mRNA_L-elsbetiae_contig109.822.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig109.822.1
Unique NamemRNA_L-elsbetiae_contig109.822.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig109.822.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig109contigL-elsbetiae_contig109:45637..48193 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size308
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815306.735704-CDS-L-elsbetiae_contig109:45638..456741622815306.735704-CDS-L-elsbetiae_contig109:45638..45674Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig109 45639..45674 -
1691682829.1725695-CDS-L-elsbetiae_contig109:45638..456741691682829.1725695-CDS-L-elsbetiae_contig109:45638..45674Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig109 45639..45674 -
1622815306.7457466-CDS-L-elsbetiae_contig109:47923..481931622815306.7457466-CDS-L-elsbetiae_contig109:47923..48193Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig109 47924..48193 -
1691682829.1811037-CDS-L-elsbetiae_contig109:47923..481931691682829.1811037-CDS-L-elsbetiae_contig109:47923..48193Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig109 47924..48193 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig109.822.1prot_L-elsbetiae_contig109.822.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig109 45639..48193 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig109.822.1

>prot_L-elsbetiae_contig109.822.1 ID=prot_L-elsbetiae_contig109.822.1|Name=mRNA_L-elsbetiae_contig109.822.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=102bp
LQVRTREEKRGRAVAQREETQGNITVRQHAVHEQQLQRVKEEHVGERLRP
GAQPNSVLTTAPALRRDGLPPCRPSLQSEEAGRVDWAALQVSIPRLEVKG
PT
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mRNA from alignment at L-elsbetiae_contig109:45637..48193-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig109.822.1 ID=mRNA_L-elsbetiae_contig109.822.1|Name=mRNA_L-elsbetiae_contig109.822.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2557bp|location=Sequence derived from alignment at L-elsbetiae_contig109:45637..48193- (Laminarionema elsbetiae ELsaHSoW15)
CTGCAAGTTCGTACTCGCGAGGAGAAACGGGGGCGGGCAGTGGCGCAACG
TGAGGAAACGCAGGGGAATATCACTGTGCGGCAACATGCCGTCCACGAGC
AACAGCTACAGCGCGTGAAGGAGGAGCATGTTGGAGAACGGCTTCGACCC
GGCGCTCAGCCCAACAGTGTTTTGACAACGGCACCTGCTCTTCGACGTGA
TGGCCTTCCACCATGCCGCCCTTCCCTTCAAAGTGAAGAGGCCGGGCGGG
TCGACTGGGCTGCTTTACAGGTAGGTTTGTATTGTCAAGTACACACACAT
GGTCTTTTTTCACACACAGCCAGTTTTACAGGATGTATGTAAGCTGACGC
TTTGAGTGGCCGCACCGTACATACCTTGCCACGTACCTTGGCCGGTGACG
TGGGCATTACCCTCACGATAGCATCGCCGGAGAAAACTACGTGCGTACTT
ATTTTTCCCCGTAAATATATAGAAACACCAAAAAAATCCAGGAGAAACAA
CGTGCTTATTTTTTTTGTACGTTGAAAAAATGTGGCCCGAAAGAGTCCAA
ACAAACGTATTTATCTACATAAATATATAGTAGACAAGCTTCTATTCTCA
CCCACCCTTATACTACATAGATACTTCAGGAGTACTAAATACACATCGGA
GATTCCTGCTTTCTACCTAAAAAAATAAATTGTACGGCGTGTGATGCGGC
GGCGGCATGACGCTTATATTTCACCTTTTTGAATCCAGCTAGAGGACGTA
