mRNA_L-elsbetiae_contig10846.779.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10846.779.1
Unique NamemRNA_L-elsbetiae_contig10846.779.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10846.779.1 vs. uniprot
Match: A0A6H5JUU8_9PHAE (CULLIN_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUU8_9PHAE)

HSP 1 Score: 490 bits (1261), Expect = 8.840e-169
Identity = 240/256 (93.75%), Postives = 247/256 (96.48%), Query Frame = 3 
Query:    3 VPMHFEAFTFVLTAGCWPLQSVSSSFKPPAPIEDYVVSFLDFYGEVHSGRKLEWLYHLGHGEMVTHCFDKTYRIYSSTFQMGLLHQFNDTTEIAVSELARGINVSNTEIVRHLFPLIKAGLLRLCGTDGIDLKPSSCDDIPPGSRARLNASFSHKRTRVKINIVDHSRQPLKETKPSTEIIQDRKMSVQAAICRVMKVRKELSHRDLVVQVQEQLRHLFDVDSPFVKRNIEDLINKDYLHRLEGREPGKEGYKYVA 770
            +PMHFEAFTFVLTAGCWPLQSVSSSFKPPAPIEDYVVSFLDFY EVHSGRKLEWLYHLGHGEMVTHCFDKTYRIYSSTFQMGLLHQFND TEIAV ELARGINVS+TEIVRHLFPLIKAGLLRL G DG DLKP+SCDDIPPG+RARLNASFSHKRTRVKINIVDHSRQPLKETKPSTEIIQDRKMSVQAAI RVMK+RKE SHRDLVVQVQEQLRHLFDVD PFVKRNIEDLINKDYLHRLEG++PGKEGYKYVA
Sbjct:  353 LPMHFEAFTFVLTAGCWPLQSVSSSFKPPAPIEDYVVSFLDFYSEVHSGRKLEWLYHLGHGEMVTHCFDKTYRIYSSTFQMGLLHQFNDRTEIAVGELARGINVSDTEIVRHLFPLIKAGLLRLHGADGADLKPTSCDDIPPGARARLNASFSHKRTRVKINIVDHSRQPLKETKPSTEIIQDRKMSVQAAISRVMKIRKEASHRDLVVQVQEQLRHLFDVDPPFVKRNIEDLINKDYLHRLEGKQPGKEGYKYVA 608
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BLAST of mRNA_L-elsbetiae_contig10846.779.1 vs. uniprot
Match: D7FUY8_ECTSI (Similar to Cullin-1 (CUL-1) isoform 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUY8_ECTSI)

HSP 1 Score: 491 bits (1264), Expect = 3.190e-166
Identity = 241/256 (94.14%), Postives = 248/256 (96.88%), Query Frame = 3 
Query:    3 VPMHFEAFTFVLTAGCWPLQSVSSSFKPPAPIEDYVVSFLDFYGEVHSGRKLEWLYHLGHGEMVTHCFDKTYRIYSSTFQMGLLHQFNDTTEIAVSELARGINVSNTEIVRHLFPLIKAGLLRLCGTDGIDLKPSSCDDIPPGSRARLNASFSHKRTRVKINIVDHSRQPLKETKPSTEIIQDRKMSVQAAICRVMKVRKELSHRDLVVQVQEQLRHLFDVDSPFVKRNIEDLINKDYLHRLEGREPGKEGYKYVA 770
            +PMHFEAFTFVLTAGCWPLQSVSSSFKPPAPIEDYVVSFLDFY EVHSGRKLEWLYHLGHGEMVTHCFDKTYRIYSSTFQMGLLHQFND+TEIAVSELARGINVS+TEIVRHLFPLIKAGLLRL G DG DLKP+SCDDIPPG+RARLNASFSHKRTRVKINIVDHSRQPLKE KPSTEIIQDRKMSVQAAI RVMK+RKE SHRDLVVQV+EQLRHLFDVD PFVKRNIEDLINKDYLHRLEGREPGKEGYKYVA
Sbjct:  581 LPMHFEAFTFVLTAGCWPLQSVSSSFKPPAPIEDYVVSFLDFYSEVHSGRKLEWLYHLGHGEMVTHCFDKTYRIYSSTFQMGLLHQFNDSTEIAVSELARGINVSDTEIVRHLFPLIKAGLLRLHGADGADLKPTSCDDIPPGARARLNASFSHKRTRVKINIVDHSRQPLKEAKPSTEIIQDRKMSVQAAISRVMKIRKEASHRDLVVQVREQLRHLFDVDPPFVKRNIEDLINKDYLHRLEGREPGKEGYKYVA 836
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BLAST of mRNA_L-elsbetiae_contig10846.779.1 vs. uniprot
Match: A0A835YSZ1_9STRA (Cullin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSZ1_9STRA)

HSP 1 Score: 316 bits (810), Expect = 2.900e-98
Identity = 159/255 (62.35%), Postives = 195/255 (76.47%), Query Frame = 3 
Query:   15 FEAFTFVLTAGCWPLQSVSSSFKPPAPIEDYVVSFLDFYGEVHSGRKLEWLYHLGHGEMVTHCFDKTYRIYSSTFQMGLLHQFNDTTEIAVSELARGINVSNTEIVRHLFPLIKAGLLRLCGTDGIDLKPS---SCDDIPPGSRARLNASFSHKRTRVKINIVDHSRQPLKETKPSTEIIQDRKMSVQAAICRVMKVRKELSHRDLVVQVQEQLRHLFDVDSPFVKRNIEDLINKDYLHRLEGREPGKEGYKYVA 770
            FEAFTFVLTAGCWPLQSV+S+F+PPAPI  YV  FL+FY EVHS RKLEWLYHLGHGEM   CFDK YR+YSSTFQMG+L+QFN    I VS++A+GI +S TE+ RHL+PLIKAGLL +    G D++ +   SCDDI P     +N +F+ KR+R+KINIVDHSRQP+K   P  E+I DRK SVQAA+CR+MK R+EL+HRDL  +V+ QL HLF  D PF+K+ IE+LI+KDYL R+EG    K+ Y Y A
