mRNA_L-elsbetiae_contig10811.759.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10811.759.1
Unique NamemRNA_L-elsbetiae_contig10811.759.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10811.759.1 vs. uniprot
Match: D7FIC1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIC1_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 1.030e-24
Identity = 57/90 (63.33%), Postives = 67/90 (74.44%), Query Frame = 1 
Query:  100 LDLNATGA-SGSMWSALASDLKILQMAVVGPSGRKWPDSLNVFDTVWRERQTLGALVLPLLFALTVVSEAVQRSIGGAASAVTGATALGG 366
            LD   T A SG  W  LASD +I+++AVVGPSGR+WPDSLNV DTVWRERQ LG L+LPLL  + VVSE +QRSIGG A+A   A+  GG
Sbjct:  322 LDAAETEATSGWNWGTLASDARIVRVAVVGPSGRQWPDSLNVLDTVWRERQALGMLLLPLLLPMMVVSETLQRSIGGVATATVAASGSGG 411
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10811.759.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIC1_ECTSI1.030e-2463.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10811contigL-elsbetiae_contig10811:946..3026 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score108.6
Seed ortholog evalue2.3e-21
Seed eggNOG ortholog2880.D7FIC1
Hectar predicted targeting categoryother localisation
EggNOG OGs2SW75@2759,COG1916@1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-11_001340.1
Exons3
Model size403
Cds size402
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10811.759.1prot_L-elsbetiae_contig10811.759.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10811 946..3026 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815300.9736643-CDS-L-elsbetiae_contig10811:945..10561622815300.9736643-CDS-L-elsbetiae_contig10811:945..1056Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10811 946..1056 +
1691682825.6361825-CDS-L-elsbetiae_contig10811:945..10561691682825.6361825-CDS-L-elsbetiae_contig10811:945..1056Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10811 946..1056 +
1622815301.0128217-CDS-L-elsbetiae_contig10811:2044..21821622815301.0128217-CDS-L-elsbetiae_contig10811:2044..2182Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10811 2045..2182 +
1691682825.645531-CDS-L-elsbetiae_contig10811:2044..21821691682825.645531-CDS-L-elsbetiae_contig10811:2044..2182Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10811 2045..2182 +
1622815301.0245953-CDS-L-elsbetiae_contig10811:2873..30261622815301.0245953-CDS-L-elsbetiae_contig10811:2873..3026Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10811 2874..3026 +
1691682825.6554217-CDS-L-elsbetiae_contig10811:2873..30261691682825.6554217-CDS-L-elsbetiae_contig10811:2873..3026Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10811 2874..3026 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10811.759.1

>prot_L-elsbetiae_contig10811.759.1 ID=prot_L-elsbetiae_contig10811.759.1|Name=mRNA_L-elsbetiae_contig10811.759.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=134bp
KEHGGTREGSSGGGGGGALGAAAAATAGVRGLDLDLNATGASGSMWSALA
SDLKILQMAVVGPSGRKWPDSLNVFDTVWRERQTLGALVLPLLFALTVVS
EAVQRSIGGAASAVTGATALGGGGGSDGAAAGVG
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mRNA from alignment at L-elsbetiae_contig10811:946..3026+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10811.759.1 ID=mRNA_L-elsbetiae_contig10811.759.1|Name=mRNA_L-elsbetiae_contig10811.759.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2081bp|location=Sequence derived from alignment at L-elsbetiae_contig10811:946..3026+ (Laminarionema elsbetiae ELsaHSoW15)
