prot_L-elsbetiae_contig10036.82.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig10036.82.1
Unique Nameprot_L-elsbetiae_contig10036.82.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length355
Homology
BLAST of mRNA_L-elsbetiae_contig10036.82.1 vs. uniprot
Match: D8LLT1_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLT1_ECTSI)

HSP 1 Score: 248 bits (634), Expect = 8.070e-75
Identity = 184/349 (52.72%), Postives = 214/349 (61.32%), Query Frame = 0
Query:    4 LLDMSLDQISSRGSRVSKVESSGNSAWQGGSRGREGGGMRSEV-SRPQSSVVVSGGGTFRSAIAST--TRAPSSGSGPMRRQGVARVARETAAPYQRPTRGPESVYNRLGGRVQEEAPGTHVRVEGLNHDVMDDDIKELFAGVGELKDCGIEYDRTGRSNGRAMVVFKREEDAESAVSQFHKRTLDGSPMLVEIVEAPEPRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFQNGS-----------RAXXXXXYNGAGNGAHRARVPQSHITIPGPGPVVTRLNQRQAPVAAAIPNVRAGLFGTSLNDRGGXXXXXXXANDMDEE-----LDDYIVPAMDGYG 333
            LL+MSLDQI SRG         G   ++GG+R REGGGMRSEV SRPQS V         S++A     RA SSGSGPMRRQG++RVARETAAPYQRPTR  + V++RLG  V     GT V V GLN DVMD+DIKELFAGVG+L  C I++DRTGRSNG A+V+FKR EDAE+AVSQFHKRTLDG+PM+VEIVE     G              XXXXXX              +QNG              XXXXX          +R+PQS IT+   GPV +RL Q Q P  AAIPNVRAGLFGTSL+D  G         DMDE+     LDDY+ P M+G+G
Sbjct:    5 LLNMSLDQIGSRGG--------GGGGFRGGARVREGGGMRSEVVSRPQSQVSX-----XXSSVAGNFAARALSSGSGPMRRQGISRVARETAAPYQRPTRPADGVHSRLGDPV---VAGTRVHVGGLNFDVMDEDIKELFAGVGDLLHCKIDFDRTGRSNGNALVIFKRREDAENAVSQFHKRTLDGTPMIVEIVEG----GGATESARGGVRGRGXXXXXXAPTWREPPTSTGAGYQNGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXSRMPQSRITMT--GPVASRL-QYQQPPQAAIPNVRAGLFGTSLDDVDGHHA------DMDEDVPGRDLDDYVHPGMNGFG 324          
BLAST of mRNA_L-elsbetiae_contig10036.82.1 vs. uniprot
Match: A0A6H5KWS3_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWS3_9PHAE)

HSP 1 Score: 208 bits (529), Expect = 2.340e-62
Identity = 125/196 (63.78%), Postives = 143/196 (72.96%), Query Frame = 0
Query:    4 LLDMSLDQISSRGSRVSKVESSGNSAWQGGSRGREGGGMRSEV-SRPQSSVVVSGGGTFRSAIAST--TRAPSSGSGPMRRQGVARVARETAAPYQRPTRGPESVYNRLGGRVQEEAPGTHVRVEGLNHDVMDDDIKELFAGVGELKDCGIEYDRTGRSNGRAMVVFKREEDAESAVSQFHKRTLDGSPMLVEIVE 196
            LL+MSLDQI SRG         G   ++GG+R REGGGMRSEV SRPQS V         S++A     RA SSGSGPMRRQG++R ARETAAPYQRPTR  + V++RLG  V     GT V V GLN DVMD+DIKELFAGVG+L  C I+YDR GRSNG A+V+FKR EDAE+AVSQFHKRTLDG+PM VEIVE
Sbjct:    5 LLNMSLDQIGSRGG--------GGGGFRGGARVREGGGMRSEVVSRPQSQVSX-----XXSSVAGNFAARALSSGSGPMRRQGISRAARETAAPYQRPTRPSDGVHSRLGDPV---VAGTRVHVGGLNFDVMDEDIKELFAGVGDLLHCKIDYDRAGRSNGNAVVIFKRREDAENAVSQFHKRTLDGTPMHVEIVE 184          
BLAST of mRNA_L-elsbetiae_contig10036.82.1 vs. uniprot
Match: A0A7S2V561_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V561_9STRA)

