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Homology
BLAST of mRNA_L-elsbetiae_contig1081.758.1 vs. uniprot
Match: D7G7I8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7I8_ECTSI) HSP 1 Score: 139 bits (351), Expect = 4.540e-38 Identity = 95/160 (59.38%), Postives = 112/160 (70.00%), Query Frame = 2
Query: 248 MLAWAEQTDKRVATGRLPPLGSRPPPSAAEAVEV-------ADGSLLSDQEQAQMETLSGLLSKRRREXXXXXXXXXASLRAAVVGLSASVDNVGD----EIFDGTASSPDSGDGR-------AETDDLVRNQIYGSREVRDKVYLYAWSLMKNRQEEAE 673
ML WAE+TD+R+ATG+LPPLGSR PPS AV V A SLLSDQEQAQM TLS LLS XXXXXXXX ++LRAA+ GLSASV+ D ++ T+S PD+ DG AE +D++ N IYGSREVRD+VYLYAWSLMKNRQ+ AE
Sbjct: 1 MLVWAEETDRRIATGQLPPLGSRRPPSGDGAVTVTAAEQQGAGASLLSDQEQAQMATLSELLSXXXXXXXXXXXXXESALRAAIAGLSASVEKDTDAKALDVAADTSSGPDTSDGDVTAAGHVAEAEDIIPNHIYGSREVRDQVYLYAWSLMKNRQDAAE 160
BLAST of mRNA_L-elsbetiae_contig1081.758.1 vs. uniprot
Match: A0A6H5JMF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMF6_9PHAE) HSP 1 Score: 120 bits (302), Expect = 2.160e-30 Identity = 84/157 (53.50%), Postives = 102/157 (64.97%), Query Frame = 2
Query: 194 VEDIPDLYRVTPAPTYEEMLAWAEQTDKRVATGRLPPLGSRPPPSAAEAVEV-------ADGSLLSDQEQAQMETLSGLLSKRRREXXXXXXXXXASLRAAVVGLSASVDNVGD----EIFDGTASSPDSGDG-------RAETDDLVRNQIYGSRE 610
+ + + RVTP PTYEEML WAE+TD+R+ATG+LPPLGSR PPS AV V A LLSD EQAQM TLS LLS XXXXXXXX ++LRAA+ GLSASV+ D ++ T+S PD+ DG AE +D++ N IYGSRE
Sbjct: 28 LRSVCNAIRVTPVPTYEEMLVWAEETDRRIATGQLPPLGSRRPPSGDAAVTVTAAEQQGAGACLLSDHEQAQMATLSELLSXXXXXXXXXXXXXESALRAAMAGLSASVEKDTDAKALDVAADTSSGPDTSDGDITAAGHEAEAEDIIPNHIYGSRE 184
BLAST of mRNA_L-elsbetiae_contig1081.758.1 vs. uniprot
Match: W7T7R7_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T7R7_9STRA) HSP 1 Score: 58.2 bits (139), Expect = 2.300e-6 Identity = 49/190 (25.79%), Postives = 81/190 (42.63%), Query Frame = 2
Query: 161 AVQPQEGKRSD--VEDIPDLYRVTPAPTYEEMLAWAEQTDKRVATGRLPPLGSRPPPSAAEAVEVADGSLLSDQEQAQMETLSGLLSKRRREXXXXXXXXXASLRAAVVGLSASVDNVGDEIFDGTASSPDSGDGRAETDDLVRNQ------------------------IYGSREVRDKVYLYAWSLMK 652
A+ P R + +D + V P +EEMLAWA + D RV R+ LG + V++ LS +++ +M T+ +LS+R LR A+ + + + + + + +A+ D L+ N+ IYGS+EVRD++YLY WSL+K
Sbjct: 110 ALSPSAAARLERLPDDTEERIEVVRVPDFEEMLAWAIRMDARVERRRIAGLGGLVAEPPSPQVDLTKRRPLSKRDEDKMNTVIRMLSQRAESKRVFYPNEMEELREALRDMESLMKDDAEHLK------------KAQQDALILNKAGRAKSRFQKKREVMIEETGDFDPIYGSKEVRDQIYLYLWSLVK 287
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Ec32 ortholog description | expressed unknown protein |
Ec32 ortholog | Ec-02_000450.1 |
Exons | 6 |
Model size | 712 |
Cds size | 687 |
Stop | 1 |
Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815300.8089726-UTR-L-elsbetiae_contig1081:19416..19441 | 1622815300.8089726-UTR-L-elsbetiae_contig1081:19416..19441 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1081 19417..19441 + |
1691682825.5699804-UTR-L-elsbetiae_contig1081:19416..19441 | 1691682825.5699804-UTR-L-elsbetiae_contig1081:19416..19441 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1081 19417..19441 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815300.8201852-CDS-L-elsbetiae_contig1081:19441..19591 | 1622815300.8201852-CDS-L-elsbetiae_contig1081:19441..19591 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1081 19442..19591 + |
1691682825.580398-CDS-L-elsbetiae_contig1081:19441..19591 | 1691682825.580398-CDS-L-elsbetiae_contig1081:19441..19591 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1081 19442..19591 + |
1622815300.8345244-CDS-L-elsbetiae_contig1081:20498..20543 | 1622815300.8345244-CDS-L-elsbetiae_contig1081:20498..20543 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1081 20499..20543 + |
1691682825.5895698-CDS-L-elsbetiae_contig1081:20498..20543 | 1691682825.5895698-CDS-L-elsbetiae_contig1081:20498..20543 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1081 20499..20543 + |
1622815300.8502789-CDS-L-elsbetiae_contig1081:21185..21353 | 1622815300.8502789-CDS-L-elsbetiae_contig1081:21185..21353 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1081 21186..21353 + |
1691682825.5996-CDS-L-elsbetiae_contig1081:21185..21353 | 1691682825.5996-CDS-L-elsbetiae_contig1081:21185..21353 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1081 21186..21353 + |
1622815300.859595-CDS-L-elsbetiae_contig1081:22088..22168 | 1622815300.859595-CDS-L-elsbetiae_contig1081:22088..22168 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1081 22089..22168 + |
1691682825.6091442-CDS-L-elsbetiae_contig1081:22088..22168 | 1691682825.6091442-CDS-L-elsbetiae_contig1081:22088..22168 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1081 22089..22168 + |
1622815300.8683639-CDS-L-elsbetiae_contig1081:23384..23526 | 1622815300.8683639-CDS-L-elsbetiae_contig1081:23384..23526 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1081 23385..23526 + |
1691682825.61789-CDS-L-elsbetiae_contig1081:23384..23526 | 1691682825.61789-CDS-L-elsbetiae_contig1081:23384..23526 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1081 23385..23526 + |
1622815300.8793905-CDS-L-elsbetiae_contig1081:23854..23956 | 1622815300.8793905-CDS-L-elsbetiae_contig1081:23854..23956 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1081 23855..23956 + |
