mRNA_L-elsbetiae_contig10796.741.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10796.741.1
Unique NamemRNA_L-elsbetiae_contig10796.741.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig10796.741.1 vs. uniprot
Match: A0A6H5LAN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAN5_9PHAE)

HSP 1 Score: 247 bits (630), Expect = 6.380e-73
Identity = 126/150 (84.00%), Postives = 134/150 (89.33%), Query Frame = 1 
Query:   31 RSSVGLRMNPATVENAEEAWLPAAEAELTALAAEAEKVDRMPDALLLRPPPPGGVDLITPDPRYKPFLAELPADEASPEWCLRPQDIPREVPATKGLLLGYAPGTTTFRAYAGAPQLTHHWKPKRERRSSGLACMRGQASRGVWQPARAP 480
            R ++G RM P T +NAEEAWL AAEAELTALAAEAEKVDRMPD+LLLRPPPP GVDLITPDPRYK FL ELP DEASPEWCLRPQ+IP EVP TKGLLLGY+PGTTT RAYAGAP+ +  WKPKRERRSSGLACMRGQASRGVWQPARAP
Sbjct:  949 RQTLG-RMIPDTADNAEEAWLRAAEAELTALAAEAEKVDRMPDSLLLRPPPPDGVDLITPDPRYKGFLPELPIDEASPEWCLRPQEIPLEVPVTKGLLLGYSPGTTTLRAYAGAPRFSSFWKPKRERRSSGLACMRGQASRGVWQPARAP 1097
[Close]
BLAST of mRNA_L-elsbetiae_contig10796.741.1 vs. uniprot
Match: D7FVH9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVH9_ECTSI)

HSP 1 Score: 158 bits (400), Expect = 7.190e-42
Identity = 74/88 (84.09%), Postives = 79/88 (89.77%), Query Frame = 1 
Query:  217 RYKPFLAELPADEASPEWCLRPQDIPREVPATKGLLLGYAPGTTTFRAYAGAPQLTHHWKPKRERRSSGLACMRGQASRGVWQPARAP 480
            RYK FL ELP DEASPEWCLRPQ+IPREVP TKGLLLGY+PGTTT RAYA AP+L+  WKPKRERRSSGLACM GQASRGVW+PARAP
Sbjct: 1012 RYKGFLPELPIDEASPEWCLRPQEIPREVPVTKGLLLGYSPGTTTLRAYANAPRLSSFWKPKRERRSSGLACMSGQASRGVWRPARAP 1099
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10796.741.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LAN5_9PHAE6.380e-7384.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVH9_ECTSI7.190e-4284.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10796contigL-elsbetiae_contig10796:1344..3610 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score157.9
Seed ortholog evalue3.9e-36
Seed eggNOG ortholog2880.D7FVH9
Preferred nameCFAP221
Hectar predicted targeting categoryother localisation
GOsGO:0003341,GO:0003674,GO:0005488,GO:0005515,GO:0005516,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0032838,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044458,GO:0044463,GO:0044464,GO:0044782,GO:0060271,GO:0070925,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038
EggNOG free text desc.cilium movement
EggNOG OGs28KJC@1,2QT0T@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-05_005920.1
Exons4
Model size489
Cds size486
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10796.741.1prot_L-elsbetiae_contig10796.741.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10796 1344..3609 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815298.576928-CDS-L-elsbetiae_contig10796:1343..13931622815298.576928-CDS-L-elsbetiae_contig10796:1343..1393Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10796 1344..1393 +
1691682824.1472516-CDS-L-elsbetiae_contig10796:1343..13931691682824.1472516-CDS-L-elsbetiae_contig10796:1343..1393Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10796 1344..1393 +
1622815298.5867648-CDS-L-elsbetiae_contig10796:1968..21361622815298.5867648-CDS-L-elsbetiae_contig10796:1968..2136Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10796 1969..2136 +
1691682824.170116-CDS-L-elsbetiae_contig10796:1968..21361691682824.170116-CDS-L-elsbetiae_contig10796:1968..2136Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10796 1969..2136 +
1622815298.5957541-CDS-L-elsbetiae_contig10796:3013..30951622815298.5957541-CDS-L-elsbetiae_contig10796:3013..3095Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10796 3014..3095 +
1691682824.180167-CDS-L-elsbetiae_contig10796:3013..30951691682824.180167-CDS-L-elsbetiae_contig10796:3013..3095Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10796 3014..3095 +
1622815298.6048386-CDS-L-elsbetiae_contig10796:3423..36091622815298.6048386-CDS-L-elsbetiae_contig10796:3423..3609Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10796 3424..3609 +
1691682824.187972-CDS-L-elsbetiae_contig10796:3423..36091691682824.187972-CDS-L-elsbetiae_contig10796:3423..3609Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10796 3424..3609 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10796.741.1