Sbjct:  610 FEAFTFVLTAGCWPLQSVNSTFQPPAPIHTYVQRFLEFYNEVHSRRKLEWLYHLGHGEMSARCFDKPYRVYSSTFQMGVLYQFNARDAIGVSDIAKGIAISETELSRHLYPLIKAGLLVVRDAAGQDVRGAQMQSCDDIIPQHVIAINTAFTSKRSRIKINIVDHSRQPVKGDVPPVELISDRKASVQAAVCRIMKARRELAHRDLCTEVKAQLVHLFVPDVPFIKKCIEELIDKDYLGRVEG----KDMYTYCA 860
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BLAST of mRNA_L-elsbetiae_contig10846.779.1 vs. uniprot
Match: A0A6V1QSV4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QSV4_HETAK)

HSP 1 Score: 181 bits (458), Expect = 6.730e-48
Identity = 96/257 (37.35%), Postives = 152/257 (59.14%), Query Frame = 3 
Query:    3 VPMHFEAFTFVLTAGCWPLQSVSSSFKPPAPIEDYVVSFLDFYGEVHSGRKLEWLYHLGHGEMVTHCFDKTYRIYSSTFQMGLLHQFNDTTEIAVSELARGINVSNTEIVRHLFPLIKAGLLRLCGTDGIDLKPSSCDDIPPGSRARLNASFSHKRTRVKINIVDHSRQPLKETKPST--EIIQDRKMSVQAAICRVMKVRKELSHRDLVVQVQEQLRHLFDVDSPFVKRNIEDLINKDYLHRLEGREPGKEGYKYV 767
            V    EA++F+LTAGCWP+++ + + + P  +++Y+ +F  FY E ++GR L++L+HLGH E+ T C+   Y + +ST+ M LL +FN +  +++  L   + +   E  R LFP++K  LL + G +     P+  + +      R+N  F  KRTR+K+     +++  ++       E+I DRKM  QAAI R MK R+ + H DL+ +V  Q+  L+  D  FVK+ IEDLI+KDYL R EG   G +GY YV
Sbjct:  614 VAPRLEAYSFILTAGCWPVKAKNLNLQLPVLVQEYIGAFTTFYNETYTGRCLKYLFHLGHAEISTRCYGGRYTLVASTYAMLLLLEFNHSDALSLGALCATLQMEPKETARQLFPMLKLKLLSVQGLEN----PTDHEALKDSDVIRVNPRFHSKRTRIKLPSPPENKKVAQQQNLEIREELIADRKMVTQAAIVRTMKARRAMGHNDLLAEVTRQVAKLYTADVKFVKQQIEDLIDKDYLERREG---GGDGYAYV 863
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BLAST of mRNA_L-elsbetiae_contig10846.779.1 vs. uniprot
Match: UPI000B382AFE (cullin-1 n=1 Tax=Helicoverpa armigera TaxID=29058 RepID=UPI000B382AFE)

HSP 1 Score: 169 bits (429), Expect = 4.660e-44
Identity = 103/255 (40.39%), Postives = 145/255 (56.86%), Query Frame = 3 
Query:    6 PMHFEAFTFVLTAGCWPLQSVSSSFKPPAPIEDYVVSFLDFYGEVHSGRKLEWLYHLGHGEMVTHCFDKTYRIYSSTFQMGLLHQFNDTTEIAVSELARGINVSNTEIVRHLFPLIKAGLLRLCGTDGIDLKPSSCDDIPPGSRARLNASFSHKRTRVKINIVDHSRQPLKETKPSTEIIQDRKMSVQAAICRVMKVRKELSHRDLVVQVQEQLRHLFDVDSPFVKRNIEDLINKDYLHRLEGREPGKEGYKYVA 770
            P+H +    VL++G WP Q  SS F+ P  +E  V  F  FY   HSGRKL WLY++  GE+VT+CF   Y + +STFQM +L Q+ND T   VS+L +   +    +++ L  L+KA LL +C  D  +L  SS  D+  G        + +K+ RV INI   +   +++      I +DRKM +QAAI R+MK RK L H+ LVV+V  QL   F    P +K+ I+ LI K+YL R EG    K+ Y Y+A
Sbjct:  557 PLHIDFSIQVLSSGSWPFQQ-SSCFQLPTELERSVHRFTTFYSSQHSGRKLNWLYNMSKGELVTNCFKNRYTLQASTFQMAVLLQYNDNTSWTVSQLEQHTGIKGDFLIQVLQILLKAKLL-VCQDDESELTESSVVDLYVG--------YKNKKLRVNINIPLKTELKVEQEATHKHIEEDRKMLIQAAIVRIMKTRKTLKHQHLVVEVLNQLSSRFKPRVPVIKKCIDILIEKEYLERTEGE---KDTYSYLA 798
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BLAST of mRNA_L-elsbetiae_contig10846.779.1 vs. uniprot
Match: H9JJH3_BOMMO (CULLIN_2 domain-containing protein n=6 Tax=Obtectomera TaxID=104431 RepID=H9JJH3_BOMMO)

HSP 1 Score: 166 bits (421), Expect = 2.660e-43
Identity = 100/255 (39.22%), Postives = 145/255 (56.86%), Query Frame = 3 
Query:    6 PMHFEAFTFVLTAGCWPLQSVSSSFKPPAPIEDYVVSFLDFYGEVHSGRKLEWLYHLGHGEMVTHCFDKTYRIYSSTFQMGLLHQFNDTTEIAVSELARGINVSNTEIVRHLFPLIKAGLLRLCGTDGIDLKPSSCDDIPPGSRARLNASFSHKRTRVKINIVDHSRQPLKETKPSTEIIQDRKMSVQAAICRVMKVRKELSHRDLVVQVQEQLRHLFDVDSPFVKRNIEDLINKDYLHRLEGREPGKEGYKYVA 770
            P+H +    VL++G WP Q  S+SF+ P  +E  V  F  FY   HSGRKL WLY++  GE++T+CF   Y + +STFQM +L Q+ND T   V +L +   +    +++ L  L+KA LL +C  D  +L  +S  D+  G        + +K+ RV INI   +   +++      I +DRKM +QAAI R+MK RK L H+ LVV+V  QL   F    P +K+ I+ LI K+YL R EG    K+ Y Y+A