1691682825.6271324-CDS-L-elsbetiae_contig1081:23854..23956 | 1691682825.6271324-CDS-L-elsbetiae_contig1081:23854..23956 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1081 23855..23956 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1081.758.1 >prot_L-elsbetiae_contig1081.758.1 ID=prot_L-elsbetiae_contig1081.758.1|Name=mRNA_L-elsbetiae_contig1081.758.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=229bp
MTFAVAPCFGSEMVAYVPTFALAPAELARRSPRRSGWSGRWSALCAVQPQ EGKRSDVEDIPDLYRVTPAPTYEEMLAWAEQTDKRVATGRLPPLGSRPPP SAAEAVEVADGSLLSDQEQAQMETLSGLLSKRRREGSLLTEQEEASLRAA VVGLSASVDNVGDEIFDGTASSPDSGDGRAETDDLVRNQIYGSREVRDKV YLYAWSLMKNRQEEAERTTKEQERQRRR* back to topmRNA from alignment at L-elsbetiae_contig1081:19417..23956+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig1081.758.1 ID=mRNA_L-elsbetiae_contig1081.758.1|Name=mRNA_L-elsbetiae_contig1081.758.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4540bp|location=Sequence derived from alignment at L-elsbetiae_contig1081:19417..23956+ (Laminarionema elsbetiae ELsaHSoW15) CGCCAATTCTTCACACGATCTCACGATGACCTTCGCGGTAGCCCCTTGCT
TTGGCAGTGAAATGGTCGCGTACGTTCCTACTTTTGCCCTGGCGCCAGCA
GAACTGGCCCGCCGATCGCCGAGGCGGAGCGGCTGGAGCGGGAGGTGGAG
TGCCCTGTGTGCGGTGCAACCCCAAGTGAGTACCATTCTGAGCTCTGCCC
TCTGCCCCCCGAGAGCCCAGCCATGGGCTGACGGCGTGACTCACGACGCA
TGATACATGCCACATGACGCGTTCTCAGCGAGCGAAGCATCTGCTGTGCA
GGGAACTAGAAAATCTACTTGCCGGTGGCGAGAGCATAATATGCAGTACG
TCCACAGGAGTCATACAATGTACGTTGTACAACTCCCCCCTTCAGACGTT
GCTCATGAACGGAACGGTTCAGGGGGTGAAGCAAGGGAGCGTATCATGCG
TCTGATACCTGCATGCCCGTTCTGCCCGACTTCGAGCGTTTTTCAACGAT
TTTAAATTGTCGGACACCGGGGGGAGAAACAAGAGGCCTCCGTGGGTGTG
TGTGTTTGCCATCGTCAGAAATCACACACAGAGAACAGCCAGATACGAAC
AGCTAGCTGTCAAGAACCTGGTACTTGTTGACTGCTGTTCGAGTTGCGCA
GAACAATGAGTTCACCGAGGAAAGTGGCGGCTGGTGCGCGCCTGACAGCA
GTGCTAAAGAGCCAGAACTGGTGCACGTCGCCGTGCGGCGCTAGCCTGAA
AAGTCTCCTGAAAAGCCTGTTTCCAGTGCCTGGTTTCACCAACAGCCCAC
AGCCTCTGCACCCGGAGAGAATTGAATCTATCTATAATCATACATGCATA
CACGCAGAACTGGTTTGTAAACAGCAGTGCAGGAGGTTTGAGTCACTCCC
AGCCCTTTTTGGTGCCCGTTTTCTCGTGGGTCGTTACGTATCCCGATACA
CGATCTCCGATGGGAAGCCGATGGGAGCCACACACGAGCCTATATGCGCG
AGGAATCAAGTTTACCACTTTCGCGAAAAATGTTAATCGTCATCCCTCTG
CGTCCTTCGTGCTGCGACCGTTACTCATACAGGAAGGCAAACGAAGCGAC
GTCGAGGACATCCCAGACCTGTACAGGGTGAGCTTTTCCCCACCCACGTG
CGCACGTGGGACTAATATCTTCCATCGCCAGCTTTGAAGCCCTACTGTAG
TGTGGAAAAACGCTACAATGTGTAGAAGGGGGCTTTCGGGGTTCCAGTTT
TCGCTGTGTACAAGCTCGAGCGGCCCGCGTTATTATTTTTTGTTCAACAT
TTATTTCCAGCGCTCGAAGGACTCCTTGCCACGAGAAGGCAGCTTGCCAG
AGCTCTAAATGGTGATCGCACAGAAAGGTTTCTCTCCCTGAGGCCCCTAC
