mRNA_L-elsbetiae_contig10829.772.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10829.772.1
Unique NamemRNA_L-elsbetiae_contig10829.772.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10829.772.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10829contigL-elsbetiae_contig10829:5546..6629 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-26_002570.2
Exons2
Model size348
Cds size348
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815301.8983102-CDS-L-elsbetiae_contig10829:5545..58331622815301.8983102-CDS-L-elsbetiae_contig10829:5545..5833Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10829 5546..5833 -
1691682826.0729299-CDS-L-elsbetiae_contig10829:5545..58331691682826.0729299-CDS-L-elsbetiae_contig10829:5545..5833Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10829 5546..5833 -
1622815301.911579-CDS-L-elsbetiae_contig10829:6569..66291622815301.911579-CDS-L-elsbetiae_contig10829:6569..6629Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10829 6570..6629 -
1691682826.0877383-CDS-L-elsbetiae_contig10829:6569..66291691682826.0877383-CDS-L-elsbetiae_contig10829:6569..6629Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10829 6570..6629 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10829.772.1prot_L-elsbetiae_contig10829.772.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10829 5546..6629 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10829.772.1

>prot_L-elsbetiae_contig10829.772.1 ID=prot_L-elsbetiae_contig10829.772.1|Name=mRNA_L-elsbetiae_contig10829.772.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=116bp
LDKVPGTDKAKYALKALEKDIGKKCITCAEADSTIKAGDFLLSTADVGTA
LHYTCARKKRRDYIRVVYEAQDKRHAEYIAKDAGNSAEKKAKLEEANAAV
SFSELAPDSDDEIEL*
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mRNA from alignment at L-elsbetiae_contig10829:5546..6629-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10829.772.1 ID=mRNA_L-elsbetiae_contig10829.772.1|Name=mRNA_L-elsbetiae_contig10829.772.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1084bp|location=Sequence derived from alignment at L-elsbetiae_contig10829:5546..6629- (Laminarionema elsbetiae ELsaHSoW15)
CTGGACAAGGTGCCCGGAACCGACAAGGCCAAGTACGCCCTGAAGGCGCT
TGAAAAGGACGTGAGTTATAAGTACTCTTCCGCAATCGTGTAGTACTCTT
TTCCCGCAATCGTGTAGATTGGTCTACGCTACGTCGTGCAAGCTGTTTTT
TTTCAGCGATGGTTTGCCTTTTTTCTCTAAAACAGAGTATATATTTTTTT
TTGTTTCATCGGCATTTTGTCTTTTTTCTCTAGAACCGGGTAGAACAGAC
TTCAACCTGTACGTTCGTCTCACCCGTTGGTAGCGGGTTCGACATTCCCT
GATAGGGTCTTTTTTTGTGTCTTTTTTTGTGTCCTTTTTTTTTGTTCCTT
TAATTGTTGTCCTTTTTTCTGTGCATTTATTGCCCTTTTGTTTGTCCTAT
TTTTGTTCCTTTTGTTGTCCTTTTTTCTGTGCATTTGTTGCCCTCTTCTC
CCAGCAATTTGCCGTTTGTTCTTTTTTTTTGTATCCTTTTTTTTTGTTCC
TTTTGTTGTCCTTTTTTCTGTGCGTTTGTTGTCCTTTTGTTTGTCCTATT
TTTTTGTCCTTTTGTTTTCAATTTGATTGTTTTGATTCTTTCCTGTGCGC
CTCATTCCTGTAATTTGTTTGCTTTTGTTATATTCTTCCTGTACCCTCCC
GGCGCGTTATGTTTATTTCTTCCTGTGAACATATTTACTCCATGGCTCGC
TTTTTCTGGACTACAAGAACAAACTCGTCGTCGTTAATAATCTCAGCCCT
GTCTTTTTCTGTCCCCCCGCGATTCATGTGTTGTTTCCAAAAACAGATCG
GCAAGAAGTGCATCACCTGTGCCGAAGCCGACTCGACCATCAAGGCCGGT
GACTTCCTCCTGTCCACCGCCGACGTCGGCACGGCCCTGCACTACACGTG
CGCCCGCAAGAAGAGGAGGGACTACATCCGCGTCGTCTACGAGGCCCAGG
ACAAGCGCCACGCCGAGTACATTGCCAAGGACGCCGGCAACTCGGCCGAG
AAGAAGGCCAAGCTCGAGGAGGCCAACGCGGCTGTTTCCTTTTCTGAGCT
TGCCCCGGACTCCGACGACGAGATCGAGCTCTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10829:5546..6629-

>mRNA_L-elsbetiae_contig10829.772.1 ID=mRNA_L-elsbetiae_contig10829.772.1|Name=mRNA_L-elsbetiae_contig10829.772.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=696bp|location=Sequence derived from alignment at L-elsbetiae_contig10829:5546..6629- (Laminarionema elsbetiae ELsaHSoW15)
CTGGACAAGGTGCCCGGAACCGACAAGGCCAAGTACGCCCTGAAGGCGCT
TGAAAAGGACCTGGACAAGGTGCCCGGAACCGACAAGGCCAAGTACGCCC
TGAAGGCGCTTGAAAAGGACATCGGCAAGAAGTGCATCACCTGTGCCGAA
GCCGACTCGACCATCAAGGCCGGTGACTTCCTCCTGTCCACCGCCGACGT
CGGCACGGCCCTGCACTACACGTGCGCCCGCAAGAAGAGGAGGGACTACA
TCCGCGTCGTCTACGAGGCCCAGGACAAGCGCCACGCCGAGTACATTGCC
AAGGACGCCGGCAACTCGGCCGAGAAGAAGGCCAAGCTCGAGGAGGCCAA
CGCGGCTGTTTCCTTTTCTGAGCTTGCCCCGGACTCCGACGACGAGATCG
AGCTCTGAATCGGCAAGAAGTGCATCACCTGTGCCGAAGCCGACTCGACC
ATCAAGGCCGGTGACTTCCTCCTGTCCACCGCCGACGTCGGCACGGCCCT
GCACTACACGTGCGCCCGCAAGAAGAGGAGGGACTACATCCGCGTCGTCT
ACGAGGCCCAGGACAAGCGCCACGCCGAGTACATTGCCAAGGACGCCGGC
AACTCGGCCGAGAAGAAGGCCAAGCTCGAGGAGGCCAACGCGGCTGTTTC
CTTTTCTGAGCTTGCCCCGGACTCCGACGACGAGATCGAGCTCTGA
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