Sbjct:  439 PLHIDFSIQVLSSGSWPFQQ-STSFQLPTELERSVHRFTTFYSSQHSGRKLNWLYNMSKGELLTNCFKNRYTLQASTFQMAVLLQYNDNTSWTVRQLEQHTGIKGDFLIQVLQILLKAKLL-VCQEDEAELGENSVVDLYSG--------YKNKKLRVNINIPLKTELKVEQEATHKHIEEDRKMLIQAAIVRIMKTRKTLKHQHLVVEVLNQLSSRFKPRVPVIKKCIDILIEKEYLERTEGE---KDTYSYLA 680
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BLAST of mRNA_L-elsbetiae_contig10846.779.1 vs. uniprot
Match: A0A6J2JI32_BOMMA (cullin-1 n=7 Tax=Obtectomera TaxID=104431 RepID=A0A6J2JI32_BOMMA)

HSP 1 Score: 166 bits (421), Expect = 5.450e-43
Identity = 100/255 (39.22%), Postives = 145/255 (56.86%), Query Frame = 3 
Query:    6 PMHFEAFTFVLTAGCWPLQSVSSSFKPPAPIEDYVVSFLDFYGEVHSGRKLEWLYHLGHGEMVTHCFDKTYRIYSSTFQMGLLHQFNDTTEIAVSELARGINVSNTEIVRHLFPLIKAGLLRLCGTDGIDLKPSSCDDIPPGSRARLNASFSHKRTRVKINIVDHSRQPLKETKPSTEIIQDRKMSVQAAICRVMKVRKELSHRDLVVQVQEQLRHLFDVDSPFVKRNIEDLINKDYLHRLEGREPGKEGYKYVA 770
            P+H +    VL++G WP Q  S+SF+ P  +E  V  F  FY   HSGRKL WLY++  GE++T+CF   Y + +STFQM +L Q+ND T   V +L +   +    +++ L  L+KA LL +C  D  +L  +S  D+  G        + +K+ RV INI   +   +++      I +DRKM +QAAI R+MK RK L H+ LVV+V  QL   F    P +K+ I+ LI K+YL R EG    K+ Y Y+A
Sbjct:  543 PLHIDFSIQVLSSGSWPFQQ-STSFQLPTELERSVHRFTTFYSSQHSGRKLNWLYNMSKGELLTNCFKNRYTLQASTFQMAVLLQYNDNTSWTVRQLEQHTGIKGDFLIQVLQILLKAKLL-VCQEDEAELGENSVVDLYSG--------YKNKKLRVNINIPLKTELKVEQEATHKHIEEDRKMLIQAAIVRIMKTRKTLKHQHLVVEVLNQLSSRFKPRVPVIKKCIDILIEKEYLERTEGE---KDTYSYLA 784
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BLAST of mRNA_L-elsbetiae_contig10846.779.1 vs. uniprot
Match: A0A3N0XV75_ANAGA (Cullin-1 n=1 Tax=Anabarilius grahami TaxID=495550 RepID=A0A3N0XV75_ANAGA)

HSP 1 Score: 160 bits (404), Expect = 9.590e-43
Identity = 97/259 (37.45%), Postives = 141/259 (54.44%), Query Frame = 3 
Query:    6 PMHFEAFTFVLTAGCWPLQSVSSSFKPPAPIEDYVVSFLDFYGEVHSGRKLEWLYHLGHGEMVTHCFDKTYRIYSSTFQMGLLHQFNDTTEIAVSELARGINVSNTEIVRHLFPLIKAGLLRL----CGTDGIDLKPSSCDDIPPGSRARLNASFSHKRTRVKINIVDHSRQPLKETKPSTEIIQDRKMSVQAAICRVMKVRKELSHRDLVVQVQEQLRHLFDVDSPFVKRNIEDLINKDYLHRLEGREPGKEGYKYVA 770
            P+  +    VL++G WP Q  S +F  P+ +E     F  FYG  HSGRKL WLYHL  GE+VT+CF   Y + +STFQM +L QFN      V +LA    +    +V+ L  L+K+ LL L       D +D KP +          +L   + +K+ RV IN+   + Q  ++      I +DRK+ +QAAI R+MK+RK L H+ L+ +V  QL   F    P +K+ I+ LI K+YL R++G    K+ Y Y+A
Sbjct:  144 PLDLDFSIQVLSSGSWPFQQ-SCTFALPSELERSYQRFTAFYGSRHSGRKLTWLYHLSKGELVTNCFKNRYTLQASTFQMAILLQFNTENSYTVQQLADSTQIKTDILVQVLQILLKSKLLVLEDENANIDEMDFKPDTI--------IKLFLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLAEVLNQLSSRFKPRVPVIKKCIDILIEKEYLERVDGE---KDTYSYLA 390
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BLAST of mRNA_L-elsbetiae_contig10846.779.1 vs. uniprot
Match: A0A1I8NGX3_MUSDO (CULLIN_2 domain-containing protein n=8 Tax=Calyptratae TaxID=43742 RepID=A0A1I8NGX3_MUSDO)

HSP 1 Score: 165 bits (418), Expect = 1.360e-42
Identity = 104/262 (39.69%), Postives = 145/262 (55.34%), Query Frame = 3 
Query:    3 VPMHFEAFTFVLTAGCWPLQSVSSSFKPPAPIEDYVVSFLDFYGEVHSGRKLEWLYHLGHGEMVTHCFDKTYRIYSSTFQMGLLHQFNDTTEIAVSELARGINVSNTEIVRHLFPLIKAGLLRLCGTDGIDLKPSSCDDIPPGSRARLNASFSHKRTRVKINIVDHSRQPLK-ETKPSTEII-----QDRKMSVQAAICRVMKVRKELSHRDLVVQVQEQLRHLFDVDSPFVKRNIEDLINKDYLHRLEGREPGKEGYKYVA 770
