mRNA_L-elsbetiae_contig10911.827.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10911.827.1
Unique NamemRNA_L-elsbetiae_contig10911.827.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10911.827.1 vs. uniprot
Match: A0A6H5JQQ5_9PHAE (4Fe-4S ferredoxin-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQQ5_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 9.980e-16
Identity = 39/53 (73.58%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:    1 GLQVLLWVLSTRTGAFLLTGRATPFHAQSLAARHAVLKRWSTSRIGKFREAFQ 159
            GL+VL  +LSTR GAF+LTGRA PFH+QSLAARH VLKRWS SRI   R+AFQ
Sbjct:  238 GLRVLFRMLSTRLGAFILTGRAVPFHSQSLAARHGVLKRWSVSRIRPLRDAFQ 290
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BLAST of mRNA_L-elsbetiae_contig10911.827.1 vs. uniprot
Match: D7G5T1_ECTSI (Oxidoreductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5T1_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 6.500e-15
Identity = 39/53 (73.58%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:    1 GLQVLLWVLSTRTGAFLLTGRATPFHAQSLAARHAVLKRWSTSRIGKFREAFQ 159
            GL+VL  VLSTR GAF+LTGRA PF +QSLAARH VLKRWS SRI   R+AFQ
Sbjct:  146 GLRVLFRVLSTRLGAFVLTGRAVPFQSQSLAARHGVLKRWSVSRIRPLRDAFQ 198
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BLAST of mRNA_L-elsbetiae_contig10911.827.1 vs. uniprot
Match: A0A0H2TWN5_MAGP6 (Long chain fatty acid oxidase (Fragment) n=1 Tax=Magnaporthiopsis poae (strain ATCC 64411 / 73-15) TaxID=644358 RepID=A0A0H2TWN5_MAGP6)

HSP 1 Score: 52.4 bits (124), Expect = 2.280e-6
Identity = 26/46 (56.52%), Postives = 31/46 (67.39%), Query Frame = 1 
Query:   10 VLLWVLSTRTGAFLLTGRATPFHAQSLAARHAVLKRWSTSRIGKFR 147
            +LL VLSTR GAF+LTG  TP H Q L  R AVL+RW+ S +   R
Sbjct:  125 LLLTVLSTRVGAFVLTGNCTPVHLQPLHVREAVLRRWTVSYVPAMR 170
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BLAST of mRNA_L-elsbetiae_contig10911.827.1 vs. uniprot
Match: A0A218YUI3_9HELO (Long-chain-alcohol oxidase n=1 Tax=Marssonina coronariae TaxID=503106 RepID=A0A218YUI3_9HELO)

HSP 1 Score: 50.4 bits (119), Expect = 1.110e-5
Identity = 24/58 (41.38%), Postives = 35/58 (60.34%), Query Frame = 1 
Query:    1 GLQVLLWVLSTRTGAFLLTGRATPFHAQSLAARHAVLKRWSTSRIGKFREAFQVRAVM 174
            GL ++L  L+TR G+ LLTG  TPFHAQ +  R A+L+ W  S +    + F+   V+
Sbjct:  118 GLGIVLATLNTRVGSMLLTGYTTPFHAQPIVVREAILESWRLSYLPPLNKIFKQMTVI 175
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BLAST of mRNA_L-elsbetiae_contig10911.827.1 vs. uniprot
Match: A0A1B8GRY9_9PEZI (Long-chain-alcohol oxidase n=18 Tax=Pseudogymnoascus TaxID=78156 RepID=A0A1B8GRY9_9PEZI)

