mRNA_L-elsbetiae_contig10794.739.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10794.739.1
Unique NamemRNA_L-elsbetiae_contig10794.739.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10794.739.1 vs. uniprot
Match: D8LT03_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT03_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 3.980e-7
Identity = 22/36 (61.11%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:  286 MDEAFQSRFVPFWQEAFFLSQLGAELDASLARLVFG 393
            MDEAF++RF PFWQE FF S++G EL+A+  +L+FG
Sbjct:    1 MDEAFENRFTPFWQEMFFFSEIGVELNAAAVKLIFG 36
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10794.739.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LT03_ECTSI3.980e-761.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10794contigL-elsbetiae_contig10794:1987..3507 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-08_004330.1
Exons2
Model size691
Cds size399
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10794.739.1prot_L-elsbetiae_contig10794.739.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10794 1987..3216 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815298.363594-CDS-L-elsbetiae_contig10794:1986..22471622815298.363594-CDS-L-elsbetiae_contig10794:1986..2247Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10794 1987..2247 +
1691682823.9742172-CDS-L-elsbetiae_contig10794:1986..22471691682823.9742172-CDS-L-elsbetiae_contig10794:1986..2247Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10794 1987..2247 +
1622815298.3767328-CDS-L-elsbetiae_contig10794:3078..32161622815298.3767328-CDS-L-elsbetiae_contig10794:3078..3216Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10794 3079..3216 +
1691682823.9902864-CDS-L-elsbetiae_contig10794:3078..32161691682823.9902864-CDS-L-elsbetiae_contig10794:3078..3216Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10794 3079..3216 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815298.3862512-UTR-L-elsbetiae_contig10794:3216..35071622815298.3862512-UTR-L-elsbetiae_contig10794:3216..3507Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10794 3217..3507 +
1691682824.0019095-UTR-L-elsbetiae_contig10794:3216..35071691682824.0019095-UTR-L-elsbetiae_contig10794:3216..3507Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10794 3217..3507 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10794.739.1

>prot_L-elsbetiae_contig10794.739.1 ID=prot_L-elsbetiae_contig10794.739.1|Name=mRNA_L-elsbetiae_contig10794.739.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=133bp
SLLSPALPPSCCGSDSQVKGTPLLCERGGYQRDLFSLQRPQRGARFTPKQ
ASNLATPSLNMGLMSGAAKVCLCSTFCLSGVCKLTPKWGADVHAAMDEAF
QSRFVPFWQEAFFLSQLGAELDASLARLVFGR*
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mRNA from alignment at L-elsbetiae_contig10794:1987..3507+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10794.739.1 ID=mRNA_L-elsbetiae_contig10794.739.1|Name=mRNA_L-elsbetiae_contig10794.739.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1521bp|location=Sequence derived from alignment at L-elsbetiae_contig10794:1987..3507+ (Laminarionema elsbetiae ELsaHSoW15)
TCCCTCCTATCTCCCGCTCTCCCGCCTTCTTGCTGTGGTAGTGATTCTCA
GGTCAAGGGTACTCCTCTGCTTTGTGAACGCGGGGGCTACCAGCGGGACT
TATTCAGCCTCCAACGTCCGCAGCGCGGTGCGCGGTTTACACCAAAGCAA
GCCTCGAACCTCGCGACCCCTTCCCTCAACATGGGGCTGATGTCGGGCGC
GGCGAAGGTCTGCCTCTGCAGCACCTTTTGTCTGTCAGGAGTCTGCAAGC
TAACGCCAAAGGTACGCTCAAATATTCCGGCGGCGCAGACTCTCCGGCGT
AGAACATTCGTCGGCCACCTACACAGTCGGTGCACCATGAAGTTGCTCCT
GTAAATAACGACACCTCGGCGTGTTTCGTCCAAGTTTGGTGCTACTATTG
CTGTCCTGAGGCCAATTTCACAGAGTTAGTTCCCGAAATAATAAACGAAA
TTAATCAAGGGGGTTAGCTCCCGTAATAAATCGCTCTGCTGTCTGTTGGG
AGTGTCATAGCTGTGCGCTGTGATACACGGAGCACGCGTGTGTATTGTAC
GGAGCACGCGTGGCCAATATAAGCGCCCGTCGTGTGGTGCAACCGTTATG
CACGTATGTTGTAGCGTTTCACCTCTTAATCTGCGCAACACCTTGTTGAT
CGCACTACTGTTTGTGCACCACACTGCTGTGTAGGTATTCCAATGTGGCA
GGTCAACACTAGGTAAGTCTAGACTGCATCTATCTATGTAGTTATCGCGC
TCTCGTCTCAGCACCCCACACGCAACGCCTCGGTTCCACGTGGGCAGACT
TTCCAGGTAGATGAACAATTTACTACAGACTTTCCAGGTAGATAGACAGG
TATGTTTTTAGCACTCTGACATGTTCTCGAAGAAACGGACGTTCCTGCCG
AACTTCCTCACCATCAAACAATAGCTATTGTAGTATCATCTTTGAATCTC
TCAACCGGCACCTCCACCCTCTCCTGATCCCTTTGTGAATCACCCCCCCT
CCCTCTGATCGGATTTGGATGGGGCTGGTGTCTGCCTGCTCTGCTTGACA
ATGCCCACTGCGCCCGATGGTTTGCTGGTTTATTATTGGCAGTGGGGGGC
CGACGTCCACGCAGCCATGGACGAGGCCTTCCAGAGCAGATTTGTCCCCT
TTTGGCAAGAGGCGTTCTTCCTCTCGCAGCTTGGAGCGGAGCTCGACGCG
TCGTTGGCGAGGCTCGTTTTCGGAAGGTGAGAGAAAGAGGACAACGGGTC
TTCGTTTCGTTTTTAAGATTATCGTATGTATGTAAATAGATACATATGTT
TGGCGGCGATCCTCCTCTTTGCGCGCTAAATAAAGCCTCCTTCATTTTGA
TATTACTTACAATATTTAGAGCCAAAACGCAAAATACCTACATACAAAAG
CCACCAAAATCGCCGACGAGGCGATCCCCATTTGTGCGTGCTTTCCAGGG
TTTCTCATGCATACGGCATGCATGCTCCGCCTGTGACGAGTCCTGCGCCG
CACCTCGTGTCGACCCCTCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10794:1987..3507+

>mRNA_L-elsbetiae_contig10794.739.1 ID=mRNA_L-elsbetiae_contig10794.739.1|Name=mRNA_L-elsbetiae_contig10794.739.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=798bp|location=Sequence derived from alignment at L-elsbetiae_contig10794:1987..3507+ (Laminarionema elsbetiae ELsaHSoW15)
TCCCTCCTATCTCCCGCTCTCCCGCCTTCTTGCTGTGGTAGTGATTCTCA
GGTCAAGGGTACTCCTCTGCTTTGTGAACGCGGGGGCTACCAGCGGGACT
TATTCAGCCTCCAACGTCCGCAGCGCGGTGCGCGGTTTACACCAAAGCAA
GCCTCGAACCTCGCGACCCCTTCCCTCAACATGGGGCTGATGTCGGGCGC
GGCGAAGGTCTGCCTCTGCAGCACCTTTTGTCTGTCAGGAGTCTGCAAGC
TAACGCCAAAGTCCCTCCTATCTCCCGCTCTCCCGCCTTCTTGCTGTGGT
AGTGATTCTCAGGTCAAGGGTACTCCTCTGCTTTGTGAACGCGGGGGCTA
CCAGCGGGACTTATTCAGCCTCCAACGTCCGCAGCGCGGTGCGCGGTTTA
CACCAAAGCAAGCCTCGAACCTCGCGACCCCTTCCCTCAACATGGGGCTG
ATGTCGGGCGCGGCGAAGGTCTGCCTCTGCAGCACCTTTTGTCTGTCAGG
AGTCTGCAAGCTAACGCCAAAGTGGGGGGCCGACGTCCACGCAGCCATGG
ACGAGGCCTTCCAGAGCAGATTTGTCCCCTTTTGGCAAGAGGCGTTCTTC
CTCTCGCAGCTTGGAGCGGAGCTCGACGCGTCGTTGGCGAGGCTCGTTTT
CGGAAGGTGATGGGGGGCCGACGTCCACGCAGCCATGGACGAGGCCTTCC
AGAGCAGATTTGTCCCCTTTTGGCAAGAGGCGTTCTTCCTCTCGCAGCTT
GGAGCGGAGCTCGACGCGTCGTTGGCGAGGCTCGTTTTCGGAAGGTGA
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