            +PM  +    VL++G WP    SSSF  P  +E  V  F  FY   HSGRKL WLYH+  GE+VT+CF   Y + +STFQM +L QFND T   + +L     +    +V+ L  L+KA LL  C  D   L P+S           L A + +K+ R+ IN      QPLK E K   E +     +DRK+ +QAAI R+MK+R++L+H  L+ +V  QL   F    P +K+ I+ LI K+YL R+EG+   K+ Y Y+A
Sbjct:  536 IPMEIDFSIEVLSSGSWPFNQ-SSSFSLPTELEKAVQHFNTFYAARHSGRKLNWLYHMCKGELVTNCFRNKYTLQASTFQMAVLLQFNDQTRYTIKQLLDNTQIQLENLVQVLQILLKAKLLT-CADDENSLTPNSV--------VELYADYKNKKLRININ------QPLKTELKVEQEAVHKHIEEDRKLLIQAAIVRIMKMRRKLNHTQLITEVINQLSSRFKPKVPVIKKCIDILIEKEYLERMEGQ---KDTYSYLA 778
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BLAST of mRNA_L-elsbetiae_contig10846.779.1 vs. uniprot
Match: A0A0E3T133_CYDPO (Cullin-1 (Fragment) n=6 Tax=Ditrysia TaxID=37567 RepID=A0A0E3T133_CYDPO)

HSP 1 Score: 164 bits (416), Expect = 2.780e-42
Identity = 101/254 (39.76%), Postives = 145/254 (57.09%), Query Frame = 3 
Query:    9 MHFEAFTFVLTAGCWPLQSVSSSFKPPAPIEDYVVSFLDFYGEVHSGRKLEWLYHLGHGEMVTHCFDKTYRIYSSTFQMGLLHQFNDTTEIAVSELARGINVSNTEIVRHLFPLIKAGLLRLCGTDGIDLKPSSCDDIPPGSRARLNASFSHKRTRVKINIVDHSRQPLKETKPSTEIIQDRKMSVQAAICRVMKVRKELSHRDLVVQVQEQLRHLFDVDSPFVKRNIEDLINKDYLHRLEGREPGKEGYKYVA 770
            +H +    VL++G WP Q  SSSF+ P  +E  V  F  FY   HSGRKL WLY++  GE+VT+CF   Y + +STFQM +L Q+N+ T  +V +L +   +    +V+ L  L+KA LL +C  D  +L  SS  ++  G        + +K+ RV INI   +   +++      I +DRKM +QAAI R+MK RK L H+ LVV+V  QL   F    P +K+ I+ LI K+YL R EG    K+ Y Y+A
Sbjct:  555 LHIDFSIQVLSSGSWPFQQ-SSSFQLPTELERSVSRFTTFYSSQHSGRKLNWLYNMSKGELVTNCFKNRYTLQASTFQMAVLLQYNENTAWSVRQLEQHTGIKGDFLVQVLQILLKAKLL-VCQEDESELTESSIVELYVG--------YKNKKLRVNINIPLKTELKVEQEATHKHIEEDRKMLIQAAIVRIMKTRKTLKHQHLVVEVLNQLSSRFKPRVPVIKKCIDILIEKEYLERTEGE---KDTYSYLA 795
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10846.779.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUU8_9PHAE8.840e-16993.75CULLIN_2 domain-containing protein n=1 Tax=Ectocar... [more]
D7FUY8_ECTSI3.190e-16694.14Similar to Cullin-1 (CUL-1) isoform 1 n=1 Tax=Ecto... [more]
A0A835YSZ1_9STRA2.900e-9862.35Cullin n=1 Tax=Tribonema minus TaxID=303371 RepID=... [more]
A0A6V1QSV4_HETAK6.730e-4837.35Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
UPI000B382AFE4.660e-4440.39cullin-1 n=1 Tax=Helicoverpa armigera TaxID=29058 ... [more]
H9JJH3_BOMMO2.660e-4339.22CULLIN_2 domain-containing protein n=6 Tax=Obtecto... [more]
A0A6J2JI32_BOMMA5.450e-4339.22cullin-1 n=7 Tax=Obtectomera TaxID=104431 RepID=A0... [more]
A0A3N0XV75_ANAGA9.590e-4337.45Cullin-1 n=1 Tax=Anabarilius grahami TaxID=495550 ... [more]
A0A1I8NGX3_MUSDO1.360e-4239.69CULLIN_2 domain-containing protein n=8 Tax=Calyptr... [more]
A0A0E3T133_CYDPO2.780e-4239.76Cullin-1 (Fragment) n=6 Tax=Ditrysia TaxID=37567 R... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10846contigL-elsbetiae_contig10846:337..3425 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score493.0
Seed ortholog evalue8.2e-137
Seed eggNOG ortholog2880.D7FUY8
Preferred nameCUL1
KEGG koko:K03347
KEGG Pathwayko04110,ko04111,ko04114,ko04120,ko04141,ko04310,ko04340,ko04341,ko04350,ko04710,ko05168,ko05200,map04110,map04111,map04114,map04120,map04141,map04310,map04340,map04341,map04350,map04710,map05168,map05200
KEGG ModuleM00379,M00380,M00381,M00382,M00387,M00407,M00411
Hectar predicted targeting categorysignal peptide
