prot_L-elsbetiae_contig10916.833.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig10916.833.1
Unique Nameprot_L-elsbetiae_contig10916.833.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length208
Homology
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BLAST of mRNA_L-elsbetiae_contig10916.833.1 vs. uniprot
Match: D8LRF9_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF9_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 8.720e-5
Identity = 54/154 (35.06%), Postives = 65/154 (42.21%), Query Frame = 0 
Query:   29 AMYSDSPTMAEEMFSRRLAGGXXXXXXXXXXXXXKGRQPSVAG-GPTALAGSAMMFSGIDEHGGEEREGDGGQQLRLSPSAPLTSDDAFPAPMTNSFPASTDTPQSDYPGGRXXXXXXXXXXXXXRGAKRAGSSGPLSPSPASSAALLGPSPAA 181
            A  +DS TMAE+MF+RRL GG              GR PS  G                             + LRLSP+ P+ +  AFPA       ASTDTP+S+ PG                   R  ++  LSPSPASS  L GPSPAA
Sbjct: 1789 ASMADSSTMAEDMFARRLGGGD-------------GRPPSGTGDAXXXXXXXXXXXXXXXXXXXXXXXXXXXRSLRLSPAEPMAN--AFPAXXXXXXXASTDTPESEPPG--------RGGDPGRESDHRTKAAVTLSPSPASSMHLRGPSPAA 1919
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10916.833.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LRF9_ECTSI8.720e-535.06Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10916contigL-elsbetiae_contig10916:923..1546 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10916.833.1mRNA_L-elsbetiae_contig10916.833.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig10916 759..1894 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig10916.833.1 ID=prot_L-elsbetiae_contig10916.833.1|Name=mRNA_L-elsbetiae_contig10916.833.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=208bp
MFSRRLGGEISGGGGGGGPPGNAGGGSAAMYSDSPTMAEEMFSRRLAGGS
GSGGNGSGSSGSKGRQPSVAGGPTALAGSAMMFSGIDEHGGEEREGDGGQ
QLRLSPSAPLTSDDAFPAPMTNSFPASTDTPQSDYPGGRGGAGGAGGGGG
IGRGAKRAGSSGPLSPSPASSAALLGPSPAASEIREDAAPGGASFGTPGT
GSKWGRG*
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