CCCCGTTCTGCGGTGCTTGCCTTCGATTTTGAGCGCGACAAGAGTTTCGG
CGGTCTCTTCCCTCAAGAGATGTGTCTATGATATCCACCCATCAATGTTG
TAAATCGGTGAGTTAGGATGTCTGTTCACTCTTTTCTATCTTTGCACGCT
AAGGCTGAGGAACTTGACACAGCAGTGCACAGGTGTGGACAGAACGACGA
GCGTGTCTGATCCACAAAGAAAAACGTCATGCTCATTTCGTTCTCACTGA
ATACAGCAGATGTTTCCCCACGTCGACATCCATCACCCCGGCTATTGGTT
TCACGATGGACGTCGGGGTAGGTCTTCCACTTTGTTTATGGGCGTTGTGC
TTGATTGCCTCGCTCTCAGGTTACTCCTGCCCCTACCTACGAGGAGATGT
TGGCGTGGGCAGAGCAAACGGACAAGAGAGTCGCCACCGGGCGGTTGCCG
CCGTTAGGCTCGCGCCCGCCGCCGTCCGCAGCAGAGGCAGTGGAAGTGGC
GGATGGCAGCCTTCTCAGCGATCAAGAGCAGGCCCAGGTGCGCTGGACTC
TCACTGTTGGAAGGGAATTTTAGCTGCCAAACGCACGTGTTGTGTGGTGC
TGAGGGTGTGTGTATCGGGAGTGCCTTTTTGCTTCATGTAGGAATAGCTA
ACTCACAGCATCTCGTCCGAAAACCTTTTAAGTTGCCAGCTTTCTCATTT
CCCACAACACCGCAACAATTAGACGTGTTCCGGTCGAACAACGGTTGCAG
GTTTGCGCCCAGGATTAGGTGCGGGTAGGAGCTTGTGTTATGCCTATTGT
GCGGAGCATGTCCAGATGGCAGTGTTGTTGTTGCTGCTCTTCGGACGTGT
CCGTCATGCTGGAAGCTGCTCAGTTGAATAGGGAAATCTTCGTGTGTACC
TTATGTGCTTTTGCTTTGGTGCTTCTTATTTTGTGTGTGCTTTATTTTCG
AGGAGAGCCGAACCGGCTGGCTTGGGGCAAGCGCTTGAACCACGCGGAAC
ACGCGCAGGTTCTGCCAAAACACTGGTGCTGTAATCTATCATTGGAATAT
GTATGTAGCGGCAATTATTCTGGATTACAGGTAGGCGAGAGAAGGTATGG
TTTCCAAAACGACGGAGGTGGAAGATTGCTCTGGCAGAGTTACAGCTTAC
TACCCGGATAGGCCGGACTGGGCCCACGACGACGGACATCGTACGCACTC
CTCGAGGCCCCTTTGAGAATACGCCTGCCCTCCCATCCTCGATGCTTCTT
CACCTGTTCCCCTCCTTCCAAGATGGAAACTTTGTCTGGGCTTCTGAGCA
AGCGGCGGCGGGAGGGCTCCCTCCTGACCGAGCAAGAAGAGGCTTCCCTT
AGGCAAGATACGTAGGCTGCAAGTGGGGGAAGGGGTTGTTGGTTGGAGCC
CCAATCATTATCTTGGGCCGGTGGTTTGCAGATACTTACACAGGGTTGTT
CCGCGCGTAAGGCCGACATCTCTGGCGTGTGGTTACTGCCAACACACAGG
CTTCCCTTTCCACAAACACGTGTTCCTGACGGAAACAAATCCAAGAACGC
AGGAGCCGTCGCGCGAAAAAGGTTTTGTCCCCTGGGCCTTTTTGAACTTC
GAGCCTGCGCTCATTACCGATTCGACCTGGCCTTGATCCCTGCCATCGTT
GTGGCCCATAGAGAAAACTAGATCTCTTGGACTTTGGCGTGGAGCGATTG
GTTTGGGCTTTGCGCATGCTTCGCTTTCTCCCCAATCTGCCCCACACTTA
GCACCGCTGGGCTTTTCTTTTTCACAGGTGTGTAATATCGAGTACTCTTG
CGCTCTTGCGGCCATGGTAATTGAGAGGATAACCGCCCCTACTAAGCATA
CGACGATGGACAAGGCTGCAAACTGCGAGTTTGGGTTTGCCGCTGCTCGG
CATCGCCAGACGGGGGAGTTAAACCTCAGTGTGTGCGTGTGTGTGCTTTG
GGAATAATTAATTTTTGCGCGCTCGCAAACGGAACACACCATGCTAAAAA
AACGACACATCCAGTGGACCAGATTGAAACCACGATGTTGTTGTGTGCGG
CTTGCTGATTTTGTGCCAGTAGTCAGGGGCGGCGAGGGAGGGTTAGTGTG
TCTACGACAGTCTCCCTCGAGCGACCTCTTCACAGGTTGGACGTAGACCG
CTGACATTTGTAGACAGACATTTGTTCAAACGCAGAGGAAGAGAGAGAGA
GAGAGAGAGAGAGGGAGATAACGCAGTGGGTTGTACGCACTGCTGGCGGA
GAGGAAAAAGGCGCCGATCATGCAGCGCAGACACGCGTGGTATATTGGCT
TATTCGCCTGGGGTTGTGTGATGCGGCGCTTCTCTCCGACTACCCCACCA
TCCCTATCGGCCGCCGTACCAGATGAAAAGTGGGGTGGCTGTTTTGAACG
TAGACCTCGTCGACTAAGCGGTGCTTCATTCTGAATAGGACATTTGGTTG