HSP 1 Score: 47.8 bits (112), Expect = 9.950e-5
Identity = 24/51 (47.06%), Postives = 32/51 (62.75%), Query Frame = 1 
Query:    4 LQVLLWVLSTRTGAFLLTGRATPFHAQSLAARHAVLKRWSTSRIGKFREAF 156
            L ++L VLSTR GA LLTG ATP     + +R A+L+ W TS +G  R  +
Sbjct:  110 LMIILSVLSTRPGALLLTGYATPLDQLDIKSRTAILQGWGTSYLGAMRTLY 160
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10911.827.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JQQ5_9PHAE9.980e-1673.584Fe-4S ferredoxin-type domain-containing protein n... [more]
D7G5T1_ECTSI6.500e-1573.58Oxidoreductase n=1 Tax=Ectocarpus siliculosus TaxI... [more]
A0A0H2TWN5_MAGP62.280e-656.52Long chain fatty acid oxidase (Fragment) n=1 Tax=M... [more]
A0A218YUI3_9HELO1.110e-541.38Long-chain-alcohol oxidase n=1 Tax=Marssonina coro... [more]
A0A1B8GRY9_9PEZI9.950e-547.06Long-chain-alcohol oxidase n=18 Tax=Pseudogymnoasc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10911contigL-elsbetiae_contig10911:6266..6442 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.4
Seed ortholog evalue2.5e-12
Seed eggNOG ortholog2880.D7G5T1
KEGG koko:K17756
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0008150,GO:0008152,GO:0016491,GO:0044464,GO:0055114
EggNOG free text desc.long-chain-alcohol oxidase activity
EggNOG OGs2QSD8@2759,COG2303@1
EC1.1.3.20
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons1
Model size177
Cds size177
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815309.8245158-CDS-L-elsbetiae_contig10911:6265..64421622815309.8245158-CDS-L-elsbetiae_contig10911:6265..6442Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10911 6266..6442 +
1691682830.072102-CDS-L-elsbetiae_contig10911:6265..64421691682830.072102-CDS-L-elsbetiae_contig10911:6265..6442Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10911 6266..6442 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10911.827.1prot_L-elsbetiae_contig10911.827.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10911 6266..6442 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10911.827.1

>prot_L-elsbetiae_contig10911.827.1 ID=prot_L-elsbetiae_contig10911.827.1|Name=mRNA_L-elsbetiae_contig10911.827.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=59bp
GLQVLLWVLSTRTGAFLLTGRATPFHAQSLAARHAVLKRWSTSRIGKFRE
AFQVRAVM*
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mRNA from alignment at L-elsbetiae_contig10911:6266..6442+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10911.827.1 ID=mRNA_L-elsbetiae_contig10911.827.1|Name=mRNA_L-elsbetiae_contig10911.827.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=177bp|location=Sequence derived from alignment at L-elsbetiae_contig10911:6266..6442+ (Laminarionema elsbetiae ELsaHSoW15)
GGCCTTCAGGTGCTGCTCTGGGTGCTGAGCACGCGGACGGGGGCCTTTCT
CCTGACTGGTAGGGCGACGCCCTTCCACGCCCAGAGTCTCGCCGCGCGGC
ACGCTGTGCTGAAACGGTGGTCCACCTCGAGAATAGGGAAGTTCAGGGAA
GCGTTCCAGGTGAGAGCGGTAATGTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10911:6266..6442+

>mRNA_L-elsbetiae_contig10911.827.1 ID=mRNA_L-elsbetiae_contig10911.827.1|Name=mRNA_L-elsbetiae_contig10911.827.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=354bp|location=Sequence derived from alignment at L-elsbetiae_contig10911:6266..6442+ (Laminarionema elsbetiae ELsaHSoW15)
GGCCTTCAGGTGCTGCTCTGGGTGCTGAGCACGCGGACGGGGGCCTTTCT
CCTGACTGGTAGGGCGACGCCCTTCCACGCCCAGAGTCTCGCCGCGCGGC
ACGCTGTGCTGAAACGGTGGTCCACCTCGAGAATAGGGAAGTTCAGGGAA
GCGTTCCAGGTGAGAGCGGTAATGTAAGGCCTTCAGGTGCTGCTCTGGGT
GCTGAGCACGCGGACGGGGGCCTTTCTCCTGACTGGTAGGGCGACGCCCT
TCCACGCCCAGAGTCTCGCCGCGCGGCACGCTGTGCTGAAACGGTGGTCC
ACCTCGAGAATAGGGAAGTTCAGGGAAGCGTTCCAGGTGAGAGCGGTAAT
GTAA
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