HSP 1 Score: 103 bits (258), Expect = 1.420e-22
Identity = 77/197 (39.09%), Postives = 107/197 (54.31%), Query Frame = 0
Query:    1 MADLLDMSLDQISSRGSRVSKVESSGNSAWQGGSRGREGGGMRSEVSRPQSSVVVSGGGTFRSAIASTTRAPSSGSGPMRRQGVARVARETAAPYQRPTRGPESVYNRLGGRVQEEAPGTHVRVEGLNHDVMDDDIKELFAGVGELKDCGIEYDRTGRSNGRAMVVFKREEDAESAVSQFHKRTLDGSPMLVEIVEA 197
            MA+ LDM+LD + +   R SK   SG +A           G++   ++ +++    GG   R A A      +      RR  V  +AR TAA       G  S++ RLGG+    A GT V V  LN D+M +D+KELFA +GELK   +++DR+GRS G A VVF R  DA  A+ +FH RTLDG+PM V++  A
Sbjct:    1 MAEELDMALDDLIAE--RTSKKPQSGRAAS----------GIQQRRAQRRANATPYGGRPARRA-AMDMDVDADRPAVTRRPSV--LARNTAAA------GSGSIFTRLGGKATPSA-GTAVEVSNLNFDIMSEDVKELFATIGELKTAEVKFDRSGRSVGEADVVFARRSDALEAIKKFHMRTLDGTPMHVKLAGA 175          
BLAST of mRNA_L-elsbetiae_contig10036.82.1 vs. uniprot
Match: A0A5A7P803_STRAF (RNA-binding (RRM/RBD/RNP motifs) family protein n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7P803_STRAF)

HSP 1 Score: 100 bits (248), Expect = 5.160e-21
Identity = 46/94 (48.94%), Postives = 64/94 (68.09%), Query Frame = 0
Query:  102 PESVYNRLGGRVQEEAPGTHVRVEGLNHDVMDDDIKELFAGVGELKDCGIEYDRTGRSNGRAMVVFKREEDAESAVSQFHKRTLDGSPMLVEIV 195
            P +   R+G RV     GT + +  L+H V D+DI+ELF+G+GELK C I YDR+GRS G A+VVF R  DAE+A+ +++   LDG PM +E+V
Sbjct:   58 PTAFPARVGARVSSIETGTKLLISNLHHGVTDEDIEELFSGIGELKSCSIHYDRSGRSEGTAVVVFCRRRDAETAIKRYNNVQLDGMPMRIELV 151          
BLAST of mRNA_L-elsbetiae_contig10036.82.1 vs. uniprot
Match: A0A830CTK6_9LAMI (THO complex subunit 4a n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830CTK6_9LAMI)

HSP 1 Score: 98.6 bits (244), Expect = 1.900e-20
Identity = 60/131 (45.80%), Postives = 77/131 (58.78%), Query Frame = 0
Query:   74 SGSGPMRRQGVARVARETAAPYQRPT-RGPESVYNR--------LGGRVQEEAPGTHVRVEGLNHDVMDDDIKELFAGVGELKDCGIEYDRTGRSNGRAMVVFKREEDAESAVSQFHKRTLDGSPMLVEIV 195
            SG GP RR      +R  AAPY     RGPES ++            RV     GT + V  L+  V+D+DI+ELF+G+GELK C I YDR+GRS G A VVF R  DAE+A+ +++   LDG PM +EIV
Sbjct:   25 SGPGPTRRYPGRSASR--AAPYSSSAARGPESQWDHGMFAAGPAFPARVSSIETGTKLLVSNLHFGVIDEDIEELFSGMGELKSCSIHYDRSGRSEGTAEVVFCRHRDAENAIKRYNNVQLDGMPMRIEIV 153          
BLAST of mRNA_L-elsbetiae_contig10036.82.1 vs. uniprot
Match: A0A484NEN9_9ASTE (RRM domain-containing protein n=3 Tax=Cuscuta sect. Cleistogrammica TaxID=1824901 RepID=A0A484NEN9_9ASTE)