>prot_L-elsbetiae_contig10796.741.1 ID=prot_L-elsbetiae_contig10796.741.1|Name=mRNA_L-elsbetiae_contig10796.741.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=162bp
RASKASLGRRRSSVGLRMNPATVENAEEAWLPAAEAELTALAAEAEKVDR
MPDALLLRPPPPGGVDLITPDPRYKPFLAELPADEASPEWCLRPQDIPRE
VPATKGLLLGYAPGTTTFRAYAGAPQLTHHWKPKRERRSSGLACMRGQAS
RGVWQPARAPTA
back to top

mRNA from alignment at L-elsbetiae_contig10796:1344..3610+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10796.741.1 ID=mRNA_L-elsbetiae_contig10796.741.1|Name=mRNA_L-elsbetiae_contig10796.741.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2267bp|location=Sequence derived from alignment at L-elsbetiae_contig10796:1344..3610+ (Laminarionema elsbetiae ELsaHSoW15)
CGGGCAAGCAAGGCCTCGCTCGGGAGGCGCCGGAGCTCGGTGGGGCTCAG
GTGACCGAAGGGCGCCTTTGTGCTGCATCAACTCCAAGCCGCTCCCTCGA
CGACCGTCACCTCACGCTTTGATTTCTTGTGGGTGGAGCGTCCTTCCGTT
CACGTTTCACGGGGTAGAACAGCGGTAACGGTAGCCTGTGGTCAAGGATC
AGGCCCGGCCAATTCCGAATACCACGGGGTGGCGGTCTCGTCACAAAATC
GTAATAAACAGTGCAGTATTTATTAACAAACGCACTTCAAAGGCTACACA
CTCAACAAAGAGCTGCTTCTCGAAACACTCCTGCTGCACATACATAGGGC
CACAAAAACAGCGACAACCCTAAAACCCTCAGAACCAGCCTTTGAGTCTT
TGCTATCTAGATAGATAGTGAAACTGGGACCCCCCCACCGCTGCCATTTG
TTGGTCATTTTGTTTTTTCGCCCATCATTTGCGTATTCGTCGTCTGCCCC
ACTGGCCCCCTTTCTCCACTACGACTAGCTAGACGACCCAACCGGGGTCA
CACAGGAGGGGGGTTGGGCCTCCTCCTTATCTCGCCGTAATCTTCTCGCG
CCGTCCGCCCCCTCCCCCCCCCAAGGATGAACCCCGCCACCGTCGAAAAC
GCCGAGGAGGCCTGGCTGCCGGCGGCCGAGGCGGAGCTGACGGCGCTAGC
GGCCGAGGCCGAGAAGGTGGATAGGATGCCCGATGCTCTGCTGCTTCGTC
CTCCTCCGCCCGGCGGCGTGGACTTGATTACGCCCGACCCCAGGTACATC
TGCCCAAGACTATTCGGGCGGGCTTGCTGCAGCGTTTCGAGTTTCGCATA
AATATGCACGTACCGTAGGTCCGCTCTAAGTTCCCTCCGAATTTCTGAGC
CCCCCCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGACCACCACACCT
TTTTTTCTCCCAGCCAGTTTTTTTTTTTTTTTTTTTTTAGATATTACCTT
CCCCCTCCCCNNNNNNNNNNATAAATGTGCACGTCCCCTTGGTCCGCTCT
AATTTTCCTCCGAATTTCTGGGCCCCCCCGCCCCCCCCCCACGTTCACCT
TTTCGGCAAAAGCATGATATCTTTGACTCCTCCGGGATTGTTTTTTTTTT
CACGAAACAAGATCCCCTCCCTCCCCGGGGGCACAACATAGAGCGTGTTA
CGGTATGTAGGAGTGGGTGCCTGTTTGCGAGCCTTCAATATCGGCGCGAA
ATAGCGCGCATGTGTATTTGTATTAAGTCGCTGTTCACGCAACGGCATGC
CGAGATTTAGTATGCAGGGTCTTCCAAGAGTATATGGTCCGATGCACAAG
GTGACGACCTTCTTGTCTTGTTGAGCCTGGTTTTAGACCAACGGGTGAGC
TGTCCCCGTATATGTGCCCAGGATAGAAGCCTGACATAGAAATAACAAAT
CGTACTCACCTCTGCATTTGCTGCCCCACAAAATGTGCGGACACTCGTCC
GGGTTTCGTAAGTACCGAGGTGTGTGCCATGTTCTAAACGAAAAAAACGA
AACTAAAAGACTCCTTCGACTGCCGGTATCCCCCCGGACGTGTTCACAAC
ACCGTGTTCTCACAGCTGCCTCCCTCTGCTCGCGGCCAATGCACGCTGGT
TTTTCGCCTGAACGGTGCAGATATAAGCCGTTCCTGGCGGAGCTTCCAGC
AGACGAAGCGAGCCCAGAGTGGTGCTTGCGTCCCCAAGATATCCCCAGGG
AGGTAAGAACGCTCCCCATGCGAAGAATGTATTTTTTATGTATCATATGT
ATCCACTACGGTTCGCAGTGAAGGAGTAACAAGCGCAGCACAGAGCCGGC
CAATCTCTATGAGGTGTCTGCTCCTCCTCGATATGCATACAACACGCATG
GAATCCAGAGTAACGATCTGAAAAAACACAAAACCATTCGTGGGTTTTGC
CCCCCCCCCCCCCACAAGCCGTCGACGAGACGGAAGCAGGTCGCAACACA
CGGGCGCGGCTCGCAAGCTCTCAGATCTTCGGAGACGCAAACAATCTTCC
ATTGCTCCGTCCCCCCGGCCCCTCCGCCAGGTCCCCGCGACCAAGGGGCT
CCTCCTCGGGTACGCCCCGGGCACAACCACGTTCCGCGCCTACGCTGGAG
CCCCCCAACTCACTCACCACTGGAAGCCCAAGCGCGAGCGCCGGTCTTCC
GGTCTCGCGTGCATGAGGGGGCAGGCGTCCCGAGGCGTGTGGCAACCAGC
CCGAGCGCCGACAGCGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig10796:1344..3610+

