mRNA_L-elsbetiae_contig1082.764.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1082.764.1
Unique NamemRNA_L-elsbetiae_contig1082.764.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1082.764.1 vs. uniprot
Match: A0A6H5K1C9_9PHAE (Ribosomal_L18A domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K1C9_9PHAE)

HSP 1 Score: 349 bits (896), Expect = 9.830e-118
Identity = 168/177 (94.92%), Postives = 174/177 (98.31%), Query Frame = 3 
Query:    3 MVAMRQYQVVGRKAVTEKEPNPSVYRMKVFAPNEVTGASQFWYLMHQMRKMKKTTGEILDIVELTEKNARIVKNYGIWLRYDSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRPRSIQIIRTGIVAAKDTKRPDIQQFHNANIKFPLTHRLPRAPKKKFRTTFKASRPTTFLG 533
            MV MRQYQVVGRKAVTEKEPNP VYRMKVFAPNEVTGASQFWYLMHQMRKMKKTTGEILDIVELTEKN+RI+KNYGIWLRYDSRSGTHNMYREYRDLTLTGAVDQMYS+MAGRHRCRPRSIQIIRTGIVAAKDTKRPD++QFH+A IKFPLTHRLPRAPKKKFRTTFKASRPTTFLG
Sbjct:   29 MVVMRQYQVVGRKAVTEKEPNPPVYRMKVFAPNEVTGASQFWYLMHQMRKMKKTTGEILDIVELTEKNSRIIKNYGIWLRYDSRSGTHNMYREYRDLTLTGAVDQMYSQMAGRHRCRPRSIQIIRTGIVAAKDTKRPDVKQFHSAKIKFPLTHRLPRAPKKKFRTTFKASRPTTFLG 205
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BLAST of mRNA_L-elsbetiae_contig1082.764.1 vs. uniprot
Match: A0A835YZJ5_9STRA (Ribosomal protein L18 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZJ5_9STRA)

HSP 1 Score: 295 bits (755), Expect = 2.560e-96
Identity = 141/177 (79.66%), Postives = 152/177 (85.88%), Query Frame = 3 
Query:    3 MVAMRQYQVVGRKAVTEKEPNPSVYRMKVFAPNEVTGASQFWYLMHQMRKMKKTTGEILDIVELTEKNARIVKNYGIWLRYDSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRPRSIQIIRTGIVAAKDTKRPDIQQFHNANIKFPLTHRLPRAPKKKFRTTFKASRPTTFLG 533
            M  MRQYQVVGRKA TE +PNP  YRMKVFA  +V   S FWYL+HQMRKMKKTTGEILD+ E+ EKNARI+K+YGIWLRYDSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRPRSIQIIRTGIVAAKDTKR  ++QF N+ IKFPL HR+PR P KKFRT FKA RP TF G
Sbjct:   32 MPPMRQYQVVGRKAPTEADPNPPAYRMKVFAATKVGAISSFWYLIHQMRKMKKTTGEILDVNEIVEKNARIIKHYGIWLRYDSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRPRSIQIIRTGIVAAKDTKRAPVKQFQNSQIKFPLAHRIPREPSKKFRTVFKAQRPNTFFG 208
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BLAST of mRNA_L-elsbetiae_contig1082.764.1 vs. uniprot
Match: A0A8D0YIJ2_PIG (60S ribosomal protein L18a n=1 Tax=Sus scrofa TaxID=9823 RepID=A0A8D0YIJ2_PIG)

HSP 1 Score: 292 bits (748), Expect = 3.980e-96
Identity = 139/149 (93.29%), Postives = 146/149 (97.99%), Query Frame = 3 
Query:    3 MVAMRQYQVVGRKAVTEKEPNPSVYRMKVFAPNEVTGASQFWYLMHQMRKMKKTTGEILDIVELTEKNARIVKNYGIWLRYDSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRPRSIQIIRTGIVAAKDTKRPDIQQFHNANIKF 449
            MVAMRQYQVVGRKA T+KEPNP+VYRMKVFAPNEVTGASQFWYLMHQMRKMKKTTGEILDI+E+TEKNARI+KNYGIWLRYDSRSGTHNMYREYRDL+LTGAVDQMYSEMAGRHRCRPRSIQIIRTGIVAAKDTKRPD+QQFHNA I F
