mRNA_L-elsbetiae_contig10864.793.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10864.793.1
Unique NamemRNA_L-elsbetiae_contig10864.793.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig10864.793.1 vs. uniprot
Match: D8LQT9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQT9_ECTSI)

HSP 1 Score: 158 bits (399), Expect = 5.850e-39
Identity = 113/216 (52.31%), Postives = 130/216 (60.19%), Query Frame = 2 
Query:    2 GDELVLSPKWSLVATRRDQGVEWRRGATTPRFAETRTARGGMRGAASEEAEGEEETSLDLIGVEAARANASRWRGSAVARLRDLDMSKTSGRPPSLFGIPERHHRGSSVPSAPAIGGQTKTAAAAAAFSDDELRDDRLMEGQRLQLHVAVDPPSQLSASSARAAQFSVRRTGAGVVRFAAPYSSSCTSPTRSSPMAQRGGIKGRRLQTTTATGVSA 649
            GDEL+LSP+WS +ATR  Q  EWRRG+TTPRF ET    GG+  A  EE EG     LDL+GVEAARA  SRWRGSA     D+DMSK   RP SLFGIPERH R +    AP+ G       AAAAF+DDELRDDRLMEGQRLQLHV        S S+A      V+      VRF A  SS   +PT  SP+     + GRR  T+  T  +A
Sbjct: 1809 GDELILSPRWSFLATRPSQAAEWRRGSTTPRFLETLA--GGLAEATVEEGEGSPR--LDLVGVEAARAKLSRWRGSAAVPPLDVDMSKIQSRPSSLFGIPERHVRHA----APSGG-------AAAAFTDDELRDDRLMEGQRLQLHVG-------SGSTATPRPRLVQG-----VRFGAARSS--RTPTLLSPLLLAMPLPGRRANTSAVTPTAA 1995
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10864.793.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQT9_ECTSI5.850e-3952.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10864contigL-elsbetiae_contig10864:2139..5881 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1076
Cds size918
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10864.793.1prot_L-elsbetiae_contig10864.793.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10864 2173..5757 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815304.8555336-UTR-L-elsbetiae_contig10864:2138..21721622815304.8555336-UTR-L-elsbetiae_contig10864:2138..2172Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10864 2139..2172 -
1691682827.9519634-UTR-L-elsbetiae_contig10864:2138..21721691682827.9519634-UTR-L-elsbetiae_contig10864:2138..2172Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10864 2139..2172 -
1622815304.8974268-UTR-L-elsbetiae_contig10864:5757..58811622815304.8974268-UTR-L-elsbetiae_contig10864:5757..5881Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10864 5758..5881 -
1691682827.9907842-UTR-L-elsbetiae_contig10864:5757..58811691682827.9907842-UTR-L-elsbetiae_contig10864:5757..5881Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10864 5758..5881 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815304.8647392-CDS-L-elsbetiae_contig10864:2172..29211622815304.8647392-CDS-L-elsbetiae_contig10864:2172..2921Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10864 2173..2921 -