GOsGO:0000003,GO:0000082,GO:0000086,GO:0000151,GO:0000152,GO:0000165,GO:0000209,GO:0000278,GO:0002119,GO:0002164,GO:0002252,GO:0002376,GO:0003674,GO:0003676,GO:0003677,GO:0003688,GO:0003690,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006275,GO:0006464,GO:0006468,GO:0006508,GO:0006511,GO:0006513,GO:0006793,GO:0006796,GO:0006807,GO:0006873,GO:0006875,GO:0006879,GO:0006915,GO:0006935,GO:0006950,GO:0006952,GO:0007049,GO:0007050,GO:0007154,GO:0007165,GO:0007166,GO:0007267,GO:0007275,GO:0007346,GO:0007399,GO:0007568,GO:0008150,GO:0008152,GO:0008156,GO:0008219,GO:0008283,GO:0008285,GO:0008340,GO:0008361,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009615,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009887,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009968,GO:0009987,GO:0009991,GO:0010033,GO:0010259,GO:0010265,GO:0010389,GO:0010498,GO:0010556,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010639,GO:0010646,GO:0010648,GO:0010720,GO:0010824,GO:0010826,GO:0010941,GO:0010942,GO:0010948,GO:0010972,GO:0012501,GO:0014041,GO:0014042,GO:0014066,GO:0014067,GO:0016043,GO:0016055,GO:0016310,GO:0016567,GO:0016740,GO:0019005,GO:0019219,GO:0019221,GO:0019222,GO:0019538,GO:0019725,GO:0019787,GO:0019899,GO:0019941,GO:0022008,GO:0022402,GO:0022607,GO:0023014,GO:0023051,GO:0023052,GO:0023057,GO:0030003,GO:0030111,GO:0030154,GO:0030162,GO:0030163,GO:0030174,GO:0030178,GO:0030587,GO:0030674,GO:0031098,GO:0031146,GO:0031156,GO:0031285,GO:0031286,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031329,GO:0031331,GO:0031461,GO:0031625,GO:0031647,GO:0031667,GO:0031974,GO:0031981,GO:0032006,GO:0032007,GO:0032101,GO:0032102,GO:0032104,GO:0032105,GO:0032107,GO:0032108,GO:0032268,GO:0032270,GO:0032297,GO:0032434,GO:0032436,GO:0032446,GO:0032501,GO:0032502,GO:0032535,GO:0032886,GO:0032991,GO:0033043,GO:0033262,GO:0033554,GO:0034097,GO:0035556,GO:0036211,GO:0038061,GO:0040011,GO:0042127,GO:0042176,GO:0042221,GO:0042330,GO:0042592,GO:0042594,GO:0042981,GO:0043065,GO:0043066,GO:0043067,GO:0043068,GO:0043069,GO:0043161,GO:0043170,GO:0043207,GO:0043224,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043516,GO:0043518,GO:0043565,GO:0043632,GO:0043687,GO:0043900,GO:0043901,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044770,GO:0044772,GO:0044839,GO:0044843,GO:0045595,GO:0045596,GO:0045597,GO:0045664,GO:0045666,GO:0045732,GO:0045786,GO:0045862,GO:0045930,GO:0045934,GO:0046605,GO:0046606,GO:0046626,GO:0046627,GO:0046916,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0048878,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0050801,GO:0050896,GO:0051052,GO:0051053,GO:0051093,GO:0051094,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051173,GO:0051239,GO:0051240,GO:0051241,GO:0051246,GO:0051247,GO:0051403,GO:0051493,GO:0051494,GO:0051603,GO:0051607,GO:0051703,GO:0051704,GO:0051707,GO:0051716,GO:0051726,GO:0051960,GO:0051962,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0060090,GO:0060255,GO:0060284,GO:0060548,GO:0060828,GO:0061136,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070498,GO:0070507,GO:0070555,GO:0070647,GO:0070887,GO:0071310,GO:0071345,GO:0071347,GO:0071704,GO:0071840,GO:0075260,GO:0075262,GO:0080090,GO:0080134,GO:0080135,GO:0090066,GO:0090090,GO:0090329,GO:0090702,GO:0097159,GO:0097190,GO:0097193,GO:0098542,GO:0098771,GO:0099120,GO:0140096,GO:0198738,GO:1900076,GO:1900077,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901796,GO:1901797,GO:1901800,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902494,GO:1902531,GO:1902532,GO:1902576,GO:1902749,GO:1902750,GO:1903047,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1903429,GO:1903431,GO:1903463,GO:1903464,GO:1903466,GO:1903467,GO:1904799,GO:1904801,GO:1905114,GO:1990234,GO:1990452,GO:1990837,GO:2000026,GO:2000058,GO:2000060,GO:2000104,GO:2000112,GO:2000113,GO:2000241,GO:2000242,GO:2001020,GO:2001021
EggNOG free text desc.ubiquitin protein ligase binding
EggNOG OGsCOG5647@1,KOG2166@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04121
Ec32 ortholog descriptionCullin repeat-like-containing domain
Ec32 orthologEc-01_008690.1
Exons6
Model size884
Cds size765
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10846.779.1prot_L-elsbetiae_contig10846.779.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10846 345..3314 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815302.6230729-UTR-L-elsbetiae_contig10846:336..3441622815302.6230729-UTR-L-elsbetiae_contig10846:336..344Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10846 337..344 +
1691682826.4577737-UTR-L-elsbetiae_contig10846:336..3441691682826.4577737-UTR-L-elsbetiae_contig10846:336..344Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10846 337..344 +
1622815302.703988-UTR-L-elsbetiae_contig10846:3314..34251622815302.703988-UTR-L-elsbetiae_contig10846:3314..3425Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10846 3315..3425 +
1691682826.5275905-UTR-L-elsbetiae_contig10846:3314..34251691682826.5275905-UTR-L-elsbetiae_contig10846:3314..3425Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10846 3315..3425 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815302.6328645-CDS-L-elsbetiae_contig10846:344..4731622815302.6328645-CDS-L-elsbetiae_contig10846:344..473Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10846 345..473 +
1691682826.4719384-CDS-L-elsbetiae_contig10846:344..4731691682826.4719384-CDS-L-elsbetiae_contig10846:344..473Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10846 345..473 +
1622815302.6420684-CDS-L-elsbetiae_contig10846:699..8221622815302.6420684-CDS-L-elsbetiae_contig10846:699..822Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10846 700..822 +
1691682826.4809976-CDS-L-elsbetiae_contig10846:699..8221691682826.4809976-CDS-L-elsbetiae_contig10846:699..822Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10846 700..822 +
1622815302.6579344-CDS-L-elsbetiae_contig10846:1184..12741622815302.6579344-CDS-L-elsbetiae_contig10846:1184..1274Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10846 1185..1274 +
1691682826.4897199-CDS-L-elsbetiae_contig10846:1184..12741691682826.4897199-CDS-L-elsbetiae_contig10846:1184..1274Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10846 1185..1274 +
1622815302.6733055-CDS-L-elsbetiae_contig10846:1658..18561622815302.6733055-CDS-L-elsbetiae_contig10846:1658..1856Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10846 1659..1856 +
1691682826.5035577-CDS-L-elsbetiae_contig10846:1658..18561691682826.5035577-CDS-L-elsbetiae_contig10846:1658..1856Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10846 1659..1856 +
1622815302.685068-CDS-L-elsbetiae_contig10846:2682..27661622815302.685068-CDS-L-elsbetiae_contig10846:2682..2766Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10846 2683..2766 +