HSP 1 Score: 94.7 bits (234), Expect = 6.220e-19
Identity = 52/137 (37.96%), Postives = 75/137 (54.74%), Query Frame = 0
Query:   75 GSGPMRRQGVARVARETAAPYQRPTRGPESVYNR----------------LGGRVQEEAPGTHVRVEGLNHDVMDDDIKELFAGVGELKDCGIEYDRTGRSNGRAMVVFKREEDAESAVSQFHKRTLDGSPMLVEIV 195
            G+GP RR  +   +   +APY    + P S +N                  GGR      GT + +  L++ V ++DIKELFA +G++K  G+ YDR+GRS G A VVF R +DA +A+ ++H   LDG PM +EIV
Sbjct:   32 GAGPARR--IPSRSSNRSAPYAAAPKAPSSAWNHDMFSADQQMGFPVPSAAGGRASSIETGTKIFISNLDYGVSNEDIKELFADIGDMKHYGVHYDRSGRSKGTADVVFSRRQDALTAIKRYHNVQLDGQPMKIEIV 166          
BLAST of mRNA_L-elsbetiae_contig10036.82.1 vs. uniprot
Match: A0A022RS00_ERYGU (RRM domain-containing protein n=1 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022RS00_ERYGU)

HSP 1 Score: 93.6 bits (231), Expect = 1.310e-18
Identity = 57/135 (42.22%), Postives = 76/135 (56.30%), Query Frame = 0
Query:   74 SGSGPMRRQGVARVARETAAPYQRPT-RGPESVYNR-----------LGG-RVQEEAPGTHVRVEGLNHDVMDDDIKELFAGVGELKDCGIEYDRTGRSNGRAMVVFKREEDAESAVSQFHKRTLDGSPMLVEIV 195
            SG GP RR  +   +   A PY   T R P + +N            +GG RV     GT + V  L+  V D+DIKE+F+GVG+LK C + YDR GRS G A VVF R  DAE+A+ +++   LDG PM +EI+
Sbjct:   25 SGPGPTRR--LPNRSASAATPYSTTTSRAPVAQWNHDTFAAEPAFPVVGGARVSAIETGTKLLVSNLHFGVSDEDIKEIFSGVGDLKSCSVHYDRVGRSEGTAEVVFFRRRDAEAAIKRYNNVQLDGKPMRIEII 157          
BLAST of mRNA_L-elsbetiae_contig10036.82.1 vs. uniprot
Match: A0A0L9T6G9_PHAAN (RRM domain-containing protein n=3 Tax=Vigna TaxID=3913 RepID=A0A0L9T6G9_PHAAN)

HSP 1 Score: 92.0 bits (227), Expect = 5.060e-18
Identity = 59/143 (41.26%), Postives = 77/143 (53.85%), Query Frame = 0
Query:   56 SGGGTFRSAIASTTRAPSSGSGPMRR---QGVARVARETAAPYQRPTRGPESVYNRLGGRVQEEAPGTHVRVEGLNHDVMDDDIKELFAGVGELKDCGIEYDRTGRSNGRAMVVFKREEDAESAVSQFHKRTLDGSPMLVEIV 195
            SG G FR       R+  SG GP RR   +   R A    A   +P     + Y   GG       GT + +  L++ V +DDIKELF+ VG+LK  G+ YDR+GRS G A VVF R  DA +AV +++   LDG PM +EIV
Sbjct:   19 SGSGNFRG----QNRSSGSGHGPSRRFPNRSANRAAPYATAKVDQPVAA--AGYPSQGGSASSMETGTKLYISNLDYGVSNDDIKELFSEVGDLKRHGVHYDRSGRSEGTAEVVFSRRADAVAAVKRYNNVQLDGKPMKIEIV 155          
BLAST of mRNA_L-elsbetiae_contig10036.82.1 vs. uniprot
Match: A0A2G9H1S1_9LAMI (RRM motif-containing protein n=1 Tax=Handroanthus impetiginosus TaxID=429701 RepID=A0A2G9H1S1_9LAMI)

HSP 1 Score: 91.3 bits (225), Expect = 8.030e-18
Identity = 50/108 (46.30%), Postives = 67/108 (62.04%), Query Frame = 0
Query:   92 AAPYQRPTRGPESVYNRL----GGRVQEEAPGTHVRVEGLNHDVMDDDIKELFAGVGELKDCGIEYDRTGRSNGRAMVVFKREEDAESAVSQFHKRTLDGSPMLVEIV 195
            AAPY  P + PES +       GGR      GT + +  L++ V ++D+KELFA VG+LK   I YDR+GRS G A VVF R +DA +AV +++   LDG PM +EIV
Sbjct:   47 AAPYAAP-KAPESAWGHDMFSGGGRASSIETGTKLYISNLDYGVSNEDVKELFAEVGDLKRYAIHYDRSGRSKGTAEVVFSRRQDALAAVKKYNNVQLDGKPMKIEIV 153          
BLAST of mRNA_L-elsbetiae_contig10036.82.1 vs. uniprot
Match: A0A151TMF4_CAJCA (RNA and export factor-binding protein 2 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151TMF4_CAJCA)