1691682827.9640274-CDS-L-elsbetiae_contig10864:2172..29211691682827.9640274-CDS-L-elsbetiae_contig10864:2172..2921Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10864 2173..2921 -
1622815304.8771434-CDS-L-elsbetiae_contig10864:4588..46951622815304.8771434-CDS-L-elsbetiae_contig10864:4588..4695Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10864 4589..4695 -
1691682827.9731786-CDS-L-elsbetiae_contig10864:4588..46951691682827.9731786-CDS-L-elsbetiae_contig10864:4588..4695Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10864 4589..4695 -
1622815304.8872597-CDS-L-elsbetiae_contig10864:5695..57571622815304.8872597-CDS-L-elsbetiae_contig10864:5695..5757Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10864 5696..5757 -
1691682827.981701-CDS-L-elsbetiae_contig10864:5695..57571691682827.981701-CDS-L-elsbetiae_contig10864:5695..5757Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10864 5696..5757 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10864.793.1

>prot_L-elsbetiae_contig10864.793.1 ID=prot_L-elsbetiae_contig10864.793.1|Name=mRNA_L-elsbetiae_contig10864.793.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=306bp
MRGAASEEAEGEEETSLDLIGVEAARANASRWRGSAVARLRDLDMSKTSG
RPPSLFGIPERHHRGSSVPSAPAIGGQTKTAAAAAAFSDDELRDDRLMEG
QRLQLHVAVDPPSQLSASSARAAQFSVRRTGAGVVRFAAPYSSSCTSPTR
SSPMAQRGGIKGRRLQTTTATGVSAQAATTQQQEEVEANNRSGDEPRAIS
RAPTGLSASRTQNGELGGCGVGADRHGKKKNRLAAVVLLLGGVTRGRNCS
RRQTFAGEHLPSAAAAAAAEAAAAQAQAGGGGEEEFLNGTRMKDDDVIAR
RTLGR*
back to top

mRNA from alignment at L-elsbetiae_contig10864:2139..5881-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10864.793.1 ID=mRNA_L-elsbetiae_contig10864.793.1|Name=mRNA_L-elsbetiae_contig10864.793.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3743bp|location=Sequence derived from alignment at L-elsbetiae_contig10864:2139..5881- (Laminarionema elsbetiae ELsaHSoW15)
AGGTGACGAGCTGGTTCTGTCTCCGAAGTGGTCGTTGGTGGCGACCCGAC
GGGACCAAGGTGTAGAGTGGCGCCGAGGGGCGACGACGCCTCGCTTCGCG
GAAACCCGCACGGCGCGGGGGGGAATGAGAGGAGCGGCGAGCGAGGAGGC
GGAAGGGGAAGAAGAAACAAGCCTGGATCTCATCGGGTAAATAGATAATC
ATTTAATAATACATACGCTTTGAAAGAAAATCCGCTATTATCTAGTTAGT
CTAGTTAATCAAACACGGAAACAACCTAATAAGAAACGAGCCTGGATCTA
ATGGGGTAGATAATAATTTAATAATACATACGCTTTGAGAGAAAATCCTC
TATTATCTAGTTAGCTATTAATCAAACACGGAAACAGCCTAATAACCCAC
ATTAGAGAAGGGACTGACTCCATGGGATTCAACTTGTATTCCATACCATA
CGCTTATTTATGTAGATAATTTCTTAGAAAAAAAAAGGCAATATTTAGCT
AGACTTAAGTCGAATAATAATAATATTAAAAACAAAATATTGACTATGGG
GTATGGAGTGGTTTCTTCGAAGTTCAACAACAAGATAACAAAGAAAAAAA
AATGATTATTCCTCTTCTTGCAGGTTAAATAGGACGTTTTTTGTTTTTGC
GTCAGCCGTGAAAACCCAACGCGTGCTTCGATTCTAGCTACTGTAGTTCT
CGATCGAGTGGGACATTGTATCTATCTATGTGTTATTGTATCTATGTATG
TATATAGCTGTCGCCACCAATCCTCCGCACTGACTGAGATGGAGCTTCCG
CCGCTCGGTTCCAATTTCTTCACGTATGTATGCATGTTGTACGTCGTGCG
GGGGGGGGGGGGAGGGAGGCGATTGGCAGTCAAGGATGTATGTGTCAAAC
GAAGCCCTCATGGTCTCATCTCGATCACACGCGTTGTTGGCAAAGTTACC
ACCACCGCGTTGCCTCCCATCCTCCTCCCGCCCACCGTGTGGTTGAAATA
TGAGCGAGCGTTCGAACTCCAGAAGCCCACGCTGGAGGAGGTAACTGTAC
GGCACGAGAGGCAGAGAGCAGTTATCTCTGCCGGGAAGATGATGTTACCA
AACAAACGGTCGCTGCAACATATGTAGTCTATACTCCGTATAACATACCA
TACGTTCTTATACTTGTTTTGCTTAATAATAAGCAGGGTAGAAGCTGCAA
GAGCGAACGCTTCCCGCTGGAGGGGCTCAGCGGTGGCGCGTTTGCGGGAT
CTGGACATGTCGAAGACCTCGGGCAGGCCCCCTTCCCTCTTCGGTTAGTT
CCGTGCGGCTCGTTTGATCTCAGCCAACCGCCCTCTGGGCATCTCGACGA
CACTTTTCTTCGAACTCTTCGTTCTGAATCTATTTTTTCCTTGTGTTCAC
ATACAATATGTACATCAGATTACAACAGTAAAATTATTATTGCTCTTCTT
GCCTTCAACACGTTCTCGCTATCTATCTACGGTAGTATCCCTCGAGAAAG
CCCCCTTCGGAGAGGACGCCCCCCCCCCCCCAACTACGGCCGGTGCGCAC
CCCGAAAACCTTGCGAACGCCCCGGGGTGCCCCAACTTTTTATTTTTCAT
TAAATGAAATGGCTCCTCTACTGTACCTTTGAGAACGCCCCCCCGGGCGT
TCTTTTGGGGAGGGGGAGGTCACAGAAGAACTGCTGCTTGTGTTCCAACA
GCATAATGCAGCTTTTTGTTTCCTTTTGTTGTTGTTGTCGGAGGCGATGG
TGATGGTGCTGTTTTTGAAGACCATCGCCCCCCGGTGGTCTAGTTGGTAC
CCCCCAAACAAACACCTTCTAGCAGGCAGATCGCGAGTTCGAAGTTCAGC
GGAAGCGACTTTTTCTTGCGAGAAGTGATTTTTTTTTGTCTTGCTTTTCC
GTCCCTCCCTGTCAGTGGATAGCGCTTACATACATAACGTGTGTACACAA
ACTTCGACCTCACCGTCGACGAGGGAAAGGGATGGCTGGACCCTTCTGGC
GGCAAAAATCTTAAGGGGGGCAAGCACCGCAGACGGGGGGAGGAGTGGGG
GCCTTGGGGAAATAAACTCTTCTGTAGGACCACGGTTCTTCAGTACTCTG
GCAAAAGATGTCCTCGTGACAGGAAGAAGAGCCCATCGAGCATTGGAAAT
AATTGTGAAGATAAACGTGTTCGATTATTTAACGTCCCGAGGGCGAAGTT
TCCACAGGAAAAAAAAAGCACCACGCCTTTGGGGACTCTTCGCTCGAGCA
GCGAGGCGTTTTTACTGTTTTTGGAAATATCGCCTCCCTCCCTACTAGAC
TATTGAGATGTCCTGGGGGCTTTATTTTTCACCTGTAATGAATGTTAGAC
CCCCCCCCCGGGGCGTTCTCAAGGGGAATTACGGTATGTAGAAGACATGC
TATCTATTTGCAATGCCTGAGAGGAAAATGTCTTCGCTTGTCGTCTAGGG
TTGGTTGTTGTGGTGATATGTACTCCGTATGTAACTGTAGTGTTTCTGTC
GGTCATGATGAACTTCTAATTGATGACAGACATTCATACATACATGCAAA
ATTATAATCAAAAACAAACCCGGTTGCTCCATTTTTGAGATCCCCCACTA
ATAATATAGAAGTATCTGCATACGTGTGTCGGAGTCTCACTTTGATGGAC
CCGACGTTTATTTCAGTAAATAAGCGAGCAGGGGACCGCCCAACCAATTG
TTTGGCGAGATACACGGGGGGGGGGAGGGGGGGTCGGAGAAGAGTGCTCC
TCTTGACCTCCTCGGAATGTTCAAAACAGGTAAAACAGACGAAAAATGTG
GTGTTTAATACTTCTATAGCGATGGCGATGATGCCTAACTACTACAACAC
CCGGTTGTAGATACAATGGTACAAAGGGCTGCTGCCGCCTTGTGGGTTGC
TGATGTGGCATTCATTTAACGTGCGTTCTCTGGTGGGTGGTGTGGCGGCG
ATGATGGCAGGAATCCCCGAGCGGCACCATCGGGGGTCGTCGGTACCGTC
CGCACCCGCCATCGGCGGCCAAACGAAGACGGCGGCAGCGGCGGCAGCCT
TCTCCGATGACGAGCTTAGAGACGACCGCCTCATGGAAGGGCAGCGGCTG
CAGCTTCACGTTGCTGTCGATCCGCCGAGCCAGTTATCAGCATCATCAGC
GCGGGCGGCGCAGTTTTCAGTAAGAAGAACAGGAGCGGGGGTGGTGCGAT
TTGCGGCGCCTTATTCCTCCTCTTGTACCTCCCCCACGCGCTCGTCGCCG
ATGGCTCAACGCGGCGGAATAAAGGGGCGGCGGCTGCAGACTACAACCGC
CACCGGCGTCTCCGCTCAGGCGGCAACGACACAACAACAAGAAGAGGTAG