Sbjct:    1 MVAMRQYQVVGRKAPTDKEPNPAVYRMKVFAPNEVTGASQFWYLMHQMRKMKKTTGEILDIIEITEKNARIIKNYGIWLRYDSRSGTHNMYREYRDLSLTGAVDQMYSEMAGRHRCRPRSIQIIRTGIVAAKDTKRPDVQQFHNAKINF 149
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BLAST of mRNA_L-elsbetiae_contig1082.764.1 vs. uniprot
Match: K3WCT5_GLOUD (60S ribosomal protein L18a n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WCT5_GLOUD)

HSP 1 Score: 271 bits (694), Expect = 1.440e-87
Identity = 128/174 (73.56%), Postives = 150/174 (86.21%), Query Frame = 3 
Query:   12 MRQYQVVGRKAVTEKEPNPSVYRMKVFAPNEVTGASQFWYLMHQMRKMKKTTGEILDIVELTEKNARIVKNYGIWLRYDSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRPRSIQIIRTGIVAAKDTKRPDIQQFHNANIKFPLTHRLPRAPKKKFRTTFKASRPTTFLG 533
            +RQ+QVVGRKA TEKEPNP  YRMK+FAPNEV   S+FWY +HQM+KMKKTTGEILD+ ELTEKN RIV NYGIW+RY+SRSGTHNMY+EYRD+TL  AV+QMYSE+AGRHR RPRSIQI+RT IVAAKDTK+ ++QQFH++ IKFPL+HR+ R   K  RT FKA+RPTTF G
Sbjct:    3 IRQFQVVGRKAPTEKEPNPPAYRMKLFAPNEVLAKSRFWYFLHQMKKMKKTTGEILDVNELTEKNKRIVNNYGIWIRYNSRSGTHNMYKEYRDVTLCKAVEQMYSELAGRHRARPRSIQIMRTAIVAAKDTKKLNVQQFHDSKIKFPLSHRIARPSTKNQRTVFKANRPTTFRG 176
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BLAST of mRNA_L-elsbetiae_contig1082.764.1 vs. uniprot
Match: A0A8K1FN02_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FN02_PYTOL)

HSP 1 Score: 271 bits (693), Expect = 2.040e-87
Identity = 126/174 (72.41%), Postives = 150/174 (86.21%), Query Frame = 3 
Query:   12 MRQYQVVGRKAVTEKEPNPSVYRMKVFAPNEVTGASQFWYLMHQMRKMKKTTGEILDIVELTEKNARIVKNYGIWLRYDSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRPRSIQIIRTGIVAAKDTKRPDIQQFHNANIKFPLTHRLPRAPKKKFRTTFKASRPTTFLG 533
            +RQ+QVVGRKA T+KEPNP  YRMK+FA NEV   S+FWY +HQM+KMKKTTGEILDI E+TEKN R+V NYGIW+RY+SRSGTHNMY+EYRD+TL  AV+Q+Y+E+AGRHR RPRSIQI+RT IVAAKDTK+ ++QQFH+ANIKFPL+HR+PR   K  RT FKASRP TF G
Sbjct:    3 IRQFQVVGRKAPTDKEPNPPAYRMKIFAANEVLAKSRFWYFLHQMKKMKKTTGEILDINEITEKNNRVVNNYGIWIRYNSRSGTHNMYKEYRDVTLCSAVEQLYAELAGRHRARPRSIQIMRTAIVAAKDTKKGNVQQFHDANIKFPLSHRIPRPSIKNHRTVFKASRPCTFRG 176
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BLAST of mRNA_L-elsbetiae_contig1082.764.1 vs. uniprot
Match: A0A5D6XXS3_9STRA (Ribosomal_L18A domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XXS3_9STRA)

HSP 1 Score: 272 bits (695), Expect = 7.510e-87
Identity = 129/177 (72.88%), Postives = 151/177 (85.31%), Query Frame = 3 
Query:    3 MVAMRQYQVVGRKAVTEKEPNPSVYRMKVFAPNEVTGASQFWYLMHQMRKMKKTTGEILDIVELTEKNARIVKNYGIWLRYDSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRPRSIQIIRTGIVAAKDTKRPDIQQFHNANIKFPLTHRLPRAPKKKFRTTFKASRPTTFLG 533