HSP 1 Score: 91.7 bits (226), Expect = 9.150e-18
Identity = 63/155 (40.65%), Postives = 81/155 (52.26%), Query Frame = 0
Query:   56 SGGGTFRSAIASTTRAPSSGSGPMRRQGVARVARETAAPYQRPTRGPESV---------------YNRLGGRVQEEAPGTHVRVEGLNHDVMDDDIKELFAGVGELKDCGIEYDRTGRSNGRAMVVFKREEDAESAVSQFHKRTLDGSPMLVEIV 195
            SG G  R   A T+R   SG GP RR   +  A   AAPY    + PE+                Y   GGR      GT + +  L+  V +DDIKELF+ VG++K  G+ YDR+GRS G A VVF R  DA +AV +++   LDG PM +EIV
Sbjct:   19 SGSGNSRGRGARTSR---SGPGPSRR--FSNRAANRAAPYST-AKAPEATWQHDMYADQHVAVGGYPAQGGRAPSIETGTKLYISNLDFGVSNDDIKELFSEVGDMKRHGVHYDRSGRSKGTAEVVFSRRSDAVAAVKRYNNVQLDGKPMKIEIV 167          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10036.82.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLT1_ECTSI8.070e-7552.72RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KWS3_9PHAE2.340e-6263.78RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S2V561_9STRA1.420e-2239.09Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A5A7P803_STRAF5.160e-2148.94RNA-binding (RRM/RBD/RNP motifs) family protein n=... [more]
A0A830CTK6_9LAMI1.900e-2045.80THO complex subunit 4a n=1 Tax=Phtheirospermum jap... [more]
A0A484NEN9_9ASTE6.220e-1937.96RRM domain-containing protein n=3 Tax=Cuscuta sect... [more]
A0A022RS00_ERYGU1.310e-1842.22RRM domain-containing protein n=1 Tax=Erythranthe ... [more]
A0A0L9T6G9_PHAAN5.060e-1841.26RRM domain-containing protein n=3 Tax=Vigna TaxID=... [more]
A0A2G9H1S1_9LAMI8.030e-1846.30RRM motif-containing protein n=1 Tax=Handroanthus ... [more]
A0A151TMF4_CAJCA9.150e-1840.65RNA and export factor-binding protein 2 n=1 Tax=Ca... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 121..193
e-value: 3.8E-14
score: 63.0
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 122..189
e-value: 2.2E-14
score: 53.0
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 120..197
score: 14.453
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 111..222
e-value: 5.7E-21
score: 77.0
NoneNo IPR availablePANTHERPTHR19965:SF62coord: 1..329
NoneNo IPR availablePANTHERPTHR19965RNA AND EXPORT FACTOR BINDING PROTEINcoord: 1..329
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 116..219

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10036contigL-elsbetiae_contig10036:216..7104 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10036.82.1mRNA_L-elsbetiae_contig10036.82.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig10036 216..7104 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig10036.82.1 ID=prot_L-elsbetiae_contig10036.82.1|Name=mRNA_L-elsbetiae_contig10036.82.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=355bp
MADLLDMSLDQISSRGSRVSKVESSGNSAWQGGSRGREGGGMRSEVSRPQ
SSVVVSGGGTFRSAIASTTRAPSSGSGPMRRQGVARVARETAAPYQRPTR
GPESVYNRLGGRVQEEAPGTHVRVEGLNHDVMDDDIKELFAGVGELKDCG
IEYDRTGRSNGRAMVVFKREEDAESAVSQFHKRTLDGSPMLVEIVEAPEP
RGGGGGGGGGDGGAAAAVRGRGGSAWREPPATTGGGFQNGSRASGGGGYN
GAGNGAHRARVPQSHITIPGPGPVVTRLNQRQAPVAAAIPNVRAGLFGTS
LNDRGGGGGGGGGANDMDEELDDYIVPAMDGYGGGGGFGGGGRGRGGGGH
GGRGG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf