mRNA_L-elsbetiae_contig1087.796.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
|
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1087.796.1 vs. uniprot
Match: A0A6H5J9W9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9W9_9PHAE) HSP 1 Score: 318 bits (814), Expect = 6.720e-97 Identity = 287/617 (46.52%), Postives = 342/617 (55.43%), Query Frame = 1
Query: 1 VASVGGEYSEIVETSCGASVFAAGTTIYELSGYD-LEPRILEVWDLSA-DDCTIEDVPSTADCFSGVMDMSLGDGITMTLTNCFCVFTEGLSTFYRSKVSANVVGASTISIPSGEIEVCLDAGFISQLVTAEVEGETFLYNFDLVVPGMDSSADLSV-ASVSAAAQSFICGEVE----PTPSPV----------SPTPEXTTVAPVVXXXXXXXXXXXXXXXXXXXXXXXXXXVTPIPXXXXXXXXXXXXXXXXXXXATGAPEPALPETAPPXAAAVGSAXXVALPSP----------------------------------------------------------APSPLPGAGDTPAPEAIVATSEGASSSTVLAPGETLAPSAGAGVDGS--------ASPTAVATTLAPTERSRSAATVAPVDGEDVEGRECELPEEDSCTSVTAVVQ-INQGIGSFYDPACSPT----TEGGELPEGCEPNSPGSCRICLFNTPRWETKNPGGELPDWVDCPCCVLAVYQEDTATNADGPRCECERMNVHSAGRHQRSGEVITPAPTVGTPPPSTDGPVSDTDMAAGLFEDKPLRVSEGGLDLGLVALAVLGVLTFFPVCVK 1587
V SV G++SEI ETSCG SV A G+T+YELSG L R LE ++S+ DDC+I VPSTA+C++G M+L ++M LT C C + +G T YRS+V A VVGAS +S+P EIE+CL+AGFI QL TA VEGE + YNFDLVVPG DSS+DLSV A+ AQ+FICGE+E PTPSPV P PEX XXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXX XXVA P+P AP LP +TPAP V G +SS AP++ GVDG +PT+VAT+ E G ++EG+EC +PE CTS + NQG+GSFYDP C+ +E GELPEGC+P+S SCR CLFNTPRW+ KNPG +LPD VDCPCCVL +Y+EDTA N DG RCE +TPAP T PST P++ T LFEDKPL + G LD G+VAL +L +LTFFPVCVK
Sbjct: 145 VVSVDGDHSEIAETSCGTSVMAVGSTVYELSGDGALGSRSLEAVEMSSSDDCSITGVPSTAECYTGDTAMALDGDVSMALTICLCYYMDGSRTVYRSQVFAEVVGASAVSVPGDEIEICLEAGFIMQLTTATVEGEDYHYNFDLVVPGRDSSSDLSVSAAPDEDAQAFICGELEELEEPTPSPVXXXXXXXEPTEPPPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------------XXXXVAAPTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPV-LPLPVETPAPSPAV---RGLASS---------APTS-VGVDGGXXXXXXXXVAPTSVATSTGEGE------------GNNMEGQECMIPEGAPCTSTASTFSHTNQGVGSFYDPTCAAAAATASEEGELPEGCDPSSADSCRFCLFNTPRWQDKNPGEDLPDLVDCPCCVLDIYKEDTAINEDGVRCEW-----------------MTPAPVASTSEPSTVVPLTITRTEL-LFEDKPLNLGGGSLDAGVVALGLLALLTFFPVCVK 702
BLAST of mRNA_L-elsbetiae_contig1087.796.1 vs. uniprot
Match: D8LE44_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE44_ECTSI) HSP 1 Score: 213 bits (543), Expect = 3.770e-61 Identity = 190/434 (43.78%), Postives = 231/434 (53.23%), Query Frame = 1
Query: 64 AAGTTIYELSGYD-LEPRILEVWDLSA-DDCTIEDVPSTADCFSGVMDMSLGDGITMTLTNCFCVFTEGLSTFYRSKVSANVVGASTISIPSGEIEVCLDAGFISQLVTAEVEGETFLYNFDLVVPGMDSSADLSVASVSAAAQSFICGEVEPTPSPVSPTPEXTTVAPVVXXXXXXXXXXXXXXXXXXXXXXXXXXVTPIPXXXXXXXXXXXXXXXXXXXATGAPEPALPETAPPXAAAVGSAXXVALPSPAPSPLPGAGDTPAPEAIVATSEGASSSTVLAPGETLAPSAGAGVDGSASPTAVATTLAPTERSRSAATVAPVDGEDVEGRECELPEEDSCTSVTAVV-QINQGIGSFYDPACSPT----TEGGELPEGCEPNSPGSCRICLFNTPRWETKNPGGELPDWVDCPCCVLAVYQEDTATNADGPR 1344
A G+T+YELSG L R LE ++S+ DDC+I VPSTA+C++G M+L ++MTLT C C + +G T +RS+V A VVGAST+S+P EIE+CL+AGFI QL TA VE E + YNFDLVVPG DSS+DLSV++ +P X XXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXX G ++EG+EC +PEE CTS A + NQG+GS+YDP C+ +E GELPEGC+P+S SCR CLFNTPRW+ KNPG +LPD VDCPCCV+ VY+EDTA + DG R
Sbjct: 2 AVGSTVYELSGDGALGSRSLEAVEMSSSDDCSITGVPSTAECYTGDTAMTLDGDVSMTLTICLCYYMDGSKTIFRSQVFAEVVGASTVSVPDDEIEICLEAGFIMQLTTATVEDEDYYYNFDLVVPGRDSSSDLSVSA-----------------APXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------------------------------------------------------------------------------------------GNNMEGQECMIPEEAPCTSTAATIAHTNQGVGSYYDPTCAAAAATASEEGELPEGCDPSSADSCRFCLFNTPRWQDKNPGEDLPDLVDCPCCVVDVYKEDTAISEDGVR 317
BLAST of mRNA_L-elsbetiae_contig1087.796.1 vs. uniprot
Match: A0A6H5J9X3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9X3_9PHAE) HSP 1 Score: 205 bits (522), Expect = 1.230e-55 Identity = 217/542 (40.04%), Postives = 285/542 (52.58%), Query Frame = 1
Query: 1 VASVGGEYSEIVETSCGASVFAAGTTIYELSGY-DLEPRILEVWDLS-ADDCTIEDVPSTADCFSG-VMDMSLGDGITMTLTNCFCVFTEGLSTFYRSKVSANVVGASTISIPSGEIE-VCLDAGFISQLVTAEVEGETFLYNFDLVVPGMDSSADLSVA-SVSAAAQSFICGEVEP--TPSPVSPTPEXTTVAPVVXXXXXXXXXXXXXXXXXXXXXXXXXXVTPIPXXXXXXXXXXXXXXXXXXXATGAPEPALPETAPPXAAAVGSAXXVALPSPAPSPLPGAGDTPAPEAIVATSEGASSSTVLAPGETLAPSAGAGVDGSASPTAVATTLAPTERSRSAATVAPVDGEDVEGRECELPEEDSCTSVTAVVQINQGIGSFYDPACSPTTEGGELPEGCEPNSPGSCRICLFNTPRWETKNPGGELPDWVDCPCCVLAVYQEDTATNADGPRCECERMNVHSAGRHQRSGEVITPAPTVGTPPPSTDGPVSDTDMAAGLFEDKPLRVSEGGLDLG------LVALAVLGVLTFFPVCVK 1587
+ SV G+YSEI++TSCG S A G+T+YELSG DL+ R+LEV D++ + C D P TADC+S ++L D + + LT ++TE STFY+S + V G + + E E C + F+SQ+ V G T+ YNF+ +PG +S+DLSV+ + S++A++FICGE P TPSPV+P+ XXXXXXXXXXXXXXXXXXXXXXXXXX T I XXXXXXXXX T AP+ A TA P XX A + A LP G+ T P G G D +A+P+ L ++ S D ED EG C LPE CT T+ N+GIG +YDPAC EG E GC ++ CR+C FNTP + K+P +LPD+ DCPCCVL +Y++D A N DG RC +PAP+ P T+ PV + F+D L +GG ++ L AL +L LTFFP C K
Sbjct: 101 IVSVDGDYSEILDTSCGTSAVAVGSTVYELSGAGDLDSRVLEVLDMTPSSTCVTADTPDTADCYSAPTTTVTLTDDVYVELTFNIGIWTEDGSTFYKSFTNTKVFGTTVVEY---EFESFCYENEFLSQVFLVTVLGTTYKYNFEFALPGEPTSSDLSVSGAASSSAEAFICGEDLPATTPSPVTPS--------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAI-------AAAAXXXXXXXXXXTEAPQAAAAATAAPVXXXXXXXXXPANTTTAAPTLPAVGNV----------------------MTETPVGGGGDDLAATPSPTVLVLVNNTQAPS------FDYED-EGA-CILPESKPCTEATSFSNTNEGIGDYYDPACE-LVEGEEQLGGCNADASSLCRMCFFNTPLYVAKHPDEDLPDYPDCPCCVLDIYEQD-AFNLDGQRCVS-----------------ASPAPSS---PALTEIPVGEITPRG--FDD--LSFDDGGWEMNAGEVAALSALGLLAALTFFPFCSK 568
BLAST of mRNA_L-elsbetiae_contig1087.796.1 vs. uniprot
Match: A0A6H5JBT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBT9_9PHAE) HSP 1 Score: 163 bits (412), Expect = 5.720e-40 Identity = 192/598 (32.11%), Postives = 246/598 (41.14%), Query Frame = 1
Query: 1 VASVGGEYSEIVETSCGASVFAAGTTIYELSGYDLEPRILEVWDLSADDCT----IEDVPSTADCFSGVMDMSLGDGITMTLTNCFCVFTEGLSTF-YRSKVSANVVGASTISIPSGEIEVCLDAGFISQLVTAEVEGETFLYNFDLVVPGMDSSADLSVAS-VSAAAQSFICGEVEP-------------------TPSPVSPTPEX--TTVAPVVXXXXXXXXXXXXXXXXXXXXXXXXXXVTPIPXXXXXXXXXXXXXXXXXXXATGAPEPALPETAPPXAAAVGSAXXVALPSPAPSPLPGAGDTPAPEAIVATSEGASSSTVLAPGETLAPSAGAGVDGSASPTAV-----------------------------------------ATTLAPTERSRSAATVAPVDGEDVEGRECELPEEDSCTSVTAVVQINQGIGSFYDPACSPTTEGGELPEGCEPNSPGSCRICLFNTPRWETKNPGG-ELPDWVDCPCCVLAVYQEDTATNADGPRCECERMNVHSAGRHQRSGEVITPAPTVGTPPPSTDGPVSDTDMAAGLFEDKPLRVSEGGLDLGLVALAVLGVLTFFPVCVK 1587
VA V GEYSE+VETSCG+S G+T+YELSG D R L V DLSADDC I PS ADC+SG + + LT C C + EG + Y + V A+V IS+P + +C D G SQLVT + +F Y FDL VPG +S+ DL V+S S+ AQ+ C E TPSP + E TT APV XXXXXXXXXXXXXXX P ++ G + + AP + DTPAP T + G + A VD +PT A T PT S T+AP+ E++E C P + CT+ T IN+G+G++YDP CS GC G CR C FN E N ++PD+ +CPCCV+ Y +AD RC TP+P GT T+ + FEDKPL +S GG + ALA+ G+LTF P+C K
Sbjct: 113 VAKVEGEYSEVVETSCGSSAILVGSTVYELSGVDFGGRSLGVADLSADDCAGDGVIPTAPSDADCYSGESPIDVEGSTGAELTFCHCKWNEGENVAKYATNVRASVKDYVDISVPDSGLVMCQDQGVFSQLVTVLADDSSFYYLFDLDVPGYESAEDLVVSSGPSSDAQALACSVDEEGXXXXXXXXXXXXXXXXXETPSPTTAVEEEPQTTPAPVTXXXXXXXXXXXXXXXSLQ----------------------------------------------PDSSTAGQGATSSSTTAAPVEV----DTPAP-------------TPASRGLGTPXXSSAAVDAPPAPTQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAVTPGPTVVLYSE-TLAPLTEEELEQVACTWPLDGPCTTETLFSDINRGLGAYYDPGCSGA--------GCGVGDSGLCRTCYFNLTMGEEGNDDDVDMPDYPECPCCVMDEYDR----SAD--RCV-----------------GATPSPAQGT---GTEA------LETYSFEDKPLDMS-GGEGFAVAALALFGLLTFLPLCTK 605
BLAST of mRNA_L-elsbetiae_contig1087.796.1 vs. uniprot
Match: D8LE46_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE46_ECTSI) HSP 1 Score: 94.4 bits (233), Expect = 3.370e-19 Identity = 58/145 (40.00%), Postives = 85/145 (58.62%), Query Frame = 1
Query: 1 VASVGGEYSEIVETSCGASVFAAGTTIYELSGY-DLEPRILEVWDLS-ADDCTIEDVPSTADCFSG-VMDMSLGDGITMTLTNCFCVFTEGLSTFYRSKVSANVVGASTISIPSGEIE-VCLDAGFISQLVTAEVEGETFLYNFD 423
+ SV G+YSEI++TSCG S A G+T+YELSG DL+ R LE+ D++ + C D P TADC+S ++L D + + LT ++TE STFY+S + V G + + E E C + F+SQ+ V T+ YNF+
Sbjct: 3 IVSVDGDYSEILDTSCGTSAVAVGSTVYELSGVGDLDSRGLELLDMTPSSTCVTADTPDTADCYSASTTTVTLTDDVYVELTFNIGIWTEDGSTFYKSFTNTKVFGTTVVEY---EFESFCYENAFLSQVFFVTVLDTTYKYNFE 144
BLAST of mRNA_L-elsbetiae_contig1087.796.1 vs. uniprot
Match: D8LE45_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE45_ECTSI) HSP 1 Score: 61.2 bits (147), Expect = 2.100e-8 Identity = 29/67 (43.28%), Postives = 40/67 (59.70%), Query Frame = 1
Query: 1213 ICLFNTPRWETKNPGGELPDWVDCPCCVLAVYQEDTATNADGPRCECERMNVHSAGRHQRSGEVITP 1413
+C FNTP + K+P +LPD+ DCPCCVL +Y++D A + DG R M + + QR V TP
Sbjct: 1 MCFFNTPLYVEKHPDEDLPDYPDCPCCVLDIYEQD-AFSLDGQRFP---MLLLARAHRQRPCSVTTP 63 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1087.796.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1087.796.1 >prot_L-elsbetiae_contig1087.796.1 ID=prot_L-elsbetiae_contig1087.796.1|Name=mRNA_L-elsbetiae_contig1087.796.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=530bp VASVGGEYSEIVETSCGASVFAAGTTIYELSGYDLEPRILEVWDLSADDCback to top mRNA from alignment at L-elsbetiae_contig1087:15995..24734- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1087.796.1 ID=mRNA_L-elsbetiae_contig1087.796.1|Name=mRNA_L-elsbetiae_contig1087.796.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=8740bp|location=Sequence derived from alignment at L-elsbetiae_contig1087:15995..24734- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1087:15995..24734- >mRNA_L-elsbetiae_contig1087.796.1 ID=mRNA_L-elsbetiae_contig1087.796.1|Name=mRNA_L-elsbetiae_contig1087.796.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3180bp|location=Sequence derived from alignment at L-elsbetiae_contig1087:15995..24734- (Laminarionema elsbetiae ELsaHSoW15)back to top |