            M  +RQ+QVVGRKA TEKEPNP  YRMK+FAPNEV   S+FWY +HQM+KMKKTTGEILDI ELTEKN RIVKNYGIW+RY+SRSGTHNMY+EYRD+TL  AV+Q+Y+E+AGRHR RPRSIQI+RT IVAAKDTK+ ++QQFH++ IKFPL  R+PR   K  RT FKA+RPTTF G
Sbjct:   59 MNLIRQFQVVGRKAPTEKEPNPPAYRMKLFAPNEVLAKSRFWYFLHQMKKMKKTTGEILDINELTEKNKRIVKNYGIWIRYNSRSGTHNMYKEYRDVTLCSAVEQLYAELAGRHRARPRSIQIMRTAIVAAKDTKKLNVQQFHDSKIKFPLARRIPRPATKDQRTVFKANRPTTFRG 235
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BLAST of mRNA_L-elsbetiae_contig1082.764.1 vs. uniprot
Match: H3H534_PHYRM (60S ribosomal protein L18a n=3 Tax=Phytophthora TaxID=4783 RepID=H3H534_PHYRM)

HSP 1 Score: 270 bits (689), Expect = 8.200e-87
Identity = 125/174 (71.84%), Postives = 150/174 (86.21%), Query Frame = 3 
Query:   12 MRQYQVVGRKAVTEKEPNPSVYRMKVFAPNEVTGASQFWYLMHQMRKMKKTTGEILDIVELTEKNARIVKNYGIWLRYDSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRPRSIQIIRTGIVAAKDTKRPDIQQFHNANIKFPLTHRLPRAPKKKFRTTFKASRPTTFLG 533
            +RQ+QVVGRKA TEKEPNP  YRMK+FAPN V   S+FWY +HQM+KMKKTTGEILD+ ELTEKN RIVKNYG+W+RY+SRSGTHNMY+EYRDLTL  AV+QMY+E+AGRHR RPRSIQI+RT IVAAKDT++  ++Q+H++ I FPL+HRLPRAP+K   + FKASRP TF G
Sbjct:    3 IRQFQVVGRKAPTEKEPNPPAYRMKLFAPNPVLAQSRFWYFLHQMKKMKKTTGEILDVNELTEKNRRIVKNYGVWIRYNSRSGTHNMYKEYRDLTLCKAVEQMYAELAGRHRARPRSIQIMRTAIVAAKDTQKHGLKQYHDSKISFPLSHRLPRAPEKHLNSVFKASRPCTFRG 176
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BLAST of mRNA_L-elsbetiae_contig1082.764.1 vs. uniprot
Match: M4BR55_HYAAE (60S ribosomal protein L18a n=19 Tax=Peronosporaceae TaxID=4777 RepID=M4BR55_HYAAE)

HSP 1 Score: 269 bits (687), Expect = 1.640e-86
Identity = 125/174 (71.84%), Postives = 151/174 (86.78%), Query Frame = 3 
Query:   12 MRQYQVVGRKAVTEKEPNPSVYRMKVFAPNEVTGASQFWYLMHQMRKMKKTTGEILDIVELTEKNARIVKNYGIWLRYDSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRPRSIQIIRTGIVAAKDTKRPDIQQFHNANIKFPLTHRLPRAPKKKFRTTFKASRPTTFLG 533
            +RQ+QVVGRKA TEKEPNP  YRMK+FAPN V   S+FWY +HQM+KMKKTTGEILDI ELTEKN+R++ NYGIW+RY+SRSGTHNMY+EYRD+T+  AV+QMYSE+AGRHR RPRSIQI+RT IVAAKD+K+ ++QQFH++ I FPL+HRLPRA +K  +T FKASRP TF G
Sbjct:    3 IRQFQVVGRKAPTEKEPNPPAYRMKLFAPNPVLAQSRFWYFLHQMKKMKKTTGEILDINELTEKNSRVINNYGIWIRYNSRSGTHNMYKEYRDVTMCKAVEQMYSELAGRHRARPRSIQIMRTAIVAAKDSKKLNVQQFHDSKIAFPLSHRLPRAAEKHQKTVFKASRPCTFRG 176
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BLAST of mRNA_L-elsbetiae_contig1082.764.1 vs. uniprot
Match: A0A2D4C8D4_PYTIN (60S ribosomal protein L18a n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C8D4_PYTIN)

HSP 1 Score: 275 bits (704), Expect = 2.810e-86
Identity = 128/174 (73.56%), Postives = 150/174 (86.21%), Query Frame = 3 
Query:   12 MRQYQVVGRKAVTEKEPNPSVYRMKVFAPNEVTGASQFWYLMHQMRKMKKTTGEILDIVELTEKNARIVKNYGIWLRYDSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRPRSIQIIRTGIVAAKDTKRPDIQQFHNANIKFPLTHRLPRAPKKKFRTTFKASRPTTFLG 533
            +R +QVVGRKA T+KEPNP  YRMK+FAPN V   S+FWY +HQM+KMKKTTGEILD+ EL EKN RIVKNYGIW+RY+SRSGTHNMY+EYRDLTL GAVDQ+YSE+AGRHR RPRSIQI+RT +VAAKDTK+ ++QQFH++ IKFPL+HR+PR   K  RT FKASRPTTF G
Sbjct:  200 IRHFQVVGRKAPTDKEPNPPAYRMKLFAPNAVIAKSRFWYFLHQMKKMKKTTGEILDVNELVEKNKRIVKNYGIWIRYNSRSGTHNMYKEYRDLTLCGAVDQLYSELAGRHRARPRSIQIMRTAVVAAKDTKKANVQQFHDSKIKFPLSHRIPRPSIKNHRTVFKASRPTTFRG 373
[Close]
BLAST of mRNA_L-elsbetiae_contig1082.764.1 vs. uniprot
Match: A0A1V9Z1Q2_9STRA (60S ribosomal protein L18a n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z1Q2_9STRA)

HSP 1 Score: 265 bits (677), Expect = 5.520e-85
Identity = 125/175 (71.43%), Postives = 148/175 (84.57%), Query Frame = 3 
Query:    3 MVAMRQYQVVGRKAVTEKEPNPSVYRMKVFAPNEVTGASQFWYLMHQMRKMKKTTGEILDIVELTEKNARIVKNYGIWLRYDSRSGTHNMYREYRDLTLTGAVDQMYSEMAGRHRCRPRSIQIIRTGIVAAKDTKRPDIQQFHNANIKFPLTHRLPRAPKKKFRTTFKASRPTTF 527
            M A+ QYQVVGRKA TE +PNP  +RMK+FAPNEV   S+FWY +HQM+KMKKTTGEIL I EL EKN RIVKNYGIW+RY+SRSGTHNMY+EYR +TL GAV+QMY+E+AGRHR RPRSIQI+RT I+AAKD K+P+  Q+H++NIKFPL+HR+PR   K  RT FKASRPTTF
Sbjct:    1 MPAIHQYQVVGRKAPTETDPNPPAFRMKLFAPNEVLAKSRFWYFLHQMKKMKKTTGEILQINELREKNKRIVKNYGIWIRYNSRSGTHNMYKEYRGVTLCGAVEQMYAELAGRHRARPRSIQIMRTAILAAKDCKKPNTLQYHDSNIKFPLSHRVPRPATKNQRTVFKASRPTTF 175
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1082.764.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K1C9_9PHAE9.830e-11894.92Ribosomal_L18A domain-containing protein n=2 Tax=E... [more]
A0A835YZJ5_9STRA2.560e-9679.66Ribosomal protein L18 n=1 Tax=Tribonema minus TaxI... [more]
A0A8D0YIJ2_PIG3.980e-9693.2960S ribosomal protein L18a n=1 Tax=Sus scrofa TaxI... [more]
K3WCT5_GLOUD1.440e-8773.5660S ribosomal protein L18a n=1 Tax=Globisporangium... [more]
A0A8K1FN02_PYTOL2.040e-8772.41Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6XXS3_9STRA7.510e-8772.88Ribosomal_L18A domain-containing protein n=1 Tax=P... [more]
H3H534_PHYRM8.200e-8771.8460S ribosomal protein L18a n=3 Tax=Phytophthora Ta... [more]
M4BR55_HYAAE1.640e-8671.8460S ribosomal protein L18a n=19 Tax=Peronosporacea... [more]
A0A2D4C8D4_PYTIN2.810e-8673.5660S ribosomal protein L18a n=1 Tax=Pythium insidio... [more]
A0A1V9Z1Q2_9STRA5.520e-8571.4360S ribosomal protein L18a n=1 Tax=Achlya hypogyna... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1082contigL-elsbetiae_contig1082:8705..12981 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score359.8
Seed ortholog evalue7.5e-97
Seed eggNOG ortholog2880.D8LL36
Preferred nameRPL20B
KEGG koko:K02882