1691682826.510914-CDS-L-elsbetiae_contig10846:2682..27661691682826.510914-CDS-L-elsbetiae_contig10846:2682..2766Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10846 2683..2766 +
1622815302.694246-CDS-L-elsbetiae_contig10846:3173..33141622815302.694246-CDS-L-elsbetiae_contig10846:3173..3314Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10846 3174..3314 +
1691682826.518879-CDS-L-elsbetiae_contig10846:3173..33141691682826.518879-CDS-L-elsbetiae_contig10846:3173..3314Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10846 3174..3314 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10846.779.1

>prot_L-elsbetiae_contig10846.779.1 ID=prot_L-elsbetiae_contig10846.779.1|Name=mRNA_L-elsbetiae_contig10846.779.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=255bp
MHFEAFTFVLTAGCWPLQSVSSSFKPPAPIEDYVVSFLDFYGEVHSGRKL
EWLYHLGHGEMVTHCFDKTYRIYSSTFQMGLLHQFNDTTEIAVSELARGI
NVSNTEIVRHLFPLIKAGLLRLCGTDGIDLKPSSCDDIPPGSRARLNASF
SHKRTRVKINIVDHSRQPLKETKPSTEIIQDRKMSVQAAICRVMKVRKEL
SHRDLVVQVQEQLRHLFDVDSPFVKRNIEDLINKDYLHRLEGREPGKEGY
KYVA*
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mRNA from alignment at L-elsbetiae_contig10846:337..3425+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10846.779.1 ID=mRNA_L-elsbetiae_contig10846.779.1|Name=mRNA_L-elsbetiae_contig10846.779.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3089bp|location=Sequence derived from alignment at L-elsbetiae_contig10846:337..3425+ (Laminarionema elsbetiae ELsaHSoW15)
AGGTGCCGATGCACTTCGAGGCCTTCACGTTCGTGCTCACGGCGGGCTGC
TGGCCCCTGCAGTCCGTATCTTCCTCCTTCAAGCCTCCGGCCCCTATCGA
GGACTACGTAGTTAGCTTTCTAGACTTCTACGGCGAGGTATGTATTTCCC
CTGTTCTTCTCGTACTCCTGTTGTCTGCTGCTTCCTCGCTATGTGGCCGC
TGCTGTGACTGCCGTCTACTACCCCACAGGGGCTTTGCTACTGTCTCATT
CGAGCACGATTCCTTGCGGACCTATCTCTCTGTGCCCCTACATCTCTCTC
TCTCTCCCCCTCTCTCCCTCTCTCCCTCTCTCTAATTGCCCCGCATTTCT
TTCTCGACCGAAGGTTCATTCCGGGCGAAAGTTGGAGTGGTTGTATCACC
TCGGGCACGGGGAGATGGTGACGCACTGCTTTGACAAGACGTACCGGATA
TACTCCTCCACGTTCCAGATGGGCCTTTTGCATCAGGTAAATACATCAGG
TGCAACTGCTTCGAAGGACACCTATGTATATTCAAAGTACCAGTTTCTGA
AAGCATGGGTTTGGGCTTCTGATGCTGACGACACGATACAAAGTAGAACG
GAGATATATCGGCCTCTCGACCGCTGCTGCTTATCGAAAGTGAAACGAAC
AGCACCTTGATCGTAGGCAGTAAGTAGACTGCCTGAAATTTATTTCTCTG
TCTCCCTTCCTCTCTGCCACTCTCTCGATGTCTCGGTCGCGATTTATGTT
CATACATGTTGGCGTCTTTCTCTGGTTAGCTCACCTCATCGCCTTCTATT
TGTCCCTGCTCTCTCTCTCCCCTATTCTCCTCTTCATTTTTCTGGAAGTT
CAACGACACGACCGAGATAGCCGTGAGCGAGCTCGCTCGCGGGATCAACG
TCTCCAATACAGAAATCGTCCGGCATCTCTTTCCTTTGGTACGTACGCGT
TTGGCGTAGGCTACCCCTGGTTGGACAGACGTCGCTGTTGCGCGATTAAT
CCCATCGCTACTATGGTCGCTTCGTTCGGTACAGCGAGTTGTAGTTTGTC
TTAGGTGGTTACCTTGGTCTTCATGTTCTGTGTGCTCAAGAGTCTTAAGG
TACGAGGTCCATATGTCGGCTATCATTTGTGGGTTTTGCTACCAAATACC
TGGCGGTGTGTAGCACAGCAGCAGACGATGAGCGCTTGTCCATCGCTGTC
GACCGTTTGTCCCCCCCTTGATTTCGTTACACTTTTACCACTTTCCCTCC
CTCCCCACTTCTTCCCCCCCCTCCTTTCGCTCTCCCCGGACGAAAATCGT
GCGACGGTCGAGGATATCGCAGATTAAGGCCGGGCTTCTCCGTCTTTGCG
GAACGGACGGTATCGACCTGAAGCCCTCGTCGTGCGACGATATCCCGCCG
GGCTCTAGGGCAAGGCTGAACGCTTCGTTCAGTCACAAGCGCACGCGTGT
GAAGATTAACATCGTGGATCACTCCCGCCAGCCACTCAAGGAGACCAAGC
CATCCACGGAGATCATCCAGGTTGGCTTTTGCTTACTTGTGTTTTGTTTT
CGCGGCGGTGTTTGTTGAGACTTTTTGTCTGTCTGTCTGTCTGTCTATCA
GGTGCTTGTTACGATGCGCTTGGTTTGGAACTGTCCACGCCACGGCTGAT
GTTTGCATATAAACAGAAATGTCAGCCAGCAGTTTCTGTCCAAACCCTGA
AAATCGTTATTTTCAAGAAGGTGTAATTTCCTGCGGTTGCCGCCAGCTAC
AGGTAGAAATCTAGGTTGTAGGATTTCCCCGATCCATTAGCTGGCTTTGC