AAGCCAACAACCGTAGTGGAGACGAACCTCGTGCCATATCACGCGCGCCT
ACGGGGCTGTCGGCCAGTCGCACCCAGAACGGAGAGCTGGGTGGCTGCGG
TGTCGGTGCGGATCGCCATGGGAAAAAAAAAAACAGATTAGCAGCGGTGG
TATTATTATTAGGAGGAGTGACAAGAGGGCGGAACTGCTCGCGGCGACAA
ACCTTCGCCGGAGAGCATCTGCCCAGCGCAGCAGCGGCGGCGGCGGCGGA
AGCGGCGGCAGCGCAAGCGCAAGCGGGGGGGGGCGGAGAAGAGGAGTTTC
TCAACGGCACGCGAATGAAGGACGACGACGTGATCGCGAGGCGGACGCTA
GGGCGATGATCGACGAAATGGACCGTGCTTTCCGCCGCGACGT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig10864:2139..5881-

>mRNA_L-elsbetiae_contig10864.793.1 ID=mRNA_L-elsbetiae_contig10864.793.1|Name=mRNA_L-elsbetiae_contig10864.793.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1836bp|location=Sequence derived from alignment at L-elsbetiae_contig10864:2139..5881- (Laminarionema elsbetiae ELsaHSoW15)
ATGAGAGGAGCGGCGAGCGAGGAGGCGGAAGGGGAAGAAGAAACAAGCCT
GGATCTCATCGGATGAGAGGAGCGGCGAGCGAGGAGGCGGAAGGGGAAGA
AGAAACAAGCCTGGATCTCATCGGGGTAGAAGCTGCAAGAGCGAACGCTT
CCCGCTGGAGGGGCTCAGCGGTGGCGCGTTTGCGGGATCTGGACATGTCG
AAGACCTCGGGCAGGCCCCCTTCCCTCTTCGGGTAGAAGCTGCAAGAGCG
AACGCTTCCCGCTGGAGGGGCTCAGCGGTGGCGCGTTTGCGGGATCTGGA
CATGTCGAAGACCTCGGGCAGGCCCCCTTCCCTCTTCGGAATCCCCGAGC
GGCACCATCGGGGGTCGTCGGTACCGTCCGCACCCGCCATCGGCGGCCAA
ACGAAGACGGCGGCAGCGGCGGCAGCCTTCTCCGATGACGAGCTTAGAGA
CGACCGCCTCATGGAAGGGCAGCGGCTGCAGCTTCACGTTGCTGTCGATC
CGCCGAGCCAGTTATCAGCATCATCAGCGCGGGCGGCGCAGTTTTCAGTA
AGAAGAACAGGAGCGGGGGTGGTGCGATTTGCGGCGCCTTATTCCTCCTC
TTGTACCTCCCCCACGCGCTCGTCGCCGATGGCTCAACGCGGCGGAATAA
AGGGGCGGCGGCTGCAGACTACAACCGCCACCGGCGTCTCCGCTCAGGCG
GCAACGACACAACAACAAGAAGAGGTAGAAGCCAACAACCGTAGTGGAGA
CGAACCTCGTGCCATATCACGCGCGCCTACGGGGCTGTCGGCCAGTCGCA
CCCAGAACGGAGAGCTGGGTGGCTGCGGTGTCGGTGCGGATCGCCATGGG
AAAAAAAAAAACAGATTAGCAGCGGTGGTATTATTATTAGGAGGAGTGAC
AAGAGGGCGGAACTGCTCGCGGCGACAAACCTTCGCCGGAGAGCATCTGC
CCAGCGCAGCAGCGGCGGCGGCGGCGGAAGCGGCGGCAGCGCAAGCGCAA
GCGGGGGGGGGCGGAGAAGAGGAGTTTCTCAACGGCACGCGAATGAAGGA
CGACGACGTGATCGCGAGGCGGACGCTAGGGCGATGAGAATCCCCGAGCG
GCACCATCGGGGGTCGTCGGTACCGTCCGCACCCGCCATCGGCGGCCAAA
CGAAGACGGCGGCAGCGGCGGCAGCCTTCTCCGATGACGAGCTTAGAGAC
GACCGCCTCATGGAAGGGCAGCGGCTGCAGCTTCACGTTGCTGTCGATCC
GCCGAGCCAGTTATCAGCATCATCAGCGCGGGCGGCGCAGTTTTCAGTAA
GAAGAACAGGAGCGGGGGTGGTGCGATTTGCGGCGCCTTATTCCTCCTCT
TGTACCTCCCCCACGCGCTCGTCGCCGATGGCTCAACGCGGCGGAATAAA
GGGGCGGCGGCTGCAGACTACAACCGCCACCGGCGTCTCCGCTCAGGCGG
CAACGACACAACAACAAGAAGAGGTAGAAGCCAACAACCGTAGTGGAGAC
GAACCTCGTGCCATATCACGCGCGCCTACGGGGCTGTCGGCCAGTCGCAC
CCAGAACGGAGAGCTGGGTGGCTGCGGTGTCGGTGCGGATCGCCATGGGA
AAAAAAAAAACAGATTAGCAGCGGTGGTATTATTATTAGGAGGAGTGACA
AGAGGGCGGAACTGCTCGCGGCGACAAACCTTCGCCGGAGAGCATCTGCC
CAGCGCAGCAGCGGCGGCGGCGGCGGAAGCGGCGGCAGCGCAAGCGCAAG
CGGGGGGGGGCGGAGAAGAGGAGTTTCTCAACGGCACGCGAATGAAGGAC
GACGACGTGATCGCGAGGCGGACGCTAGGGCGATGA
back to top