mRNA_L-elsbetiae_contig10922.838.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10922.838.1
Unique NamemRNA_L-elsbetiae_contig10922.838.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10922.838.1 vs. uniprot
Match: A0A6H5KLG8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLG8_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 8.320e-18
Identity = 47/85 (55.29%), Postives = 58/85 (68.24%), Query Frame = 3 
Query:    3 GVMNIVSVVTLLAQIATRSAGGVFPCGITSTASHFYVLLCVLPLVLRKSGDSAIWARTIFPSTSVQTLLGTGRPLLATPGSGYRH 257
            G MN+  VV   AQ+ATRSA   FPCGIT+T SH YVLLC LPL+LR+SGDSAI+A  + P++       T  PL+AT G  YR+
Sbjct:   48 GTMNVAWVVAAFAQMATRSAERAFPCGITATLSHLYVLLCTLPLMLRQSGDSAIFATRVSPTS-------TKSPLVATGGRRYRN 125
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10922.838.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KLG8_9PHAE8.320e-1855.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10922contigL-elsbetiae_contig10922:3445..4519 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size341
Cds size333
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10922.838.1prot_L-elsbetiae_contig10922.838.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10922 3453..4519 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815310.7250264-UTR-L-elsbetiae_contig10922:3444..34521622815310.7250264-UTR-L-elsbetiae_contig10922:3444..3452Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10922 3445..3452 +
1691682830.5266867-UTR-L-elsbetiae_contig10922:3444..34521691682830.5266867-UTR-L-elsbetiae_contig10922:3444..3452Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10922 3445..3452 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815310.7386801-CDS-L-elsbetiae_contig10922:3452..34881622815310.7386801-CDS-L-elsbetiae_contig10922:3452..3488Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10922 3453..3488 +
1691682830.5401602-CDS-L-elsbetiae_contig10922:3452..34881691682830.5401602-CDS-L-elsbetiae_contig10922:3452..3488Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10922 3453..3488 +
1622815310.7505188-CDS-L-elsbetiae_contig10922:3820..39591622815310.7505188-CDS-L-elsbetiae_contig10922:3820..3959Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10922 3821..3959 +
1691682830.5530229-CDS-L-elsbetiae_contig10922:3820..39591691682830.5530229-CDS-L-elsbetiae_contig10922:3820..3959Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10922 3821..3959 +
1622815310.7618146-CDS-L-elsbetiae_contig10922:4361..45191622815310.7618146-CDS-L-elsbetiae_contig10922:4361..4519Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10922 4362..4519 +
1691682830.5630069-CDS-L-elsbetiae_contig10922:4361..45191691682830.5630069-CDS-L-elsbetiae_contig10922:4361..4519Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10922 4362..4519 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10922.838.1

