mRNA_L-elsbetiae_contig10808.756.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10808.756.1
Unique NamemRNA_L-elsbetiae_contig10808.756.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10808.756.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10808contigL-elsbetiae_contig10808:3856..4355 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size500
Cds size327
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815300.5522034-UTR-L-elsbetiae_contig10808:3855..40281622815300.5522034-UTR-L-elsbetiae_contig10808:3855..4028Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10808 3856..4028 +
1691682825.364918-UTR-L-elsbetiae_contig10808:3855..40281691682825.364918-UTR-L-elsbetiae_contig10808:3855..4028Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10808 3856..4028 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815300.5682988-CDS-L-elsbetiae_contig10808:4028..43551622815300.5682988-CDS-L-elsbetiae_contig10808:4028..4355Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10808 4029..4355 +
1691682825.3740208-CDS-L-elsbetiae_contig10808:4028..43551691682825.3740208-CDS-L-elsbetiae_contig10808:4028..4355Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10808 4029..4355 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10808.756.1prot_L-elsbetiae_contig10808.756.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10808 4029..4355 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10808.756.1

>prot_L-elsbetiae_contig10808.756.1 ID=prot_L-elsbetiae_contig10808.756.1|Name=mRNA_L-elsbetiae_contig10808.756.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=109bp
MPLGRLLCARAGGISPRAAATPPRAHWTRTRGVGVGGGGRPGPTTRCLGL
LPAMRHRRQRRCRRRHRRNIALLAPRRLRLRLLLLPPPSFRRRHPPRWPS
RLLRRTTRA
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mRNA from alignment at L-elsbetiae_contig10808:3856..4355+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10808.756.1 ID=mRNA_L-elsbetiae_contig10808.756.1|Name=mRNA_L-elsbetiae_contig10808.756.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=500bp|location=Sequence derived from alignment at L-elsbetiae_contig10808:3856..4355+ (Laminarionema elsbetiae ELsaHSoW15)
GCGGTACCGTAGTCCGCGTCCAGCCTGGAGGGGCCACCGCTGCCACCGCT
GCCGCCACCGCCGTTCACCGGGGAGTGCCTGTAAAATTGCGGCATCGGCT
CCATCTTTGCCAAGCCTAGCGCTGCCGCCGTCCCCGCCATATTGTTCGAG
AAGACGGCGTGGGTGCTGCTCTTATGCCTCTTGGGCGGCTCCTGTGCGCC
CGTGCCGGCGGCATCTCTCCACGCGCCGCCGCCACCCCTCCCCGCGCCCA
TTGGACCAGGACCAGGGGAGTTGGAGTTGGGGGCGGAGGTAGACCTGGGC
CTACTACCCGTTGCCTTGGGCTTCTTCCCGCCATGCGCCACAGACGCCAA
CGCCGCTGCCGCCGCCGCCACCGTCGCAACATCGCGCTTCTTGCCCCGCG
GCGGCTGCGGCTGCGGCTGCTGCTGTTGCCACCGCCGAGCTTCCGACGAC
GACACCCCCCCCGCTGGCCGTCCCGTCTGCTGCGGCGTACTACCCGTGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10808:3856..4355+

>mRNA_L-elsbetiae_contig10808.756.1 ID=mRNA_L-elsbetiae_contig10808.756.1|Name=mRNA_L-elsbetiae_contig10808.756.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=654bp|location=Sequence derived from alignment at L-elsbetiae_contig10808:3856..4355+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCTCTTGGGCGGCTCCTGTGCGCCCGTGCCGGCGGCATCTCTCCACG
CGCCGCCGCCACCCCTCCCCGCGCCCATTGGACCAGGACCAGGGGAGTTG
GAGTTGGGGGCGGAGGTAGACCTGGGCCTACTACCCGTTGCCTTGGGCTT
CTTCCCGCCATGCGCCACAGACGCCAACGCCGCTGCCGCCGCCGCCACCG
TCGCAACATCGCGCTTCTTGCCCCGCGGCGGCTGCGGCTGCGGCTGCTGC
TGTTGCCACCGCCGAGCTTCCGACGACGACACCCCCCCCGCTGGCCGTCC
CGTCTGCTGCGGCGTACTACCCGTGCCATGCCTCTTGGGCGGCTCCTGTG
CGCCCGTGCCGGCGGCATCTCTCCACGCGCCGCCGCCACCCCTCCCCGCG
CCCATTGGACCAGGACCAGGGGAGTTGGAGTTGGGGGCGGAGGTAGACCT
GGGCCTACTACCCGTTGCCTTGGGCTTCTTCCCGCCATGCGCCACAGACG
CCAACGCCGCTGCCGCCGCCGCCACCGTCGCAACATCGCGCTTCTTGCCC
CGCGGCGGCTGCGGCTGCGGCTGCTGCTGTTGCCACCGCCGAGCTTCCGA
CGACGACACCCCCCCCGCTGGCCGTCCCGTCTGCTGCGGCGTACTACCCG
TGCC
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