TCTTGCAGATGGTCGAGGGGCCCAGCACTAGCTCTCGCAACAAGTAATAT
GGACACGCCTCGTATAGCGCTTTACACCCCCCCCCCCCCCCCTGCTCGAA
CTTCAATTTGGTCTGCAGAGCCGCTGTCGTTGGCCTTTCAGCATCAGTGG
ACAATGTAGGCGACGAGATATTTGACGGCACTGCTTCCTCCCCAGATTCC
GGTGATGGTAGAGCGGAGACGGACGACTTGGTCCGCAATCAAATTTACGG
ATCGCGAGAGGTGAAAAGATATTGTTGTTGTTGTTGTTGTTGTTGATGTT
GTTCTGTTACTGTTGCTGTTGTTGTCGTCGTTGTCATCGTCCTCGTCAGC
GTCATCGTTGTGGTTGCTGATGTGTGTGTGTGTCCTTCCCATTTATTTTG
GCGACAGTCCCCCCTAGTGGAAACGTGTATTACACCTTGCGGTGTACTAA
GAGGTACTACACTTTGCAGTGCATTTGTCTGTACAACTAGAACCAACCGA
GGTCACGCATAAAGAGCTTTATTCCACGCACGCTTGTGCTCGTCTTCGTA
TTGATGATGCTTCCCGGCTGGCAACAAACCATCACAAGGTGCGCGACAAG
GTGTACCTTTACGCCTGGTCCTTGATGAAGAACAGGCAGGAAGAGGCCGA
GCGCACCACCAAAGAACAGGAGCGACAGCGACGACGTTGA back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig1081:19417..23956+ >mRNA_L-elsbetiae_contig1081.758.1 ID=mRNA_L-elsbetiae_contig1081.758.1|Name=mRNA_L-elsbetiae_contig1081.758.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1374bp|location=Sequence derived from alignment at L-elsbetiae_contig1081:19417..23956+ (Laminarionema elsbetiae ELsaHSoW15) ATGACCTTCGCGGTAGCCCCTTGCTTTGGCAGTGAAATGGTCGCGTACGT TCCTACTTTTGCCCTGGCGCCAGCAGAACTGGCCCGCCGATCGCCGAGGC GGAGCGGCTGGAGCGGGAGGTGGAGTGCCCTGTGTGCGGTGCAACCCCAA ATGACCTTCGCGGTAGCCCCTTGCTTTGGCAGTGAAATGGTCGCGTACGT TCCTACTTTTGCCCTGGCGCCAGCAGAACTGGCCCGCCGATCGCCGAGGC GGAGCGGCTGGAGCGGGAGGTGGAGTGCCCTGTGTGCGGTGCAACCCCAA GAAGGCAAACGAAGCGACGTCGAGGACATCCCAGACCTGTACAGGGAAGG CAAACGAAGCGACGTCGAGGACATCCCAGACCTGTACAGGGTTACTCCTG CCCCTACCTACGAGGAGATGTTGGCGTGGGCAGAGCAAACGGACAAGAGA GTCGCCACCGGGCGGTTGCCGCCGTTAGGCTCGCGCCCGCCGCCGTCCGC AGCAGAGGCAGTGGAAGTGGCGGATGGCAGCCTTCTCAGCGATCAAGAGC AGGCCCAGGTTACTCCTGCCCCTACCTACGAGGAGATGTTGGCGTGGGCA GAGCAAACGGACAAGAGAGTCGCCACCGGGCGGTTGCCGCCGTTAGGCTC GCGCCCGCCGCCGTCCGCAGCAGAGGCAGTGGAAGTGGCGGATGGCAGCC TTCTCAGCGATCAAGAGCAGGCCCAGATGGAAACTTTGTCTGGGCTTCTG AGCAAGCGGCGGCGGGAGGGCTCCCTCCTGACCGAGCAAGAAGAGGCTTC CCTTAGATGGAAACTTTGTCTGGGCTTCTGAGCAAGCGGCGGCGGGAGGG CTCCCTCCTGACCGAGCAAGAAGAGGCTTCCCTTAGAGCCGCTGTCGTTG GCCTTTCAGCATCAGTGGACAATGTAGGCGACGAGATATTTGACGGCACT GCTTCCTCCCCAGATTCCGGTGATGGTAGAGCGGAGACGGACGACTTGGT CCGCAATCAAATTTACGGATCGCGAGAGAGCCGCTGTCGTTGGCCTTTCA GCATCAGTGGACAATGTAGGCGACGAGATATTTGACGGCACTGCTTCCTC CCCAGATTCCGGTGATGGTAGAGCGGAGACGGACGACTTGGTCCGCAATC AAATTTACGGATCGCGAGAGGTGCGCGACAAGGTGTACCTTTACGCCTGG TCCTTGATGAAGAACAGGCAGGAAGAGGCCGAGCGCACCACCAAAGAACA GGAGCGACAGCGACGACGTTGAGTGCGCGACAAGGTGTACCTTTACGCCT GGTCCTTGATGAAGAACAGGCAGGAAGAGGCCGAGCGCACCACCAAAGAA CAGGAGCGACAGCGACGACGTTGA back to top
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