>mRNA_L-elsbetiae_contig10796.741.1 ID=mRNA_L-elsbetiae_contig10796.741.1|Name=mRNA_L-elsbetiae_contig10796.741.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=972bp|location=Sequence derived from alignment at L-elsbetiae_contig10796:1344..3610+ (Laminarionema elsbetiae ELsaHSoW15)
CGGGCAAGCAAGGCCTCGCTCGGGAGGCGCCGGAGCTCGGTGGGGCTCAG
CGGGCAAGCAAGGCCTCGCTCGGGAGGCGCCGGAGCTCGGTGGGGCTCAG
GATGAACCCCGCCACCGTCGAAAACGCCGAGGAGGCCTGGCTGCCGGCGG
CCGAGGCGGAGCTGACGGCGCTAGCGGCCGAGGCCGAGAAGGTGGATAGG
ATGCCCGATGCTCTGCTGCTTCGTCCTCCTCCGCCCGGCGGCGTGGACTT
GATTACGCCCGACCCCAGGATGAACCCCGCCACCGTCGAAAACGCCGAGG
AGGCCTGGCTGCCGGCGGCCGAGGCGGAGCTGACGGCGCTAGCGGCCGAG
GCCGAGAAGGTGGATAGGATGCCCGATGCTCTGCTGCTTCGTCCTCCTCC
GCCCGGCGGCGTGGACTTGATTACGCCCGACCCCAGATATAAGCCGTTCC
TGGCGGAGCTTCCAGCAGACGAAGCGAGCCCAGAGTGGTGCTTGCGTCCC
CAAGATATCCCCAGGGAGATATAAGCCGTTCCTGGCGGAGCTTCCAGCAG
ACGAAGCGAGCCCAGAGTGGTGCTTGCGTCCCCAAGATATCCCCAGGGAG
GTCCCCGCGACCAAGGGGCTCCTCCTCGGGTACGCCCCGGGCACAACCAC
GTTCCGCGCCTACGCTGGAGCCCCCCAACTCACTCACCACTGGAAGCCCA
AGCGCGAGCGCCGGTCTTCCGGTCTCGCGTGCATGAGGGGGCAGGCGTCC
CGAGGCGTGTGGCAACCAGCCCGAGCGCCGACAGCGGTCCCCGCGACCAA
GGGGCTCCTCCTCGGGTACGCCCCGGGCACAACCACGTTCCGCGCCTACG
CTGGAGCCCCCCAACTCACTCACCACTGGAAGCCCAAGCGCGAGCGCCGG
TCTTCCGGTCTCGCGTGCATGAGGGGGCAGGCGTCCCGAGGCGTGTGGCA
ACCAGCCCGAGCGCCGACAGCG
back to top