mRNA_L-elsbetiae_contig1088.805.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1088.805.1
Unique NamemRNA_L-elsbetiae_contig1088.805.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1088.805.1 vs. uniprot
Match: A0A6H5K5Q9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5Q9_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 2.390e-17
Identity = 54/130 (41.54%), Postives = 81/130 (62.31%), Query Frame = 2 
Query:  167 FRLPDAEIDAEESRVKTVQRQQWLRRKDAAMANFRRECEAEVARVRVAVEDHVRDMESMLDEELIQALDGSIAEKMENNHREKARARKIENLMSAFFCDPRVPKAQRVA*GA-SDTGAGKRPTEHPCFCR 553
            F+L DAE DAE ++ K  Q +  +R+K  A+A FRR+CEAEV R++  +E+HV  +E  L  E+  +LDG++  K+E+NHR+K+RARK   ++S+F   P V K +R      SDT +  R  +   F R
Sbjct:  420 FQLADAEEDAERNKAKMDQCEALVRQKQEALARFRRDCEAEVERIKAVMEEHVAQLELKLKGEIQVSLDGTVKAKIEHNHRDKSRARKAHQILSSFSAAPLVSKMRRFDWPIHSDTLSSSRCPQRHTFAR 549
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BLAST of mRNA_L-elsbetiae_contig1088.805.1 vs. uniprot
Match: D7FM03_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM03_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 3.630e-13
Identity = 39/83 (46.99%), Postives = 58/83 (69.88%), Query Frame = 2 
Query:  167 FRLPDAEIDAEESRVKTVQRQQWLRRKDAAMANFRRECEAEVARVRVAVEDHVRDMESMLDEELIQALDGSIAEKMENNHREK 415
            F+L DAE DAE ++ K  Q + W+R+K  A+A FRR+CEAEV R++  +E+HV  +E  L  E+  +LDG +  K+E+NHR+K
Sbjct:   35 FQLVDAEEDAERTKAKMDQCEAWVRQKQEALARFRRDCEAEVKRIKAVMEEHVGQLELKLKGEMQVSLDGFVEAKIEHNHRDK 117
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1088.805.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K5Q9_9PHAE2.390e-1741.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FM03_ECTSI3.630e-1346.99Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1088contigL-elsbetiae_contig1088:14812..19304 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-22_000380.1
Exons5
Model size1074
Cds size486
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815305.7975671-UTR-L-elsbetiae_contig1088:14811..148211622815305.7975671-UTR-L-elsbetiae_contig1088:14811..14821Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1088 14812..14821 +
1691682828.5844648-UTR-L-elsbetiae_contig1088:14811..148211691682828.5844648-UTR-L-elsbetiae_contig1088:14811..14821Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1088 14812..14821 +
1622815305.8637671-UTR-L-elsbetiae_contig1088:17845..178611622815305.8637671-UTR-L-elsbetiae_contig1088:17845..17861Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1088 17846..17861 +
1691682828.6352386-UTR-L-elsbetiae_contig1088:17845..178611691682828.6352386-UTR-L-elsbetiae_contig1088:17845..17861Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1088 17846..17861 +
1622815305.8729272-UTR-L-elsbetiae_contig1088:18742..193041622815305.8729272-UTR-L-elsbetiae_contig1088:18742..19304Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1088 18743..19304 +