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000902,GO:0000904,GO:0002181,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0006412,GO:0006518,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009653,GO:0009790,GO:0009791,GO:0009793,GO:0009826,GO:0009856,GO:0009860,GO:0009932,GO:0009987,GO:0010154,GO:0010467,GO:0015934,GO:0016020,GO:0016043,GO:0016049,GO:0019538,GO:0022414,GO:0022625,GO:0022626,GO:0030054,GO:0030154,GO:0031090,GO:0032501,GO:0032502,GO:0032989,GO:0032991,GO:0034641,GO:0034645,GO:0040007,GO:0042788,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044706,GO:0048316,GO:0048468,GO:0048588,GO:0048589,GO:0048608,GO:0048731,GO:0048856,GO:0048868,GO:0048869,GO:0051704,GO:0055044,GO:0060560,GO:0061458,GO:0071704,GO:0071840,GO:0071944,GO:0097159,GO:0098588,GO:0098805,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG2157@1,KOG0829@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Ec32 ortholog description60S ribosomal protein L18a
Ec32 orthologEc-26_003390.1
Exons5
Model size1182
Cds size534
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815301.2861872-UTR-L-elsbetiae_contig1082:8704..87061622815301.2861872-UTR-L-elsbetiae_contig1082:8704..8706Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1082 8705..8706 +
1691682825.7677302-UTR-L-elsbetiae_contig1082:8704..87061691682825.7677302-UTR-L-elsbetiae_contig1082:8704..8706Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1082 8705..8706 +
1622815301.3504224-UTR-L-elsbetiae_contig1082:12335..129811622815301.3504224-UTR-L-elsbetiae_contig1082:12335..12981Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1082 12336..12981 +
1691682825.8305414-UTR-L-elsbetiae_contig1082:12335..129811691682825.8305414-UTR-L-elsbetiae_contig1082:12335..12981Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1082 12336..12981 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815301.296167-CDS-L-elsbetiae_contig1082:8706..87901622815301.296167-CDS-L-elsbetiae_contig1082:8706..8790Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1082 8707..8790 +
1691682825.779061-CDS-L-elsbetiae_contig1082:8706..87901691682825.779061-CDS-L-elsbetiae_contig1082:8706..8790Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1082 8707..8790 +
1622815301.3070817-CDS-L-elsbetiae_contig1082:9860..99651622815301.3070817-CDS-L-elsbetiae_contig1082:9860..9965Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1082 9861..9965 +
1691682825.7895103-CDS-L-elsbetiae_contig1082:9860..99651691682825.7895103-CDS-L-elsbetiae_contig1082:9860..9965Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1082 9861..9965 +