AAGGAGCACGGCGGTACGAGAGAAGGCAGCAGTGGCGGCGGCGGGGGGGG
GGCTCTGGGTGCTGCTGCTGCTGCTACCGCGGGTGTTCGAGGGCTTGACC
TGGACTTGAATGTGAGCGAGAGGAGAGAGGAGAAAGGGGGGGGGGGGGGG
AGGGGAATAAAAACAGCACCCGCGCTGCTGTTACGTACGCTGTTGCTTGA
AAGGTTGGTTCTCCCGGGACGAAGCCCCCCCCCACGAGGCCCCGATGAGG
GGGCTCCAAGGCTCCACAAGCTTTAAAACAAGGCTCCTTCTTTGTAGACC
TGCCGTTTTGTAGGATAAATGCCGTTGGGTTGACAGACGTCTCTGATGAG
ACGCGGAGGTCGGGTGCGTGCGGGAGAAAGAGCCGCCCCACGCGCCAAGA
TGGGCCTGTGTGGCAATCTCAGCAGAACGTGTTGGAAAATGTGGGCCCGT
GTGGCAATCTCAGCAGGATATGTTGAAAAAGATGGGCCTGTGTAGCAATC
TCAGCAGGACGTTTAACAAAAGATGGACCTGTGTGGCAATCTCAGCAGGA
TATATGTGAAAATGATTGGCCGGTGTGGTAATCTCAGCATGACGCGTTAA
AAAAAGCGTTGTCGTTGTTCCGCGCGAAGCTGTGCGTGTCTGTGTGTGTG
TTTTCCGCGCGATCGGGCGCAACTGTTTTCATAACGAAACACCAGCGAAA
GCAGCGCCCGCGGTAGGCCACACGGTGCATATTCCAATGTGGTACATATG
TATTTGATTGTTCAGGTTCCGCACACCGCATGTTTTTGGCGTCTGGACTT
GATGCGCCCTTGTGCGCGCCAGGCAAGTTTTCGCCGCGAGCTCTCGTCCC
ACCGTCCGTTGTGGTCGGGGTTTTGTTTTTGTTTTTCCGCCGGGGTATTT
AGCTTCTACATTTTTTTTTTTGCGGTTCTCGATGCATGTAGTAGAGCTCG
TGCCGGTTATAGGGCCGGCGACATCCTCACCAACCCGCGAAGAGATTTGG
CCAGCATCCAGCACTCACCCCGCGCAGAAAGACGACAACTCCCCCGTGAC
TAACGCGCACTGGTGCGTGGGGGTGTTGATTGATGCGCACTGGTTACAGG
CTACGGGGGCATCAGGCTCGATGTGGAGCGCGCTAGCCTCGGACCTGAAA
ATCCTGCAGATGGCTGTGGTCGGCCCCAGCGGGAGGAAGTGGCCGGACTC
GCTCAACGTCTTCGACACCGTGTGGCGAGAGCGACAGGTTAGTTACCGTA
CGCCTCGTCGCCCTCATCCCTTCCCTTTCCCTATCTCGCCGCCATGACCC
GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCGCA
GCTATATAGGTATCATACATACGCAGCTCTCTCGATCGTGGCCCGGTGCA
AACGGGTTTCGAATCAATCGTGAGGTTTAGAGACATCGCATTAGTTTGTG
GATGGCAGAAGGAGAAAGCCGTCGACGATGGAAAAGGGACCCTTCTCGCG
ACAGAAATCTTAAGGGAGGCAAGCACCGCAGAAGGGGGGGGGGGGGGGGG
GGAAAGGGACCTTTCTGCGTGACCACCGTTCAGTATTACTGCGGCAAGAT
GCCCTCGTGACAAGGAGCCCATCGAGCACGGGAAATAAATGTGAAAGAGG
TCTTCACAGAGAGAGCGAGGGAAGCAGAGAAAGCGGGTGGGGGTGGCCAC
CGAAATATCACACCTCAAGAGCCGGTGTGTCAGATCCTCCTTCATTCCGC
GTTCAATCCACCTGTTCATCCTGGCCAGACTTAAAAAGCGACTTCTTGCC
CCCACACCAGCCGAATTTATGTCGACGTTATTCTTTACGTATATGCTTTA
CCTCCTTTTCCCCGCTCTTCCATTTTCACATCCCGTTGTACTACCCGTTC
GCGAACGTTCGACAAACGACCACCGAAGACTCTCGGAGCGCTCGTGCTGC
CCCTGCTCTTCGCCCTGACGGTGGTTTCGGAGGCGGTGCAGAGGTCGATC
GGGGGTGCGGCGTCTGCGGTGACGGGGGCCACCGCCCTCGGCGGTGGGGG
CGGCAGTGACGGCGCCGCCGCCGGTGTTGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10811:946..3026+

>mRNA_L-elsbetiae_contig10811.759.1 ID=mRNA_L-elsbetiae_contig10811.759.1|Name=mRNA_L-elsbetiae_contig10811.759.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=804bp|location=Sequence derived from alignment at L-elsbetiae_contig10811:946..3026+ (Laminarionema elsbetiae ELsaHSoW15)
AAGGAGCACGGCGGTACGAGAGAAGGCAGCAGTGGCGGCGGCGGGGGGGG
GGCTCTGGGTGCTGCTGCTGCTGCTACCGCGGGTGTTCGAGGGCTTGACC
TGGACTTGAATAAGGAGCACGGCGGTACGAGAGAAGGCAGCAGTGGCGGC
GGCGGGGGGGGGGCTCTGGGTGCTGCTGCTGCTGCTACCGCGGGTGTTCG
AGGGCTTGACCTGGACTTGAATGCTACGGGGGCATCAGGCTCGATGTGGA
GCGCGCTAGCCTCGGACCTGAAAATCCTGCAGATGGCTGTGGTCGGCCCC
AGCGGGAGGAAGTGGCCGGACTCGCTCAACGTCTTCGACACCGTGTGGCG
AGAGCGACAGGCTACGGGGGCATCAGGCTCGATGTGGAGCGCGCTAGCCT
CGGACCTGAAAATCCTGCAGATGGCTGTGGTCGGCCCCAGCGGGAGGAAG
TGGCCGGACTCGCTCAACGTCTTCGACACCGTGTGGCGAGAGCGACAGAC
TCTCGGAGCGCTCGTGCTGCCCCTGCTCTTCGCCCTGACGGTGGTTTCGG
AGGCGGTGCAGAGGTCGATCGGGGGTGCGGCGTCTGCGGTGACGGGGGCC
ACCGCCCTCGGCGGTGGGGGCGGCAGTGACGGCGCCGCCGCCGGTGTTGG
GACTCTCGGAGCGCTCGTGCTGCCCCTGCTCTTCGCCCTGACGGTGGTTT
CGGAGGCGGTGCAGAGGTCGATCGGGGGTGCGGCGTCTGCGGTGACGGGG
GCCACCGCCCTCGGCGGTGGGGGCGGCAGTGACGGCGCCGCCGCCGGTGT
TGGG
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