1691682828.6445982-UTR-L-elsbetiae_contig1088:18742..193041691682828.6445982-UTR-L-elsbetiae_contig1088:18742..19304Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1088 18743..19304 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815305.8094428-CDS-L-elsbetiae_contig1088:14821..150281622815305.8094428-CDS-L-elsbetiae_contig1088:14821..15028Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1088 14822..15028 +
1691682828.5947495-CDS-L-elsbetiae_contig1088:14821..150281691682828.5947495-CDS-L-elsbetiae_contig1088:14821..15028Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1088 14822..15028 +
1622815305.8207805-CDS-L-elsbetiae_contig1088:15870..159561622815305.8207805-CDS-L-elsbetiae_contig1088:15870..15956Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1088 15871..15956 +
1691682828.6086423-CDS-L-elsbetiae_contig1088:15870..159561691682828.6086423-CDS-L-elsbetiae_contig1088:15870..15956Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1088 15871..15956 +
1622815305.8348947-CDS-L-elsbetiae_contig1088:17005..171221622815305.8348947-CDS-L-elsbetiae_contig1088:17005..17122Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1088 17006..17122 +
1691682828.6183364-CDS-L-elsbetiae_contig1088:17005..171221691682828.6183364-CDS-L-elsbetiae_contig1088:17005..17122Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1088 17006..17122 +
1622815305.8542151-CDS-L-elsbetiae_contig1088:17769..178451622815305.8542151-CDS-L-elsbetiae_contig1088:17769..17845Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1088 17770..17845 +
1691682828.6267004-CDS-L-elsbetiae_contig1088:17769..178451691682828.6267004-CDS-L-elsbetiae_contig1088:17769..17845Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1088 17770..17845 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1088.805.1prot_L-elsbetiae_contig1088.805.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1088 14822..17845 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1088.805.1

>prot_L-elsbetiae_contig1088.805.1 ID=prot_L-elsbetiae_contig1088.805.1|Name=mRNA_L-elsbetiae_contig1088.805.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=162bp
MFLDDGGGGGSGVDGDDCDDGTAGGEDEDEVEEVEDEIEEVEDEDDEDGG
FGFRLPDAEIDAEESRVKTVQRQQWLRRKDAAMANFRRECEAEVARVRVA
VEDHVRDMESMLDEELIQALDGSIAEKMENNHREKARARKIENLMSAFFC
DPRVPKAQRVA*
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mRNA from alignment at L-elsbetiae_contig1088:14812..19304+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1088.805.1 ID=mRNA_L-elsbetiae_contig1088.805.1|Name=mRNA_L-elsbetiae_contig1088.805.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4493bp|location=Sequence derived from alignment at L-elsbetiae_contig1088:14812..19304+ (Laminarionema elsbetiae ELsaHSoW15)
AGAACACCATATGTTTCTGGACGATGGTGGTGGCGGCGGATCGGGGGTCG
ACGGCGACGATTGCGACGACGGCACCGCCGGCGGCGAAGACGAAGACGAA
GTCGAAGAAGTCGAAGACGAAATCGAAGAAGTCGAAGACGAAGACGACGA
AGATGGCGGTTTCGGCTTCCGCCTGCCGGACGCGGAGATCGACGCCGAAG