1622815301.3197591-CDS-L-elsbetiae_contig1082:10443..105731622815301.3197591-CDS-L-elsbetiae_contig1082:10443..10573Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1082 10444..10573 +
1691682825.8012593-CDS-L-elsbetiae_contig1082:10443..105731691682825.8012593-CDS-L-elsbetiae_contig1082:10443..10573Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1082 10444..10573 +
1622815301.3296022-CDS-L-elsbetiae_contig1082:11316..114261622815301.3296022-CDS-L-elsbetiae_contig1082:11316..11426Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1082 11317..11426 +
1691682825.81023-CDS-L-elsbetiae_contig1082:11316..114261691682825.81023-CDS-L-elsbetiae_contig1082:11316..11426Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1082 11317..11426 +
1622815301.3388662-CDS-L-elsbetiae_contig1082:12230..123351622815301.3388662-CDS-L-elsbetiae_contig1082:12230..12335Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1082 12231..12335 +
1691682825.820142-CDS-L-elsbetiae_contig1082:12230..123351691682825.820142-CDS-L-elsbetiae_contig1082:12230..12335Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1082 12231..12335 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1082.764.1prot_L-elsbetiae_contig1082.764.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1082 8707..12335 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1082.764.1

>prot_L-elsbetiae_contig1082.764.1 ID=prot_L-elsbetiae_contig1082.764.1|Name=mRNA_L-elsbetiae_contig1082.764.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=178bp
MVAMRQYQVVGRKAVTEKEPNPSVYRMKVFAPNEVTGASQFWYLMHQMRK
MKKTTGEILDIVELTEKNARIVKNYGIWLRYDSRSGTHNMYREYRDLTLT
GAVDQMYSEMAGRHRCRPRSIQIIRTGIVAAKDTKRPDIQQFHNANIKFP
LTHRLPRAPKKKFRTTFKASRPTTFLG*
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mRNA from alignment at L-elsbetiae_contig1082:8705..12981+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1082.764.1 ID=mRNA_L-elsbetiae_contig1082.764.1|Name=mRNA_L-elsbetiae_contig1082.764.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4277bp|location=Sequence derived from alignment at L-elsbetiae_contig1082:8705..12981+ (Laminarionema elsbetiae ELsaHSoW15)
AGATGGTTGCCATGCGCCAGTACCAGGTGGTGGGCCGCAAGGCCGTCACG
GAGAAGGAGCCGAACCCGTCTGTGTACCGCATGAAGGTGAAGGATTATGA
CTTTTGAAGTTGCTTATACATATGTTGTACATACACGATAAGATGGGTAC
GACTGCTGTACAAAACTGCTGAGATGTTTTAGTTTATTTCACGCTCGTGG
CTGGTTCTCTTTGTAACTTGTTTAGGAAAAATGCCCTCGCTCTTTCTCCG
AACTGGGTCTGGCGTGAAACCTGGATTTTTCCTATCTTGCGGAAGGGACA
GAAAGGGCGCGTGCAAAACCTAAACCTTCTGCGCGGTTGTTGCCAGGTCG
GGGGTGGTGGTGTGGTGATGTTGCTGCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCCCCCCGCCGCTCC
CCCCCCCNNNNNNNNNNGGGAAAGAAAGGGGGCGTGCAAAACCTAAACCT
TCTGCGCGGTTGTTGCCAGGGCGGGGGGGGGGGTGGGGGGTTGTTGCTGC