>prot_L-elsbetiae_contig10922.838.1 ID=prot_L-elsbetiae_contig10922.838.1|Name=mRNA_L-elsbetiae_contig10922.838.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=111bp
MNIVSVVTLLAQIATRSAGGVFPCGITSTASHFYVLLCVLPLVLRKSGDS
AIWARTIFPSTSVQTLLGTGRPLLATPGSGYRHNINFSFNRPSSLQRESS
ACEDQDKSASG
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mRNA from alignment at L-elsbetiae_contig10922:3445..4519+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10922.838.1 ID=mRNA_L-elsbetiae_contig10922.838.1|Name=mRNA_L-elsbetiae_contig10922.838.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1075bp|location=Sequence derived from alignment at L-elsbetiae_contig10922:3445..4519+ (Laminarionema elsbetiae ELsaHSoW15)
CTGGGGTCATGAACATCGTCTCGGTGGTCACACTCTTGGCACAGGTGATC
TACTGCTCCGTGTCGTTGCTGTTATAAAGTACGTAGGTATTTGTTCTTGA
TGGCAGCTACGTTTCTGGATTTGGGTCGACATCTCCAAGCTTTAGACGAA
AAGTGTCGCCATTGGCAGGCCTCACCGGCTTGCTTGGCGGAACGCTTGAT
CTACACTTGAGAAACGTGGCAGCCTGCGGGGCGGCATCTTGGGGCTTTTG
GACGCTCCTATTTATAAAACCTTTTGACACGTTGGCACTTGTGCTGGCTT
ACGGCATGGCTGTCATCGAGAATACTTCAAACACAGTTGCACACGTTTCT
ACACACGTTTCAATCGACCTTTTCAGATTGCGACGAGGAGTGCCGGTGGG
GTATTCCCGTGCGGCATAACCTCCACCGCTTCGCACTTCTATGTGCTGCT
CTGCGTGCTACCCTTGGTACTCCGCAAGAGTGGGGACTCCGCTATCTGGG
CCAGGACGATCTTCCGTGAGAGAAGCTGAAATCCGTGTCGGGTACAAGCA
TTTTGTCACGTCGGGTATTAGAGGGACTCTTCAGTTCAGTCGCCGGGTTT
TTGTATCTTGCTCTCAGGCATTTTTCTCCTGTGTTTGTAGTACCCCGACA
GAATTGGATAGAGCAGTCCACCGCTGCTGTGTGTACGGGTCCGGGTGTGT
ACGGGTCCGGGGTTTATCGGGTTAGAGCAGTCCACCGCTGTGTGTACGGG
TCCGGGGTTTATCGGGGAGTGTCGTCCCAATCCAGTTTCGTCCCGCCCTT
CTGTCGTTTGCACATGTGTTCATCACAGTAAGGTCCACCTATTATCATAA
CCCGGCGTCTAACCGATTCGACTCCCTGCCGCGCCCACCTCATTGCTTCG
CTTCCTACGTAACGCAGCTTCCACCAGCGTGCAAACCCTACTGGGCACCG
GGAGGCCACTGCTGGCAACCCCTGGATCGGGGTACCGGCACAACATCAAC
TTTTCTTTCAACCGTCCATCCTCGCTGCAGCGCGAAAGTAGTGCTTGTGA
GGACCAGGACAAGAGTGCTAGCGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10922:3445..4519+

>mRNA_L-elsbetiae_contig10922.838.1 ID=mRNA_L-elsbetiae_contig10922.838.1|Name=mRNA_L-elsbetiae_contig10922.838.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=666bp|location=Sequence derived from alignment at L-elsbetiae_contig10922:3445..4519+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAACATCGTCTCGGTGGTCACACTCTTGGCACAGATGAACATCGTCTC
GGTGGTCACACTCTTGGCACAGATTGCGACGAGGAGTGCCGGTGGGGTAT
TCCCGTGCGGCATAACCTCCACCGCTTCGCACTTCTATGTGCTGCTCTGC
GTGCTACCCTTGGTACTCCGCAAGAGTGGGGACTCCGCTATCTGGGCCAG
GACGATCTTCCATTGCGACGAGGAGTGCCGGTGGGGTATTCCCGTGCGGC
ATAACCTCCACCGCTTCGCACTTCTATGTGCTGCTCTGCGTGCTACCCTT
GGTACTCCGCAAGAGTGGGGACTCCGCTATCTGGGCCAGGACGATCTTCC
CTTCCACCAGCGTGCAAACCCTACTGGGCACCGGGAGGCCACTGCTGGCA
ACCCCTGGATCGGGGTACCGGCACAACATCAACTTTTCTTTCAACCGTCC
ATCCTCGCTGCAGCGCGAAAGTAGTGCTTGTGAGGACCAGGACAAGAGTG
CTAGCGGCCTTCCACCAGCGTGCAAACCCTACTGGGCACCGGGAGGCCAC
TGCTGGCAACCCCTGGATCGGGGTACCGGCACAACATCAACTTTTCTTTC
AACCGTCCATCCTCGCTGCAGCGCGAAAGTAGTGCTTGTGAGGACCAGGA
CAAGAGTGCTAGCGGC
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