTGCTC
AGCTGCTCGACTTCAACAGCCTCTACCCGTCGCTGATCCAGGAGTACAAC
CTCTGCTTCACCACCATGAACTGGGCGGCCTGCGACATGTCCAGCGTTGC
TCAGGGCGGCGGCGCCCCCGCCGGCCCCAAGCTCCCTGCCTTGCCTGCCG
ACGGCATGGAGATCGGCGTGCTGCCGAAGGTCATCCGCACCCTCGTCGAG
CGGCGCTCCGTGGTGAAGAAGATGCTCAAGAAGGAGAAGGGCGGCGGCGC
CCCCGCCGGCCCCAAGCTCCCTGCCTTGCCTGCCGACGGCATGGAGATCG
GCGTGCTGCCGAAGGTCATCCGCACCCTCGTCGAGCGGCGCTCCGTGGTG
AAGAAGATGCTCAAGAAGGAGAAG
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