CCCCCCCCCCCCCGCGCGCGCGCGACGCCGAACTGCAACACGCTGGCACG
CCGTGGCACCTGTGTGCGATCCATAACCTACCAATGCATATGATATGTAC
GTCGCCTACTAGACCTACAAATTGTACGCTCCGACCATGTGTCGTGTGGT
TTGTTGCAGCACCGGACGGGAAGTAGGGAAGACGAGATTTTGTTGAGCAT
TCTTTGCAAAGCGATGGTCGTGTATATTTTCCTATACAATAGTACACATA
CCTCGCGGACGTTTCGGTCGTGAAGACATACGTCCCTGATATGCGGCTGA
AATGCCTACATATATTGTGGAAAGTGCTGCTCGCCCCAGTTGCATATGCC
TTGCCTTGCGGTGTTCGGAACGCGCGTGTTGGTGTGCTGCTGCGCTACGC
AAAGTAAGTAGTTTGCGGAGGTTTGCGGTGGTGTTTTGAGGCGCCCCCCA
GCTGCTCCTGCTGCTGCAGCTTCCTTTGTTTGCTTGTTTTTGTCAAGGTT
GCACAGTTAGTTGCCGGTGTTCGGCACGCACCACATTGCCTCTTATCTCT
CTCTGTGTGTGTATTCTCACCTCTCTTCTGTTTGTTCCTGTTTTCCGCTT
CTTAAGGTGTTCGCGCCCAACGAGGTGACCGGCGCCTCTCAGTTCTGGTA
CCTCATGCACCAGATGCGCAAGATGAAGAAGACCACCGGGGAGATCCTTG
ACATCGTCGAGGTAGGTGCCGGTGCTGCCGGGTGCCGTGTGTTACGTTGT
GTCGTTCTGCGCACAATGGTTTACTCGGCCGACGGTAAAGCGTCAGGTTT
TTTGAGAAAACCAGGAACAGATGTCGGAGGTTAAAACTGAAAATGAGGAT
GGGCTTTGATTATGAAGTTGTGCTTCTTATGTATTTAAATGCCGAGGTGG
GGTAAGGTAGAGGGGGGCTTGGTGGGGCGGTTTTCAGACGAACAAGATGT
TGTCCGCTTGTCGGTTAAATGAAAGCGCGGTGTTGTGTTCGCTCGGTTCG
TTCGCGAGCTTGGTATCTACGACTATCGATGCAATACTTTCCTGCTTTTT
GTGACGCTCCCCTCGCCCTCGCCCCCGCGACCTCGCGTTTCTCTTGCTGC
TGCTGGACTCTCCGGGCTCGAAATCAATCGATCACCTGCCGTGCATCATC
CTGCTCTCTTGGAAACTACGCCAAAATAATTACGAGCAGCTGACGGAGAA
GAACGCTCGCATTGTCAAGAACTACGGCATCTGGCTCCGTTACGACTCTC
GCTCCGGCACGCACAACATGTACCGCGAGTACAGGGACCTCACCCTGACA
GGCGCCGTGGACCAGATGTGTGAGTGGAGTGGGGCGCGCATCATCCATCC
CCCTTCTGTGTAAACGTTGGCCGTGGTCGTGTGTGAGGAAATGGCCCTTG
TACCCACCGACAGAGGGCTATTGAGACCGACGTCGGTGTGTGAGTGTTGC
AGATGGGACCTCTCCCGTGTGACTTGAGTCGTTCTCCTCTGCGCGACCGA
CCGGCGTAAGAACCGGCAGAGAGGTGTTGAGGCGTAGATCGATGTATGTC
CACGTCCAGGATCGATCGATAAGAGTTTTGACGGCACGCGCACGCAAGTT
TGTGGTGGCGGCGTGTTAGATGCATGTGTGAGACCCTGCCCTGGCTGCCT
AGAAAGAAAGCAAGCTTTCTTGTATTATGTTTTCGTGTGTGTGTTATTAC
ACCAACCCATGCTGCATGGTCGAGCCGAAAAGAGCAGCATGGCGAAAAGC
GGCTGTGCGTCGTTCTCTCGACGATTCAAATCTCAGTGTTTCAACGCCAG
CTACCGCCGTCGTGCACGCTGCCTCCGGTGCGCTGTCATCGCTGCTGACG
CTCTTCCCCCCGAACCTCCCCCCCTCCCCTCCGCTTTTGCTCGATAAACG
CATGCATATGCGATCTGGTCGGGCGGCGGCGTGGCCTGTTGGGGCTATTT
TTTTATTTATTTTGCCCACCAATCTTCGATCGCTATCGGTGGGGTCCGCT
CCATCGCTGTGTATCGGCGGGGAACATCGTGTACCACCGTACCATGCACT
TGGCGTACGCAGACTCGGAGATGGCTGGCCGCCACCGGTGCCGCCCTCGT
TCCATCCAGATCATCCGCACGGGGATCGTGGCGGCGAAGGACACCAAGCG
CCCGGACATCCAGCAGTTCCACGTGAGGCTTTGTTCGGTTTTCAGTTTTC
ATCTCTTTGCGTTCTGTGTGTTGTGTTATGTAGCACTTGTTCGAGAGGTG
TGCATCGCATTAATGGCTGGATTTGGTGTTCACTTCACTAGCTGTCCTGT
CTGCACCTTCAAAATCTCGCGATTTTAAGGCCCGGCTTTGAATCAGGGTG
TTTTGTTTTCCCACTCAGCGCCGCCCCTCTTTTGAGGTAATGGCTGATAG
CCTTACCGTCTCTTTCTCTTTGCCGTTCGGCTGGCATGGTCTGGTAACTC
TCACGGAAAAATAATCCAAAGGAACCTTTCCTTACCCGCCGGTCAAGGTT
GCGCCGCTTTTCGCTTGTGATTTAATTGCTGGGAAATTGCAAGCGTTGAT
AGAACCGACCTGCCAGCCACTGCAGGCTGTCCGAGAGAAGTGGACGGATT