AGTCTCGGGTGAAGACGGTGAGTCGATCAGCACGTACATGGGCCGTGGTG
GCGAGGCTGTCGGCGTAAGGGCGAGGTAGTTAATAGCAAGGCGAGGTTCT
ACCGTAGATCGATAGCCCCCCTCCATGGAGCCTTTTTGTGGCTCGCCGAA
AGCCCCGCTGTAACGGAATTGGGAGGTGCGGGAACATTTCACACCCAATT
ACTTGTGTGCATTATACACACGCGTTAGCGACTTTTTCTCACAAGAGTGA
GTTTTTTCTCTCGCTTTCGTTCCTGTCACTGGAAAGCGCGAGTTCGCGTG
GTTGACGCTTGATTAAGGTAACAAGAGACGGCTGAGAATCTCCTCGCGTT
GAAACTCGAACACAACCACCTCAGAATGGGGGACGGGGGGAGGGGTGGAA
TCTCGGAAGGAGGAACCCTTCTGTGCGACAATGGCTCAGAGCTCTGACAA
GATGTCCCCTCGTGGCAAGGAGCCCGTCGAGCGCCGGAAATAAACGCGAT
GAAAAATAAAAATAAAACGTTTGTGGACGAGAACGTCCCGTCACGTCACA
AACTTGTTGCTTGCTTTGGTCTGCCAGAGGCGCACGACGGCCTAACCAAC
CGTTCCTTGTCGTACCACCGCCTTCATTTCGTTTGCCGCCTGACAGCAAC
ACGGAGGGGTGGCCCCATACAGAGTAGAGCCGCCTCTGTTCAACACACGT
CGGCTTGATGTTATAAGCTTTTTTATGTACATAAACGGCAAATACCTACC
CCCGTGCATGCTTCACCGGCAGTAGATCTCAGAACCCCCATGCTGCACCG
GCGGGAAGTCTCGGAGTCCCTCGAAACGCTCACTGCCTCGTGCTGCGGTG
CGGTTACAGGTCCAGCGCCAGCAGTGGCTGCGGCGAAAGGACGCCGCCAT
GGCAAACTTCCGCAGAGAATGCGAGGCGGAGGTGGCGCGCGTCAGGTGAG
CGGGGGCAGAACCGCTCCTTCCTCGTTGGCGTCGTCAACCATGTCAAACG
AATTTACTTGTCGAGACCGGCCTCGATATGAGCGCGGACGGCAAGGCAGC
GACGCACAGTGCTTGTTTATCGATAACCACTTTTTTTTGCTTCTTCGTCC
ATCAGTGGCATATTTGTCGTCTGCCCCACTGGCCCCCTTCTTTCACTACG
ACTGGCTAGCTAGACGACCAACCGGGGTCACCTGGGAGGGGGGTGGATCC
CCTCCTGCGGTGCCTGCCTTAGACGTTTTGGCCGCGAGCAGGGTTCAGTA
CTCCCCAACAATAAAGTCGAAGTCATATTTACTAACGAAATCTACTAATC
TACTAAGTTTGCTGCGATTTTTGCCCTTTTTTTTCAAGACACTATGCATT
CTTCGACAACGGTGTATGTTCACTCCGCGAAGACGTTGGTCGCCGAGAAT
GAAGCACCTCTTTATTAAAGTTGAAACTGAATATTCCCCCAAGAATCGAA
CGTCTGGTGAGCTCGTGCACCGATCCGAAATCCCGCAGTAAACAGCGGAC
GCAGGATCACGACAACCCCTTTTTCAAAAAGTGTTTCAGTGTCTCCTGTT
TCGCTGTTCATGCATAGGTGTCAGATCATCATCTTTGGCCCGAGAGTCGA
GTTGCTATGTCGACCAATTTTCCAGGTCGTGCCGTAAGGTGCACCGCAGG
AAATCTCAACCTGGTTATAGTAAGCATTTCTCCGAACGTGTATACAGAAT
TTCTTCTTTACTACAATCTCTGAAAAAACGTCGAGCCTGGATGCTTTGGA
CTGCGCAACGTATGTGTACCAAATGGACCAAAATATTGTTACAATCGACT
AAAACACCAAAATGCCCGTTCAAAACGACCCAACCCAGGCTCTTCCCGTG
CCTGCTGCTGTCGTAGGGCGGATGTGATGAACCCAAGAGCAGTGTCGCAA
AGCAACAAGTAATTCAGGGCATGTGCATGCGTATGTGTTTTTATGTATCG
CACATACGCACCCCACGTTTCTGCGAAACGAAATTATTGTTCAGGGTCGC
GGTAGAGGACCACGTGAGAGACATGGAGAGCATGCTGGACGAGGAGCTGA
TCCAGGCGCTGGACGGCTCGATCGCCGAGAAGATGGAGAACAACCACCGG
GAGAAGGCCCGGTAAGGATCCAGCCTATTACGACCATACATACCGTAGCG
TACCGCCATCCGCTTTGATTTGAGTCCCCCTGCAGGCCAACCAAAGCAAC
AGGCGCTTTCAAAGCTCTTCAAAGTTATTGACTTTTTGACTAATAAAGCG
CCTATAGACATCCATCCATCAGATCCGAATTTTCGAGCCAGCTACATGTA
GTACATATGTAGCCGTTCTCTTCAGATACTGCGGGCTGAAATATGTATCA
CATTCCTTCCTTAAGTTGGTGTTGCCACTTCGTTGCGAACCAGAGGGAAA
GAGCGATATGAGTATGAAGCCCTAACGGCGTTGCTCGTTCACTTCTCACC
CGCGAAGGTTCACTCGGAGAGCACTCTATCTAATGGACTGAAAACGACCC
TACTTGAAAAATAAATATGGAGACGAGCGTGCTGTGGACAAAAATGAACA
AAAATCGACAAACAAGGGTACATAAAGACAAGAGAGAGAGGGACACGATG
TGTTCCGCACATCGCCGCGTGCACCAAGCACTTGAAACGCAGCCAGCGCC
GGCCATGAAACGGGGGTCGATTTGTCTGCACATGAACCACAAATTCGCAT
GCCCTTCCGGAGGCTGTTGTTTCTTATCTTATCTTATCTCTCTATTATTC
TTGTGCAGGGCTCGCAAGATCGAGAATCTCATGTCGGCCTTCTTCTGCGA
CCCTAGGGTGCCCAAGGCGCAGCGCGTCGCCTAGGGAGCGAGTGATACTG