GCCTGGTTGTCACATGTTTTTTTTATTCTAGGGTTAGCGGCGTGAGTGCC
TTATGTGGGCAATATACCTAAACGTTGTTCGATGCGCGGCAAAGTGTTGA
GTGTGAGAGAGAAAGAGAAGGTGTACTTCTACCTCAAGAATATATATATA
TTTTTTCACCTCACATAGCGTGTAGAGGGGAGCGGAGGGCTCCAGACTAT
CTGTATCTGATCTTTTGTTTTTGTGCTTTGTGGACCCTTCGGGTCCATTT
TATTTCTTTTCATTTTTCGGTTACCCTTTTTTAGGGTAAGTTATCCTGTG
ACCACGGGAATCGACCGCGTCAGTGTTGGACTAGTACGGACTCATGGAGG
TGTACTGGATAGAGAGATCGGAACGGTTTTTAATGCAAAGACAACACAGC
AACACACACAACACCCAGAGAACAACCCGCCCTCCCACGCATGTCGCAAG
CACGCGCCGTCATGACCCGTTGACGTTCGAACCCCAGCTTTGTTCCTGTA
CATACCCATGGTCGTTGCGATTTTGTTTTTCGGCCGTAAATTTCAGGACC
GCAAAATGTCCGTCCAGGCGGCCATCTGCAGGGTCATGAAGGTCCGCAAG
GAGTTAAGCCACCGCGATCTCGTCGTGCAGGTGAAGAAAAGAAGAAAAAC
GACGAAAATAAGCAGGAGCTAGCGGTCCTCGCGTGTTTCACGTGAATCCC
ACTTCTATGCGTAGCCGGCCGTAGCGTAGCCTATGTATGCGTATTCGTTT
TGGTTGTCTTCTTCTCCTGCTGGCCGATTGCGTGTGTAGGCTGCTGTCAG
GCCGGGTCGTTGCGTCAACATCTTTTGTTGCTTCCGTCCCCGTTAGGCAT
GCGATGAGCCCTCTCCCCCAAAAACACACCCCAAATGGTACAGACAGGCT
CCCTTGCATCCTGGGTTCTTTAATGTGGAGAGGTTCACAGTAAGCGTGCC
CGGCCCTCCCCGAAACAGAAGACCTATGTTGAAAACCTCGCCGCCCCCCC
CCGATTGTCGCGGCTCAACGTGGCGTCACCTAAACAGGTCCAAGAACAGC
TGAGGCATCTGTTCGACGTCGACTCGCCCTTCGTGAAGCGTAATATCGAG
GACCTCATCAACAAGGATTATCTGCACCGTCTCGAGGGGAGAGAGCCCGG
AAAAGAGGGCTACAAGTATGTCGCCTAGATTCAGTGAACTGCTGGGTGAT
TGTGTGGATTCGGGTGAGACGAGACGAGACGAGGCGCGGCGCGGCGCGGC
GCGGCGCGGCAGCGGGAGAGTAAAATGGGGAGCCGCACC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10846:337..3425+

>mRNA_L-elsbetiae_contig10846.779.1 ID=mRNA_L-elsbetiae_contig10846.779.1|Name=mRNA_L-elsbetiae_contig10846.779.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1530bp|location=Sequence derived from alignment at L-elsbetiae_contig10846:337..3425+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCACTTCGAGGCCTTCACGTTCGTGCTCACGGCGGGCTGCTGGCCCCT
GCAGTCCGTATCTTCCTCCTTCAAGCCTCCGGCCCCTATCGAGGACTACG
TAGTTAGCTTTCTAGACTTCTACGGCGAGATGCACTTCGAGGCCTTCACG
TTCGTGCTCACGGCGGGCTGCTGGCCCCTGCAGTCCGTATCTTCCTCCTT
CAAGCCTCCGGCCCCTATCGAGGACTACGTAGTTAGCTTTCTAGACTTCT
ACGGCGAGGTTCATTCCGGGCGAAAGTTGGAGTGGTTGTATCACCTCGGG
CACGGGGAGATGGTGACGCACTGCTTTGACAAGACGTACCGGATATACTC
CTCCACGTTCCAGATGGGCCTTTTGCATCAGGTTCATTCCGGGCGAAAGT
TGGAGTGGTTGTATCACCTCGGGCACGGGGAGATGGTGACGCACTGCTTT
GACAAGACGTACCGGATATACTCCTCCACGTTCCAGATGGGCCTTTTGCA
TCAGTTCAACGACACGACCGAGATAGCCGTGAGCGAGCTCGCTCGCGGGA
TCAACGTCTCCAATACAGAAATCGTCCGGCATCTCTTTCCTTTGTTCAAC
GACACGACCGAGATAGCCGTGAGCGAGCTCGCTCGCGGGATCAACGTCTC
CAATACAGAAATCGTCCGGCATCTCTTTCCTTTGATTAAGGCCGGGCTTC
TCCGTCTTTGCGGAACGGACGGTATCGACCTGAAGCCCTCGTCGTGCGAC
GATATCCCGCCGGGCTCTAGGGCAAGGCTGAACGCTTCGTTCAGTCACAA
GCGCACGCGTGTGAAGATTAACATCGTGGATCACTCCCGCCAGCCACTCA
AGGAGACCAAGCCATCCACGGAGATCATCCAGATTAAGGCCGGGCTTCTC
CGTCTTTGCGGAACGGACGGTATCGACCTGAAGCCCTCGTCGTGCGACGA
TATCCCGCCGGGCTCTAGGGCAAGGCTGAACGCTTCGTTCAGTCACAAGC
GCACGCGTGTGAAGATTAACATCGTGGATCACTCCCGCCAGCCACTCAAG
GAGACCAAGCCATCCACGGAGATCATCCAGGACCGCAAAATGTCCGTCCA
GGCGGCCATCTGCAGGGTCATGAAGGTCCGCAAGGAGTTAAGCCACCGCG
ATCTCGTCGTGCAGGACCGCAAAATGTCCGTCCAGGCGGCCATCTGCAGG
GTCATGAAGGTCCGCAAGGAGTTAAGCCACCGCGATCTCGTCGTGCAGGT
CCAAGAACAGCTGAGGCATCTGTTCGACGTCGACTCGCCCTTCGTGAAGC
GTAATATCGAGGACCTCATCAACAAGGATTATCTGCACCGTCTCGAGGGG
AGAGAGCCCGGAAAAGAGGGCTACAAGTATGTCGCCTAGGTCCAAGAACA
GCTGAGGCATCTGTTCGACGTCGACTCGCCCTTCGTGAAGCGTAATATCG
AGGACCTCATCAACAAGGATTATCTGCACCGTCTCGAGGGGAGAGAGCCC
GGAAAAGAGGGCTACAAGTATGTCGCCTAG
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