TGCTCTTTAAAACATTAATCGAGCGGATATGATGATGTTCCATGGGGACC
ACAGCGGCGAACATGACACAAAATCTTTTCTTATTCCCTCTTGTTAGGCA
TTCGCCCTATGACGTATCGAAACGATTTCAGGAGCGTTCTTCATTTTCAC
ACAAGTTGTGCTTTTGAAGGGGGGAGGAGAAAGGCTGAAGGCTCGAAATA
TCGAGGGATGACAATGCCTCAAAGTGTCCCAAGATCGTGTTGCGCCTGTT
ATTTTTCCTTCTGACGTGCATGTCTCCCTCCCTCCCTCCCTTGAAACTCT
CGCTCGCGTCTCCCTCCGTGTCGTGTCCTGTCTCAACTTTCTTCATGGTG
TACTGGATAATCGTAAAATGCCACAGAACGCGAACATCAAGTTCCCGCTC
ACGCACCGCCTGCCGCGCGCGCCCAAGAAGAAGTTCAGGACTACCTTCAA
GGCGTCGCGCCCCACCACCTTCCTGGGCTAAATGACCATCTTTCTGCAGC
GGTAGACGCTGTTTCGACGAGAGATGCCGGTGTCGTTAGCTGCGAGGATC
CTTGCCGCCTTCGTTCGCTAGTGTTGAGACGGTGTGCGTTGGTGTCGAGC
GTCGCTTTGGGCAGTATCATGCGACGGCGGTGAAATAGTTCGGGCTTGAC
TTTTTTGAAGCGCAACGCGGTATTTCTTTTGTCCCGTGACGGTGGTACGA
GCGCCAAGCGCAGGCAGGATCTTGGTTTTGGATGGGTCGGTCTGGTCTCA
TCAGCAGGAGCTAAAAACACTGAAAACACACAAACAACATTAAGCCGAAG
GAAGGCTGTGCGTCCTCAGTGTACCTGCGAGGCGCAGGCAGGCACTGCGA
GACGAGCACAAACCACTCACGGTCATGAGCTTGATAATTTCGTTCAATGA
TCGCACTGTGGTTGTTCTCTAGGTGTCGTTTTCTCTTGAAGGGAATCGGC
CATTATCCCAAGAAATAAATCTAGCTGTCTGATTGATGTGTGTGGCCACC
TGCTGCTGTGTACCGTACATGCTCTGGCATTGTCAACTTCTCCAGTTAGA
AATCTGGCTGGCGACCTTTTTTCGGTCGCCTCTGGAGATCCGACTTCATT
TCACTTGAAAAATGCGTCGTATCAAAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1082:8705..12981+

>mRNA_L-elsbetiae_contig1082.764.1 ID=mRNA_L-elsbetiae_contig1082.764.1|Name=mRNA_L-elsbetiae_contig1082.764.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1068bp|location=Sequence derived from alignment at L-elsbetiae_contig1082:8705..12981+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTTGCCATGCGCCAGTACCAGGTGGTGGGCCGCAAGGCCGTCACGGA
GAAGGAGCCGAACCCGTCTGTGTACCGCATGAAGATGGTTGCCATGCGCC
AGTACCAGGTGGTGGGCCGCAAGGCCGTCACGGAGAAGGAGCCGAACCCG
TCTGTGTACCGCATGAAGGTGTTCGCGCCCAACGAGGTGACCGGCGCCTC
TCAGTTCTGGTACCTCATGCACCAGATGCGCAAGATGAAGAAGACCACCG
GGGAGATCCTTGACATCGTCGAGGTGTTCGCGCCCAACGAGGTGACCGGC
GCCTCTCAGTTCTGGTACCTCATGCACCAGATGCGCAAGATGAAGAAGAC
CACCGGGGAGATCCTTGACATCGTCGAGCTGACGGAGAAGAACGCTCGCA
TTGTCAAGAACTACGGCATCTGGCTCCGTTACGACTCTCGCTCCGGCACG
CACAACATGTACCGCGAGTACAGGGACCTCACCCTGACAGGCGCCGTGGA
CCAGATGTCTGACGGAGAAGAACGCTCGCATTGTCAAGAACTACGGCATC
TGGCTCCGTTACGACTCTCGCTCCGGCACGCACAACATGTACCGCGAGTA
CAGGGACCTCACCCTGACAGGCGCCGTGGACCAGATGTACTCGGAGATGG
CTGGCCGCCACCGGTGCCGCCCTCGTTCCATCCAGATCATCCGCACGGGG
ATCGTGGCGGCGAAGGACACCAAGCGCCCGGACATCCAGCAGTTCCACAC
TCGGAGATGGCTGGCCGCCACCGGTGCCGCCCTCGTTCCATCCAGATCAT
CCGCACGGGGATCGTGGCGGCGAAGGACACCAAGCGCCCGGACATCCAGC
AGTTCCACAACGCGAACATCAAGTTCCCGCTCACGCACCGCCTGCCGCGC
GCGCCCAAGAAGAAGTTCAGGACTACCTTCAAGGCGTCGCGCCCCACCAC
CTTCCTGGGCTAAAACGCGAACATCAAGTTCCCGCTCACGCACCGCCTGC
CGCGCGCGCCCAAGAAGAAGTTCAGGACTACCTTCAAGGCGTCGCGCCCC
ACCACCTTCCTGGGCTAA
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