GTTACAGCAGAAGTGCGAGTTGGACCCACTTTCCTTTTAAAATGTTAAAT
TATCTCAGTAATTAGGTCGGGTGCAACATCACGGCTGCGTGTGCAAAACT
AGCTTCTTTTTTGCTGTCCATAAAAATCGACTAAAATAGGAGTACAAATG
GCTGGCGTGAGATCTGAGATCTCTGAGATCCCCTACATACCAGACCCACC
ATCGTGGGCGAATGCGCATCTCCGCATCATCTCGGCAGACACACAAAGTC
GGAGATATATATGCCACGCTGCCTACATATATGGCGCCTTCCGCGGTTGA
TCGACATGGTTTTTTTTTAATGGGGGTTACGAACGAACCATCCACGGCGA
AGCTCTGAAAAATTGCACACACTTTCGATAGGTCACGCAGGTTACGAAAT
ATATACTTTTTTTTTATTTGGCTAATCTAAGTGGTGAGTTATTCACGATC
AAACTCGGAAAATCGCCTCTGCGGGGCCCCCGCGAAAATTTTAACCATCT
CCGAATCGTATGAAAAAATCAGGGGTGATGGATATAGCATTGCTTTTAAC
ACGTTTCCGAAGTCAGAAATTAAAACCAATCATTTCTGTGCTTGTACGCC
CCTTACGTCTTTGCGAGAAAGTGGGGACAATTTGGGTTTACACTTGGAAT
TACTCTCCAATATCCCCTCCCCGGGCTTGCGTTCCACATGTTGATTTAAG
CTCTGCAGATCTCGTCAAAGGGTAATTTGGGTCGCCGGTCACGAATATAT
CATCAGAAAACCCTAGTTCGGCAATGCAACCGACTTATAGGTGTGCGAAT
GCTGGGCTTAAGTGAGACATTTATTTCCAGATTTCTGAGAATCTTGAAAT
CCTCCTGTCACAGCGAGTTTTTGTCGGACCTACTTTCTGAGTGTCTCTAA
CCACCAAGCGGAGTCGATTGGCGAGGAGACCCACAAAAAAAGAAGGTCGG
GAATGCAGCGAAAAAAAAGTTCGAGGCGAAGACGAACTTTTTTTTTTTGG
GTCTACTTTTTAGACATCGTTTTTGAGCGTTTTAGAGCGAACCACGAAGA
AGTCGTTTTTTCTTTTTTCATATTTTTTTTCCTCAGTGAGAAACAGCCCA
TGTCGATCAACCGCGGATGGCGCCTATACACTCTCTCGTCACTCGACAAC
AAGGCTCCGTGTGACGCCAGAAGGGGAAATGCCCTTGTTGTTGTGTGTTC
TCCTGATGCCACCGCTGTCACAGCAAAACGTCATCATACAACATTATCCA
CTCTTCGAAGCATATTGCGGGAGGTGGAGTGCCACTTTATAGCTTTATAG
TGGTTGCCGCAACAACTAACCTGCCTAAAGATGACACTTTCAACCCCTGC
CACGCTGTGATGTCAGGTTTATTCAATTTATATGGCGTTCTCGTTTCGTG
CTAGTTCCCTGTTGCAACGGCGCGTCTTTTACGTATGTTTCGCCTCCATT
GACCCCGGGGGTGATGAGTTATCGTCCCCGGAATCTTAAAGACGCTTGCG
TTCCTCTGCCAGATTCTTGCGGGTTGGCCACGTGTGGTAAATTCGGGCAG
TTTATTTATTTCTCTTGGTGTTCAAACTCGTTCCAAAAATTCCGATGTCG
GTCCTCTCAATAAATCACGTGTATCTATGTAATATATATGTTTTAGTACT
CCTACACGGTAAATACCTGCTTCTGTCTTATTCTCGACCTGAAGGGCCGC
CGATCGTGTTATGTTAACGTATTCTTGGCCTGCACCTAATTCCCTGGTTT
GTATGATGTGCGGTCATAGGTGAGCATTCCTAGACTGGAGGTGAAGGGAC
CGACAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig109:45637..48193-

>mRNA_L-elsbetiae_contig109.822.1 ID=mRNA_L-elsbetiae_contig109.822.1|Name=mRNA_L-elsbetiae_contig109.822.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=612bp|location=Sequence derived from alignment at L-elsbetiae_contig109:45637..48193- (Laminarionema elsbetiae ELsaHSoW15)
CTGCAAGTTCGTACTCGCGAGGAGAAACGGGGGCGGGCAGTGGCGCAACG
TGAGGAAACGCAGGGGAATATCACTGTGCGGCAACATGCCGTCCACGAGC
AACAGCTACAGCGCGTGAAGGAGGAGCATGTTGGAGAACGGCTTCGACCC
GGCGCTCAGCCCAACAGTGTTTTGACAACGGCACCTGCTCTTCGACGTGA
TGGCCTTCCACCATGCCGCCCTTCCCTTCAAAGTGAAGAGGCCGGGCGGG
TCGACTGGGCTGCTTTACAGCTGCAAGTTCGTACTCGCGAGGAGAAACGG
GGGCGGGCAGTGGCGCAACGTGAGGAAACGCAGGGGAATATCACTGTGCG
GCAACATGCCGTCCACGAGCAACAGCTACAGCGCGTGAAGGAGGAGCATG
TTGGAGAACGGCTTCGACCCGGCGCTCAGCCCAACAGTGTTTTGACAACG
GCACCTGCTCTTCGACGTGATGGCCTTCCACCATGCCGCCCTTCCCTTCA
AAGTGAAGAGGCCGGGCGGGTCGACTGGGCTGCTTTACAGGTGAGCATTC
CTAGACTGGAGGTGAAGGGACCGACAGTGAGCATTCCTAGACTGGAGGTG
AAGGGACCGACA
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