GTCAGTTCCCAAGGCATCGGCAGCCCTGCCTTCGTCAGTAGTATAATAGG
TCGATGGAGCCAATTTTTCAGCAGGGTCAGCATCTAGTCGAGGGCGCAGG
GTATTTGTTCCGGTTGGTGGTTGCTTGCGAACTAATATCTATGCAGATAC
AGCACAATACATATCTGTACTTTCTCTGCTATCCTAACCCCAAAACACTT
GGGGAGTAGCTCGCTCAATTCCGACGATCTTCCCTTTGCCTCTTTTGAGC
AATGCCTCCTACAGTAAAGTCTAACGGAGTGCGCACCTCGATTTTCTGAA
TTTCGAACCCTAGAGATTGATACGCTTGTGCAGCAACAGCAGTCTAGATA
GCCTTATCGTGGATATAATCTGAACTCGAAATGTACCAGCGGGCGTGAAT
CTGCCTCTGTTGGCGAAAAGGAACCCCCCTGCCAACAAACGGTACAACGT
TGTTCTTGGAGGTAGCCGCGTCTTTCATGCGGAAGGAAGAACGCAGGGTT
TCCAAGCTACAACCTAGTTAGGCCTAACCCAACCCTAAACCCAAACCCTA
ACCCTAACTCTAACTCCAACCCTCACCCAACTTTCCAAGCTAGGTTGGTG
TGCATTGTTTAGGTTCTAGGTCGCTGTACCCGGTCAAACAGCTTGTTCAC
AAGGGGGTTAGCAGATTCCCGGGCGCCACGAAATGTACTATGAGGCCAAA
AATCCAAAGGCTAATGTAAGTTCATGTTGTGGACCGACGCGTCTCGACAG
ACATATCGTGTGAAACCGCTTGGGGTCTGGGCCACGTGCGTGGTGCATAA
GGTTGTCAAGGGGGCTACGTGGCGATTTATCTTGGACATTTCTCTGTTGT
ACCGCGATCTATCCACGTGCGTCTCGTGCAGGTGCCGGGAAGAGACCCAC
GGAGCACCCCTGTTTCTGTCGTGTGGGCTACTGCTGTACCATCACAGACG
CCCAAAAAAATCGTGTCGGACGCGATCAGTTGGCACGTCTCACCGGTGAT
GATTATCTATTCTGTCCACATAGACTAGACTATACCAGTACCTGGTACAT
ATGCCTCTACCAAAACGGCCCAACTTTTTCGATCTGGAGCACCAGCTCAT
CGTTACCAGAAAGCTGGCGTGCGGCGGAGCTGGACTCCGACATGGTCTAG
CCTATCCCCCCAAGAGCCAGCTACTATAGACTATATCTACACGTACGTTG
TTTGGGGTTTGTTTGGGAGAGAGGGTCTGAATATTCTGCGCGCGGTGTCG
AGGACGCTAGGGGTTGAGCCGGTCTCCTCCATGGAAGAGGTGGAAGCTAG
CGTACTAAACCTCCTGTGTGACCCCGGTTGGGCTGTTTAGCTAGTCGTTG
AGTAGGAAGGGGGCCAGTGGCGCAGACGACAAATATGCCACTGATGGGCG
GAAAAAGAAAAGTGTCTCGCCCGGCACAACAACGCTCTCGGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1088:14812..19304+

>mRNA_L-elsbetiae_contig1088.805.1 ID=mRNA_L-elsbetiae_contig1088.805.1|Name=mRNA_L-elsbetiae_contig1088.805.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=972bp|location=Sequence derived from alignment at L-elsbetiae_contig1088:14812..19304+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTTCTGGACGATGGTGGTGGCGGCGGATCGGGGGTCGACGGCGACGA
TTGCGACGACGGCACCGCCGGCGGCGAAGACGAAGACGAAGTCGAAGAAG
TCGAAGACGAAATCGAAGAAGTCGAAGACGAAGACGACGAAGATGGCGGT
TTCGGCTTCCGCCTGCCGGACGCGGAGATCGACGCCGAAGAGTCTCGGGT
GAAGACGATGTTTCTGGACGATGGTGGTGGCGGCGGATCGGGGGTCGACG
GCGACGATTGCGACGACGGCACCGCCGGCGGCGAAGACGAAGACGAAGTC
GAAGAAGTCGAAGACGAAATCGAAGAAGTCGAAGACGAAGACGACGAAGA
TGGCGGTTTCGGCTTCCGCCTGCCGGACGCGGAGATCGACGCCGAAGAGT
CTCGGGTGAAGACGGTCCAGCGCCAGCAGTGGCTGCGGCGAAAGGACGCC
GCCATGGCAAACTTCCGCAGAGAATGCGAGGCGGAGGTGGCGCGCGTCAG
GTCCAGCGCCAGCAGTGGCTGCGGCGAAAGGACGCCGCCATGGCAAACTT
CCGCAGAGAATGCGAGGCGGAGGTGGCGCGCGTCAGGGTCGCGGTAGAGG
ACCACGTGAGAGACATGGAGAGCATGCTGGACGAGGAGCTGATCCAGGCG
CTGGACGGCTCGATCGCCGAGAAGATGGAGAACAACCACCGGGAGAAGGC
CCGGGTCGCGGTAGAGGACCACGTGAGAGACATGGAGAGCATGCTGGACG
AGGAGCTGATCCAGGCGCTGGACGGCTCGATCGCCGAGAAGATGGAGAAC
AACCACCGGGAGAAGGCCCGGGCTCGCAAGATCGAGAATCTCATGTCGGC
CTTCTTCTGCGACCCTAGGGTGCCCAAGGCGCAGCGCGTCGCCTAGGGCT
CGCAAGATCGAGAATCTCATGTCGGCCTTCTTCTGCGACCCTAGGGTGCC
CAAGGCGCAGCGCGTCGCCTAG
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